Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:03:53 (12166): wrapper (7.7.26015): starting
06:03:53 (12166): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 06:03:53] Arguments: --nthreads 8
[2025-11-24 06:03:53] Threads: 8
[2025-11-24 06:03:53] Checking for CVMFS
[2025-11-24 06:03:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 06:03:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 06:03:55] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 06:03:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 06:03:56] 2.11.2.0 20118 281896 143980 153233 1 236 13404629 25165824 4585 130560 2 125128380 99.871 73914600 2713 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 06:03:56] CVMFS is ok
[2025-11-24 06:03:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 06:03:56] Checking for apptainer binary...
[2025-11-24 06:03:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 06:03:56] Running /usr/bin/apptainer --version
[2025-11-24 06:03:56] apptainer version 1.3.2-1.el7
[2025-11-24 06:03:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 06:04:10] cg-vwn344.simple-grid.lan
[2025-11-24 06:04:10] apptainer works
[2025-11-24 06:04:10] Set ATHENA_PROC_NUMBER=8
[2025-11-24 06:04:10] Set ATHENA_CORE_NUMBER=8
[2025-11-24 06:04:10] Starting ATLAS job with PandaID=6893876486
[2025-11-24 06:04:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 05:01:39]  *** The last 200 lines of the pilot log: ***
[2025-11-25 05:01:39] 2025-11-25 04:00:24,980 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 05:01:39] 2025-11-25 04:00:25,812 | INFO     | time since job start (82339s) is within the limit (172800.0s)
[2025-11-25 05:01:39] 2025-11-25 04:00:27,487 | INFO     | monitor loop #5528: job 0:6893876486 is in state 'finished'
[2025-11-25 05:01:39] 2025-11-25 04:00:27,487 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 05:01:39] 2025-11-25 04:00:27,826 | INFO     | time since job start (82341s) is within the limit (172800.0s)
[2025-11-25 05:01:39] 2025-11-25 04:00:29,834 | INFO     | time since job start (82343s) is within the limit (172800.0s)
[2025-11-25 05:01:39] 2025-11-25 04:00:29,992 | INFO     | monitor loop #5529: job 0:6893876486 is in state 'finished'
[2025-11-25 05:01:39] 2025-11-25 04:00:29,992 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 05:01:39] 2025-11-25 04:00:30,978 | INFO     | PID=15959 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 05:01:39] 2025-11-25 04:00:30,978 | INFO     | .. there are 2 such processes running
[2025-11-25 05:01:39] 2025-11-25 04:00:31,979 | INFO     | time since job start (82345s) is within the limit (172800.0s)
[2025-11-25 05:01:39] 2025-11-25 04:00:32,498 | INFO     | monitor loop #5530: job 0:6893876486 is in state 'finished'
[2025-11-25 05:01:39] 2025-11-25 04:00:32,498 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 05:01:39] 2025-11-25 04:00:33,401 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 05:01:39] 2025-11-25 04:00:33,402 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 05:01:39] 2025-11-25 04:00:33,404 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6893876486/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 05:01:39] 2025-11-25 04:00:33,405 | INFO     | extracted standard info from prmon json
