Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:35:33 (323745): wrapper (7.7.26015): starting
04:35:33 (323745): wrapper: running run_atlas (--nthreads 4)
[2025-11-23 04:35:33] Arguments: --nthreads 4
[2025-11-23 04:35:33] Threads: 4
[2025-11-23 04:35:33] Checking for CVMFS
[2025-11-23 04:35:33] No cvmfs_config command found, will try listing directly
[2025-11-23 04:35:33] CVMFS is ok
[2025-11-23 04:35:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 04:35:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 04:35:33] Further information can be found at the LHC@home message board.
[2025-11-23 04:35:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 04:35:33] Checking for apptainer binary...
[2025-11-23 04:35:33] which: no apptainer in ((null))
[2025-11-23 04:35:33] apptainer is not installed, using version from CVMFS
[2025-11-23 04:35:33] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 04:35:34] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot48/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2025-11-23 04:35:34] apptainer works
[2025-11-23 04:35:34] Set ATHENA_PROC_NUMBER=4
[2025-11-23 04:35:34] Set ATHENA_CORE_NUMBER=4
[2025-11-23 04:35:34] Starting ATLAS job with PandaID=6893876383
[2025-11-23 04:35:34] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot48/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 23:04:56]  *** The last 200 lines of the pilot log: ***
[2025-11-23 23:04:56] 2025-11-23 21:12:48,209 | INFO     | time since job start (63424s) is within the limit (172800.0s)
[2025-11-23 23:04:56] 2025-11-23 21:12:48,400 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-23 23:04:56] 2025-11-23 21:12:48,409 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2650.4929843750006
[2025-11-23 23:04:56] 2025-11-23 21:12:48,421 | INFO     | using path: /scratch/boinc/var/slot48/slots/0/PanDA_Pilot-6893876383/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 23:04:56] 2025-11-23 21:12:48,422 | INFO     | extracted standard info from prmon json
[2025-11-23 23:04:56] 2025-11-23 21:12:48,422 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 23:04:56] 2025-11-23 21:12:48,422 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 23:04:56] 2025-11-23 21:12:48,439 | INFO     | fitting pss+swap vs Time
[2025-11-23 23:04:56] 2025-11-23 21:12:48,440 | INFO     | sum of square deviations: 348803890177.3762
[2025-11-23 23:04:56] 2025-11-23 21:12:48,461 | INFO     | sum of deviations: 826910044249.5144
[2025-11-23 23:04:56] 2025-11-23 21:12:48,461 | INFO     | mean x: 1763900661.5798078
[2025-11-23 23:04:56] 2025-11-23 21:12:48,461 | INFO     | mean y: 2276807.0721153845
[2025-11-23 23:04:56] 2025-11-23 21:12:48,461 | INFO     | intersect: -4179405838.0869613
[2025-11-23 23:04:56] 2025-11-23 21:12:48,463 | INFO     | chi2: 4.552351302885704
[2025-11-23 23:04:56] 2025-11-23 21:12:48,464 | INFO     | sum of square deviations: 343797272782.344
[2025-11-23 23:04:56] 2025-11-23 21:12:48,484 | INFO     | sum of deviations: 1067942924277.0624
[2025-11-23 23:04:56] 2025-11-23 21:12:48,485 | INFO     | mean x: 1763900509.0801933
[2025-11-23 23:04:56] 2025-11-23 21:12:48,485 | INFO     | mean y: 2284142.890821256
[2025-11-23 23:04:56] 2025-11-23 21:12:48,485 | INFO     | intersect: -5476948000.388827
[2025-11-23 23:04:56] 2025-11-23 21:12:48,486 | INFO     | chi2: 1.9428090792637602
[2025-11-23 23:04:56] 2025-11-23 21:12:48,486 | INFO     | current chi2=1.9428090792637602 (change=57.322953568363076 %)
[2025-11-23 23:04:56] 2025-11-23 21:12:48,488 | INFO     | sum of square deviations: 338838795824.8115