[2025-11-25 05:01:39] 2025-11-25 04:00:33,405 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 05:01:39] 2025-11-25 04:00:33,405 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 05:01:39] 2025-11-25 04:00:33,467 | INFO     | fitting pss+swap vs Time
[2025-11-25 05:01:39] 2025-11-25 04:00:33,469 | INFO     | sum of square deviations: 746090708104.9536
[2025-11-25 05:01:39] 2025-11-25 04:00:33,576 | INFO     | sum of deviations: 2573467997666.7812
[2025-11-25 05:01:39] 2025-11-25 04:00:33,577 | INFO     | mean x: 1764002243.4940298
[2025-11-25 05:01:39] 2025-11-25 04:00:33,577 | INFO     | mean y: 2827856.0985074625
[2025-11-25 05:01:39] 2025-11-25 04:00:33,577 | INFO     | intersect: -6081691455.199092
[2025-11-25 05:01:39] 2025-11-25 04:00:33,579 | INFO     | chi2: 30.334254614984186
[2025-11-25 05:01:39] 2025-11-25 04:00:33,581 | INFO     | sum of square deviations: 737770456024.9933
[2025-11-25 05:01:39] 2025-11-25 04:00:33,649 | INFO     | sum of deviations: 3025128371047.9556
[2025-11-25 05:01:39] 2025-11-25 04:00:33,650 | INFO     | mean x: 1764002090.997753
[2025-11-25 05:01:39] 2025-11-25 04:00:33,650 | INFO     | mean y: 2836133.31835206
[2025-11-25 05:01:39] 2025-11-25 04:00:33,650 | INFO     | intersect: -7230216814.907107
[2025-11-25 05:01:39] 2025-11-25 04:00:33,652 | INFO     | chi2: 26.948633642267275
[2025-11-25 05:01:39] 2025-11-25 04:00:33,652 | INFO     | current chi2=26.948633642267275 (change=11.161048839632667 %)
[2025-11-25 05:01:39] 2025-11-25 04:00:33,652 | INFO     | right removable region: 1334
[2025-11-25 05:01:39] 2025-11-25 04:00:33,654 | INFO     | sum of square deviations: 737769643504.993
[2025-11-25 05:01:39] 2025-11-25 04:00:33,727 | INFO     | sum of deviations: 2003706287714.1042
[2025-11-25 05:01:39] 2025-11-25 04:00:33,728 | INFO     | mean x: 1764002395.997753
[2025-11-25 05:01:39] 2025-11-25 04:00:33,728 | INFO     | mean y: 2838298.0374531834
[2025-11-25 05:01:39] 2025-11-25 04:00:33,728 | INFO     | intersect: -4788010340.856865
[2025-11-25 05:01:39] 2025-11-25 04:00:33,730 | INFO     | chi2: 25.398254017115104
[2025-11-25 05:01:39] 2025-11-25 04:00:33,730 | INFO     | current chi2=25.398254017115104 (change=16.272035230530605 %)
[2025-11-25 05:01:39] 2025-11-25 04:00:33,730 | INFO     | left removable region: 10
[2025-11-25 05:01:39] 2025-11-25 04:00:33,732 | INFO     | sum of square deviations: 719682520500.9519
[2025-11-25 05:01:39] 2025-11-25 04:00:33,790 | INFO     | sum of deviations: 2047332399969.5854
[2025-11-25 05:01:39] 2025-11-25 04:00:33,790 | INFO     | mean x: 1764002365.5060422
[2025-11-25 05:01:39] 2025-11-25 04:00:33,791 | INFO     | mean y: 2857902.3648036253
[2025-11-25 05:01:39] 2025-11-25 04:00:33,791 | INFO     | intersect: -5015325940.713173
[2025-11-25 05:01:39] 2025-11-25 04:00:33,793 | INFO     | chi2: 17.374441820926428
[2025-11-25 05:01:39] 2025-11-25 04:00:33,793 | INFO     | current memory leak: 2.84 B/s (using 1324 data points, chi2=17.37)
[2025-11-25 05:01:39] 2025-11-25 04:00:33,794 | INFO     | could have reported an average CPU frequency of 1999 MHz (45 samples)
[2025-11-25 05:01:39] 2025-11-25 04:00:33,795 | INFO     | ..............................