[2025-11-23 23:04:56] 2025-11-23 21:12:48,508 | INFO     | sum of deviations: 1088868398149.5116
[2025-11-23 23:04:56] 2025-11-23 21:12:48,508 | INFO     | mean x: 1763900356.5805826
[2025-11-23 23:04:56] 2025-11-23 21:12:48,508 | INFO     | mean y: 2284783.9155339804
[2025-11-23 23:04:56] 2025-11-23 21:12:48,508 | INFO     | intersect: -5666060693.142177
[2025-11-23 23:04:56] 2025-11-23 21:12:48,510 | INFO     | chi2: 1.8577158768465083
[2025-11-23 23:04:56] 2025-11-23 21:12:48,510 | INFO     | current chi2=1.8577158768465083 (change=4.379905536034377 %)
[2025-11-23 23:04:56] 2025-11-23 21:12:48,510 | INFO     | right removable region: 1029
[2025-11-23 23:04:56] 2025-11-23 21:12:48,511 | INFO     | sum of square deviations: 343797222152.34357
[2025-11-23 23:04:56] 2025-11-23 21:12:48,532 | INFO     | sum of deviations: 641840688638.9565
[2025-11-23 23:04:56] 2025-11-23 21:12:48,532 | INFO     | mean x: 1763900814.0801933
[2025-11-23 23:04:56] 2025-11-23 21:12:48,532 | INFO     | mean y: 2282435.217391304
[2025-11-23 23:04:56] 2025-11-23 21:12:48,532 | INFO     | intersect: -3290773006.336966
[2025-11-23 23:04:56] 2025-11-23 21:12:48,533 | INFO     | chi2: 2.833791725267149
[2025-11-23 23:04:56] 2025-11-23 21:12:48,534 | INFO     | current chi2=2.833791725267149 (change=37.7510315719521 %)
[2025-11-23 23:04:56] 2025-11-23 21:12:48,535 | INFO     | sum of square deviations: 338838694564.8113
[2025-11-23 23:04:56] 2025-11-23 21:12:48,555 | INFO     | sum of deviations: 605270215520.2573
[2025-11-23 23:04:56] 2025-11-23 21:12:48,555 | INFO     | mean x: 1763900966.5805826
[2025-11-23 23:04:56] 2025-11-23 21:12:48,555 | INFO     | mean y: 2283559.5029126215
[2025-11-23 23:04:56] 2025-11-23 21:12:48,556 | INFO     | intersect: -3148586560.4810004
[2025-11-23 23:04:56] 2025-11-23 21:12:48,557 | INFO     | chi2: 2.8058401071199937
[2025-11-23 23:04:56] 2025-11-23 21:12:48,557 | INFO     | current chi2=2.8058401071199937 (change=0.9863681193620695 %)
[2025-11-23 23:04:56] 2025-11-23 21:12:48,557 | INFO     | left removable region: 20
[2025-11-23 23:04:56] 2025-11-23 21:12:48,558 | INFO     | sum of square deviations: 318533435190.17255
[2025-11-23 23:04:56] 2025-11-23 21:12:48,578 | INFO     | sum of deviations: 816576431990.249
[2025-11-23 23:04:56] 2025-11-23 21:12:48,578 | INFO     | mean x: 1763900936.0822597
[2025-11-23 23:04:56] 2025-11-23 21:12:48,578 | INFO     | mean y: 2293175.7680872153
[2025-11-23 23:04:56] 2025-11-23 21:12:48,578 | INFO     | intersect: -4519555313.733118
[2025-11-23 23:04:56] 2025-11-23 21:12:48,579 | INFO     | chi2: 0.08853988534509837
[2025-11-23 23:04:56] 2025-11-23 21:12:48,579 | INFO     | current memory leak: 2.56 B/s (using 1009 data points, chi2=0.09)
[2025-11-23 23:04:56] 2025-11-23 21:12:48,581 | INFO     | could have reported an average CPU frequency of 2637 MHz (38 samples)
[2025-11-23 23:04:56] 2025-11-23 21:12:48,581 | INFO     | ..............................
[2025-11-23 23:04:56] 2025-11-23 21:12:48,581 | INFO     | . Timing measurements:
[2025-11-23 23:04:56] 2025-11-23 21:12:48,581 | INFO     | . get job = 0 s
[2025-11-23 23:04:56] 2025-11-23 21:12:48,581 | INFO     | . initial setup = 1 s
[2025-11-23 23:04:56] 2025-11-23 21:12:48,581 | INFO     | . payload setup = 6 s
[2025-11-23 23:04:56] 2025-11-23 21:12:48,581 | INFO     | . stage-in = 0 s
[2025-11-23 23:04:56] 2025-11-23 21:12:48,581 | INFO     | . payload execution = 63384 s
[2025-11-23 23:04:56] 2025-11-23 21:12:48,581 | INFO     | . stage-out = 2 s
[2025-11-23 23:04:56] 2025-11-23 21:12:48,581 | INFO     | . log creation = 0 s
[2025-11-23 23:04:56] 2025-11-23 21:12:48,581 | INFO     | ..............................
[2025-11-23 23:04:56] 2025-11-23 21:12:48,673 | INFO     | 
[2025-11-23 23:04:56] 2025-11-23 21:12:48,673 | INFO     | job summary report
[2025-11-23 23:04:56] 2025-11-23 21:12:48,673 | INFO     | --------------------------------------------------
[2025-11-23 23:04:56] 2025-11-23 21:12:48,673 | INFO     | PanDA job id: 6893876383
[2025-11-23 23:04:56] 2025-11-23 21:12:48,673 | INFO     | task id: 47523449
[2025-11-23 23:04:56] 2025-11-23 21:12:48,673 | INFO     | errors: (none)
[2025-11-23 23:04:56] 2025-11-23 21:12:48,673 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 23:04:56] 2025-11-23 21:12:48,673 | INFO     | pilot state: finished 
[2025-11-23 23:04:56] 2025-11-23 21:12:48,673 | INFO     | transexitcode: 0
[2025-11-23 23:04:56] 2025-11-23 21:12:48,674 | INFO     | exeerrorcode: 0
[2025-11-23 23:04:56] 2025-11-23 21:12:48,674 | INFO     | exeerrordiag: 
[2025-11-23 23:04:56] 2025-11-23 21:12:48,674 | INFO     | exitcode: 0
[2025-11-23 23:04:56] 2025-11-23 21:12:48,674 | INFO     | exitmsg: OK
[2025-11-23 23:04:56] 2025-11-23 21:12:48,674 | INFO     | cpuconsumptiontime: 242428 s
[2025-11-23 23:04:56] 2025-11-23 21:12:48,674 | INFO     | nevents: 1000
[2025-11-23 23:04:56] 2025-11-23 21:12:48,674 | INFO     | neventsw: 0
[2025-11-23 23:04:56] 2025-11-23 21:12:48,674 | INFO     | pid: 356977
[2025-11-23 23:04:56] 2025-11-23 21:12:48,674 | INFO     | pgrp: 356977
[2025-11-23 23:04:56] 2025-11-23 21:12:48,674 | INFO     | corecount: 4
[2025-11-23 23:04:56] 2025-11-23 21:12:48,674 | INFO     | event service: False
[2025-11-23 23:04:56] 2025-11-23 21:12:48,674 | INFO     | sizes: {0: 2298767, 5: 2299029, 11: 2299085, 63395: 2353625, 63397: 2362641, 63400: 2362697, 63409: 2363071}
[2025-11-23 23:04:56] 2025-11-23 21:12:48,674 | INFO     | --------------------------------------------------
[2025-11-23 23:04:56] 2025-11-23 21:12:48,674 | INFO     | 
[2025-11-23 23:04:56] 2025-11-23 21:12:48,675 | INFO     | executing command: ls -lF /scratch/boinc/var/slot48/slots/0
[2025-11-23 23:04:56] 2025-11-23 21:12:48,693 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 23:04:56] 2025-11-23 21:12:48,693 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 23:04:56] 2025-11-23 21:12:48,694 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 23:04:56] 2025-11-23 21:12:48,694 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 23:04:56] 2025-11-23 21:12:48,694 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 23:04:56] 2025-11-23 21:12:48,694 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 23:04:56] 2025-11-23 21:12:48,694 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 23:04:56] 2025-11-23 21:12:48,694 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 23:04:56] 2025-11-23 21:12:48,694 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 23:04:56] 2025-11-23 21:12:48,694 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 23:04:56] 2025-11-23 21:12:48,694 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 23:04:56] 2025-11-23 21:12:48,694 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 23:04:56] 2025-11-23 21:12:48,694 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 23:04:56] 2025-11-23 21:12:48,694 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 23:04:56] 2025-11-23 21:12:48,695 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 23:04:56] 2025-11-23 21:12:48,695 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 23:04:56] 2025-11-23 21:12:48,695 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 23:04:56] 2025-11-23 21:12:48,695 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 23:04:56] 2025-11-23 21:12:48,695 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 23:04:56] 2025-11-23 21:12:48,695 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 23:04:56] 2025-11-23 21:12:48,695 | INFO     | job 6893876383 has completed (purged errors)
[2025-11-23 23:04:56] 2025-11-23 21:12:48,695 | INFO     | overall cleanup function is called
[2025-11-23 23:04:56] 2025-11-23 21:12:49,707 | INFO     | --- collectZombieJob: --- 10, [356977]