[2025-11-25 05:01:39] 2025-11-25 04:00:33,795 | INFO     | . Timing measurements:
[2025-11-25 05:01:39] 2025-11-25 04:00:33,795 | INFO     | . get job = 0 s
[2025-11-25 05:01:39] 2025-11-25 04:00:33,795 | INFO     | . initial setup = 8 s
[2025-11-25 05:01:39] 2025-11-25 04:00:33,795 | INFO     | . payload setup = 160 s
[2025-11-25 05:01:39] 2025-11-25 04:00:33,795 | INFO     | . stage-in = 0 s
[2025-11-25 05:01:39] 2025-11-25 04:00:33,795 | INFO     | . payload execution = 81869 s
[2025-11-25 05:01:39] 2025-11-25 04:00:33,795 | INFO     | . stage-out = 7 s
[2025-11-25 05:01:39] 2025-11-25 04:00:33,796 | INFO     | . log creation = 2 s
[2025-11-25 05:01:39] 2025-11-25 04:00:33,796 | INFO     | ..............................
[2025-11-25 05:01:39] 2025-11-25 04:00:33,985 | INFO     | time since job start (82347s) is within the limit (172800.0s)
[2025-11-25 05:01:39] 2025-11-25 04:00:33,999 | INFO     | 
[2025-11-25 05:01:39] 2025-11-25 04:00:33,999 | INFO     | job summary report
[2025-11-25 05:01:39] 2025-11-25 04:00:33,999 | INFO     | --------------------------------------------------
[2025-11-25 05:01:39] 2025-11-25 04:00:33,999 | INFO     | PanDA job id: 6893876486
[2025-11-25 05:01:39] 2025-11-25 04:00:33,999 | INFO     | task id: 47523449
[2025-11-25 05:01:39] 2025-11-25 04:00:33,999 | INFO     | errors: (none)
[2025-11-25 05:01:39] 2025-11-25 04:00:34,000 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 05:01:39] 2025-11-25 04:00:34,000 | INFO     | pilot state: finished 
[2025-11-25 05:01:39] 2025-11-25 04:00:34,000 | INFO     | transexitcode: 0
[2025-11-25 05:01:39] 2025-11-25 04:00:34,000 | INFO     | exeerrorcode: 0
[2025-11-25 05:01:39] 2025-11-25 04:00:34,000 | INFO     | exeerrordiag: 
[2025-11-25 05:01:39] 2025-11-25 04:00:34,000 | INFO     | exitcode: 0
[2025-11-25 05:01:39] 2025-11-25 04:00:34,000 | INFO     | exitmsg: OK
[2025-11-25 05:01:39] 2025-11-25 04:00:34,001 | INFO     | cpuconsumptiontime: 344971 s
[2025-11-25 05:01:39] 2025-11-25 04:00:34,001 | INFO     | nevents: 1000
[2025-11-25 05:01:39] 2025-11-25 04:00:34,001 | INFO     | neventsw: 0
[2025-11-25 05:01:39] 2025-11-25 04:00:34,001 | INFO     | pid: 22540
[2025-11-25 05:01:39] 2025-11-25 04:00:34,001 | INFO     | pgrp: 22540
[2025-11-25 05:01:39] 2025-11-25 04:00:34,001 | INFO     | corecount: 8
[2025-11-25 05:01:39] 2025-11-25 04:00:34,001 | INFO     | event service: False
[2025-11-25 05:01:39] 2025-11-25 04:00:34,001 | INFO     | sizes: {0: 2298585, 1: 2298784, 12: 2298784, 23: 2298812, 34: 2298840, 44: 2298868, 55: 2299024, 66: 2299052, 76: 2299080, 87: 2299136, 97: 2299426, 98: 2299734, 8
[2025-11-25 05:01:39] 2025-11-25 04:00:34,001 | INFO     | --------------------------------------------------
[2025-11-25 05:01:39] 2025-11-25 04:00:34,002 | INFO     | 
[2025-11-25 05:01:39] 2025-11-25 04:00:34,002 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-11-25 05:01:39] 2025-11-25 04:00:34,463 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 05:01:39] 2025-11-25 04:00:34,463 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 05:01:39] 2025-11-25 04:00:34,464 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 05:01:39] 2025-11-25 04:00:34,464 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 05:01:39] 2025-11-25 04:00:34,464 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 05:01:39] 2025-11-25 04:00:34,464 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 05:01:39] 2025-11-25 04:00:34,464 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 05:01:39] 2025-11-25 04:00:34,464 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 05:01:39] 2025-11-25 04:00:34,464 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 05:01:39] 2025-11-25 04:00:34,464 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 05:01:39] 2025-11-25 04:00:34,465 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 05:01:39] 2025-11-25 04:00:34,465 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 05:01:39] 2025-11-25 04:00:34,465 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 05:01:39] 2025-11-25 04:00:34,465 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 05:01:39] 2025-11-25 04:00:34,465 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 05:01:39] 2025-11-25 04:00:34,465 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 05:01:39] 2025-11-25 04:00:34,465 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 05:01:39] 2025-11-25 04:00:34,465 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 05:01:39] 2025-11-25 04:00:34,466 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 05:01:39] 2025-11-25 04:00:34,466 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 05:01:39] 2025-11-25 04:00:34,466 | INFO     | job 6893876486 has completed (purged errors)
[2025-11-25 05:01:39] 2025-11-25 04:00:34,466 | INFO     | overall cleanup function is called
[2025-11-25 05:01:39] 2025-11-25 04:00:35,487 | INFO     | --- collectZombieJob: --- 10, [22540]
[2025-11-25 05:01:39] 2025-11-25 04:00:35,487 | INFO     | zombie collector waiting for pid 22540
[2025-11-25 05:01:39] 2025-11-25 04:00:35,487 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 05:01:39] 2025-11-25 04:00:35,487 | INFO     | collected zombie processes
[2025-11-25 05:01:39] 2025-11-25 04:00:35,487 | INFO     | will attempt to kill all subprocesses of pid=22540
[2025-11-25 05:01:39] 2025-11-25 04:00:35,591 | INFO     | process IDs to be killed: [22540] (in reverse order)
[2025-11-25 05:01:39] 2025-11-25 04:00:36,349 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 05:01:39] 2025-11-25 04:00:36,350 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 05:01:39] 2025-11-25 04:00:36,352 | INFO     | did not find any defunct processes belonging to 22540
[2025-11-25 05:01:39] 2025-11-25 04:00:36,354 | INFO     | did not find any defunct processes belonging to 22540
[2025-11-25 05:01:39] 2025-11-25 04:00:36,398 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 05:01:39] 2025-11-25 04:00:36,398 | INFO     | ready for new job
[2025-11-25 05:01:39] 2025-11-25 04:00:36,398 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 05:01:39] 2025-11-25 04:00:36,404 | INFO     | ***************************************
[2025-11-25 05:01:39] 2025-11-25 04:00:36,404 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 05:01:39] 2025-11-25 04:00:36,404 | INFO     | ***************************************
[2025-11-25 05:01:39] 2025-11-25 04:00:36,404 | INFO     | 
[2025-11-25 05:01:39] 2025-11-25 04:00:36,405 | INFO     | pilot is running in a VM
[2025-11-25 05:01:39] 2025-11-25 04:00:36,405 | INFO     | architecture information:
[2025-11-25 05:01:39] 2025-11-25 04:00:36,412 | INFO     | executing command: cat /etc/os-release
[2025-11-25 05:01:39] 2025-11-25 04:00:36,640 | INFO     | cat /etc/os-release:
[2025-11-25 05:01:39] NAME="CentOS Linux"
[2025-11-25 05:01:39] VERSION="7 (Core)"
[2025-11-25 05:01:39] ID="centos"
[2025-11-25 05:01:39] ID_LIKE="rhel fedora"
[2025-11-25 05:01:39] VERSION_ID="7"
[2025-11-25 05:01:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 05:01:39] ANSI_COLOR="0;31"
[2025-11-25 05:01:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 05:01:39] HOME_URL="https://www.centos.org/"
[2025-11-25 05:01:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 05:01:39] 
[2025-11-25 05:01:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 05:01:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 05:01:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 05:01:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 05:01:39] 
[2025-11-25 05:01:39] 2025-11-25 04:00:36,640 | INFO     | ***************************************
[2025-11-25 05:01:39] 2025-11-25 04:00:37,144 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-11-25 05:01:39] 2025-11-25 04:00:37,333 | INFO     | sufficient remaining disk space (495330525184 B)
[2025-11-25 05:01:39] 2025-11-25 04:00:37,334 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 05:01:39] 2025-11-25 04:00:37,334 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 05:01:39] 2025-11-25 04:00:37,334 | INFO     | update_server=False
[2025-11-25 05:01:39] 2025-11-25 04:00:37,334 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 05:01:39] 2025-11-25 04:00:37,490 | INFO     | all data control threads have been joined
[2025-11-25 05:01:39] 2025-11-25 04:00:37,541 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 05:01:39] 2025-11-25 04:00:37,541 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 05:01:39] 2025-11-25 04:00:37,541 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 05:01:39] 2025-11-25 04:00:37,541 | INFO     | will abort loop
[2025-11-25 05:01:39] 2025-11-25 04:00:37,655 | INFO     | all job control threads have been joined
[2025-11-25 05:01:39] 2025-11-25 04:00:38,341 | INFO     | [job] retrieve thread has finished
[2025-11-25 05:01:39] 2025-11-25 04:00:38,375 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 05:01:39] 2025-11-25 04:00:38,391 | INFO     | all payload control threads have been joined
[2025-11-25 05:01:39] 2025-11-25 04:00:38,495 | INFO     | [data] control thread has finished
[2025-11-25 05:01:39] 2025-11-25 04:00:38,548 | INFO     | [job] job monitor thread has finished
[2025-11-25 05:01:39] 2025-11-25 04:00:38,661 | INFO     | [job] control thread has finished
[2025-11-25 05:01:39] 2025-11-25 04:00:38,758 | INFO     | [payload] validate_post thread has finished
[2025-11-25 05:01:39] 2025-11-25 04:00:38,827 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 05:01:39] 2025-11-25 04:00:38,971 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 05:01:39] 2025-11-25 04:00:39,040 | INFO     | [data] copytool_in thread has finished
[2025-11-25 05:01:39] 2025-11-25 04:00:39,242 | INFO     | [payload] failed_post thread has finished
[2025-11-25 05:01:39] 2025-11-25 04:00:39,397 | INFO     | [payload] control thread has finished
[2025-11-25 05:01:39] 2025-11-25 04:00:39,507 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 05:01:39] 2025-11-25 04:00:39,642 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 05:01:39] 2025-11-25 04:00:39,652 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 05:01:39] 2025-11-25 04:00:39,709 | INFO     | [job] validate thread has finished
[2025-11-25 05:01:39] 2025-11-25 04:00:39,768 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 05:01:39] 2025-11-25 04:00:39,977 | INFO     | [job] queue monitor thread has finished
[2025-11-25 05:01:39] 2025-11-25 04:00:40,834 | INFO     | [data] copytool_out thread has finished
[2025-11-25 05:01:39] 2025-11-25 04:00:43,518 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 05:01:39] 2025-11-25 04:01:07,143 | INFO     | PID=15959 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 05:01:39] 2025-11-25 04:01:07,144 | INFO     | .. there are 2 such processes running
[2025-11-25 05:01:39] 2025-11-25 04:01:07,145 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 05:01:39] 2025-11-25 04:01:07,145 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 05:01:39] 2025-11-25 04:01:07,145 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 05:01:39] 2025-11-25 04:01:29,779 | INFO     | [monitor] cgroup control has ended
[2025-11-25 05:01:39] 2025-11-25 04:01:30,519 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140470574257984)>', '<ExcThread(monitor, started 140469916919552)>']
[2025-11-25 05:01:39] 2025-11-25 04:01:31,287 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 05:01:39] 2025-11-25 04:01:31,287 | INFO     | [monitor] control thread has ended
[2025-11-25 05:01:39] 2025-11-25 04:01:35,544 | INFO     | all workflow threads have been joined
[2025-11-25 05:01:39] 2025-11-25 04:01:35,544 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 05:01:39] 2025-11-25 04:01:35,544 | INFO     | traces error code: 0
[2025-11-25 05:01:39] 2025-11-25 04:01:35,544 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 05:01:39] 2025-11-25 04:01:35,708 [wrapper] ==== pilot stdout END ====
[2025-11-25 05:01:39] 2025-11-25 04:01:35,798 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 05:01:39] 2025-11-25 04:01:35,923 [wrapper] pilotpid: 15959
[2025-11-25 05:01:39] 2025-11-25 04:01:36,041 [wrapper] Pilot exit status: 0
[2025-11-25 05:01:39] 2025-11-25 04:01:36,134 [wrapper] pandaids: 6893876486
[2025-11-25 05:01:39] 2025-11-25 04:01:36,599 [wrapper] cleanup supervisor_pilot 11075 15960
[2025-11-25 05:01:39] 2025-11-25 04:01:36,623 [wrapper] Test setup, not cleaning
[2025-11-25 05:01:39] 2025-11-25 04:01:36,709 [wrapper] apfmon messages muted
[2025-11-25 05:01:39] 2025-11-25 04:01:36,874 [wrapper] ==== wrapper stdout END ====
[2025-11-25 05:01:39] 2025-11-25 04:01:37,019 [wrapper] ==== wrapper stderr END ====
[2025-11-25 05:01:39]  *** Error codes and diagnostics ***
[2025-11-25 05:01:39]     "exeErrorCode": 0,
[2025-11-25 05:01:39]     "exeErrorDiag": "",
[2025-11-25 05:01:39]     "pilotErrorCode": 0,
[2025-11-25 05:01:39]     "pilotErrorDiag": "",
[2025-11-25 05:01:39]  *** Listing of results directory ***
[2025-11-25 05:01:39] total 1339588
[2025-11-25 05:01:39] -rw-r--r--. 1 boinc boinc    576529 Nov 20 18:01 pilot3.tar.gz
[2025-11-25 05:01:39] -rw-r--r--. 1 boinc boinc      5112 Nov 20 18:14 queuedata.json
[2025-11-25 05:01:39] -rwx------. 1 boinc boinc     36292 Nov 20 18:15 runpilot2-wrapper.sh
[2025-11-25 05:01:39] -rw-r--r--. 1 boinc boinc       100 Nov 24 06:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 05:01:39] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 06:03 run_atlas
[2025-11-25 05:01:39] -rw-r--r--. 1 boinc boinc       105 Nov 24 06:03 job.xml
[2025-11-25 05:01:39] -rw-r--r--. 2 boinc boinc 411383402 Nov 24 06:03 EVNT.47493127._000757.pool.root.1
[2025-11-25 05:01:39] -rw-r--r--. 1 boinc boinc      6391 Nov 24 06:03 init_data.xml
[2025-11-25 05:01:39] -rw-r--r--. 2 boinc boinc     15847 Nov 24 06:03 start_atlas.sh
[2025-11-25 05:01:39] drwxrwx--x. 2 boinc boinc        68 Nov 24 06:03 shared
[2025-11-25 05:01:39] -rw-r--r--. 2 boinc boinc    590100 Nov 24 06:03 input.tar.gz
[2025-11-25 05:01:39] -rw-r--r--. 1 boinc boinc         0 Nov 24 06:03 boinc_lockfile
[2025-11-25 05:01:39] -rw-r--r--. 1 boinc boinc      2785 Nov 24 06:04 pandaJob.out
[2025-11-25 05:01:39] -rw-------. 1 boinc boinc    989786 Nov 24 06:08 agis_schedconf.cvmfs.json
[2025-11-25 05:01:39] drwx------. 5 boinc boinc      4096 Nov 24 06:08 pilot3
[2025-11-25 05:01:39] -rw-r--r--. 1 boinc boinc       533 Nov 25 04:31 boinc_task_state.xml
[2025-11-25 05:01:39] -rw-------. 1 boinc boinc 929645532 Nov 25 04:57 HITS.47523449._007562.pool.root.1
[2025-11-25 05:01:39] -rw-------. 1 boinc boinc      1035 Nov 25 04:58 memory_monitor_summary.json
[2025-11-25 05:01:39] -rw-------. 1 boinc boinc   1516227 Nov 25 04:58 agis_ddmendpoints.agis.ALL.json
[2025-11-25 05:01:39] -rw-------. 1 boinc boinc   2442523 Nov 25 04:58 log.47523449._007562.job.log.tgz.1
[2025-11-25 05:01:39] -rw-------. 1 boinc boinc      7943 Nov 25 05:00 heartbeat.json
[2025-11-25 05:01:39] -rw-------. 1 boinc boinc        95 Nov 25 05:01 pilot_heartbeat.json
[2025-11-25 05:01:39] -rw-------. 1 boinc boinc      5070 Nov 25 05:01 pilotlog.txt
[2025-11-25 05:01:39] -rw-------. 1 boinc boinc  10959951 Nov 25 05:01 log.47523449._007562.job.log.1
[2025-11-25 05:01:39] -rw-------. 1 boinc boinc       353 Nov 25 05:01 output.list
[2025-11-25 05:01:39] -rw-r--r--. 1 boinc boinc      8192 Nov 25 05:01 boinc_mmap_file
[2025-11-25 05:01:39] -rw-r--r--. 1 boinc boinc        29 Nov 25 05:01 wrapper_checkpoint.txt
[2025-11-25 05:01:39] -rw-r--r--. 1 boinc boinc       620 Nov 25 05:01 runtime_log
[2025-11-25 05:01:39] -rw-------. 1 boinc boinc  13424640 Nov 25 05:01 result.tar.gz
[2025-11-25 05:01:39] -rw-------. 1 boinc boinc       662 Nov 25 05:01 YM5MDmpQNg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmfLIKDmtiFlSn.diag
[2025-11-25 05:01:39] -rw-r--r--. 1 boinc boinc      8817 Nov 25 05:01 runtime_log.err
[2025-11-25 05:01:39] -rw-r--r--. 1 boinc boinc     21497 Nov 25 05:01 stderr.txt
[2025-11-25 05:01:39] HITS file was successfully produced:
[2025-11-25 05:01:39] -rw-------. 1 boinc boinc 929645532 Nov 25 04:57 shared/HITS.pool.root.1
[2025-11-25 05:01:39]  *** Contents of shared directory: ***
[2025-11-25 05:01:39] total 1323312
[2025-11-25 05:01:39] -rw-r--r--. 2 boinc boinc 411383402 Nov 24 06:03 ATLAS.root_0
[2025-11-25 05:01:39] -rw-r--r--. 2 boinc boinc     15847 Nov 24 06:03 start_atlas.sh
[2025-11-25 05:01:39] -rw-r--r--. 2 boinc boinc    590100 Nov 24 06:03 input.tar.gz
[2025-11-25 05:01:39] -rw-------. 1 boinc boinc 929645532 Nov 25 04:57 HITS.pool.root.1
[2025-11-25 05:01:39] -rw-------. 1 boinc boinc  13424640 Nov 25 05:01 result.tar.gz
05:01:40 (12166): run_atlas exited; CPU time 345275.309473
05:01:40 (12166): called boinc_finish(0)

</stderr_txt>
]]>

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