[2025-11-23 23:04:56] 2025-11-23 21:12:49,708 | INFO     | zombie collector waiting for pid 356977
[2025-11-23 23:04:56] 2025-11-23 21:12:49,708 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 23:04:56] 2025-11-23 21:12:49,708 | INFO     | collected zombie processes
[2025-11-23 23:04:56] 2025-11-23 21:12:49,708 | INFO     | will attempt to kill all subprocesses of pid=356977
[2025-11-23 23:04:56] 2025-11-23 21:12:50,084 | INFO     | process IDs to be killed: [356977] (in reverse order)
[2025-11-23 23:04:56] 2025-11-23 21:12:50,192 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 23:04:56] 2025-11-23 21:12:50,192 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 23:04:56] 2025-11-23 21:12:50,205 | INFO     | did not find any defunct processes belonging to 356977
[2025-11-23 23:04:56] 2025-11-23 21:12:50,217 | INFO     | did not find any defunct processes belonging to 356977
[2025-11-23 23:04:56] 2025-11-23 21:12:50,218 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 23:04:56] 2025-11-23 21:12:50,218 | INFO     | ready for new job
[2025-11-23 23:04:56] 2025-11-23 21:12:50,218 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 23:04:56] 2025-11-23 21:12:50,224 | INFO     | ***************************************
[2025-11-23 23:04:56] 2025-11-23 21:12:50,225 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 23:04:56] 2025-11-23 21:12:50,225 | INFO     | ***************************************
[2025-11-23 23:04:56] 2025-11-23 21:12:50,225 | INFO     | 
[2025-11-23 23:04:56] 2025-11-23 21:12:50,229 | INFO     | architecture information:
[2025-11-23 23:04:56] 2025-11-23 21:12:50,229 | INFO     | executing command: cat /etc/os-release
[2025-11-23 23:04:56] 2025-11-23 21:12:50,243 | INFO     | cat /etc/os-release:
[2025-11-23 23:04:56] NAME="CentOS Linux"
[2025-11-23 23:04:56] VERSION="7 (Core)"
[2025-11-23 23:04:56] ID="centos"
[2025-11-23 23:04:56] ID_LIKE="rhel fedora"
[2025-11-23 23:04:56] VERSION_ID="7"
[2025-11-23 23:04:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 23:04:56] ANSI_COLOR="0;31"
[2025-11-23 23:04:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 23:04:56] HOME_URL="https://www.centos.org/"
[2025-11-23 23:04:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 23:04:56] 
[2025-11-23 23:04:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 23:04:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 23:04:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 23:04:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 23:04:56] 
[2025-11-23 23:04:56] 2025-11-23 21:12:50,244 | INFO     | ***************************************
[2025-11-23 23:04:56] 2025-11-23 21:12:50,747 | INFO     | executing command: df -mP /scratch/boinc/var/slot48/slots/0
[2025-11-23 23:04:56] 2025-11-23 21:12:50,761 | INFO     | sufficient remaining disk space (682069327872 B)
[2025-11-23 23:04:56] 2025-11-23 21:12:50,762 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 23:04:56] 2025-11-23 21:12:50,762 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 23:04:56] 2025-11-23 21:12:50,762 | INFO     | update_server=False
[2025-11-23 23:04:56] 2025-11-23 21:12:50,762 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 23:04:56] 2025-11-23 21:12:50,762 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 23:04:56] 2025-11-23 21:12:50,876 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 23:04:56] 2025-11-23 21:12:51,038 | INFO     | all payload control threads have been joined
[2025-11-23 23:04:56] 2025-11-23 21:12:51,204 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 23:04:56] 2025-11-23 21:12:51,205 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 23:04:56] 2025-11-23 21:12:51,205 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 23:04:56] 2025-11-23 21:12:51,205 | INFO     | will abort loop
[2025-11-23 23:04:56] 2025-11-23 21:12:51,767 | INFO     | [job] retrieve thread has finished
[2025-11-23 23:04:56] 2025-11-23 21:12:51,778 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 23:04:56] 2025-11-23 21:12:51,814 | INFO     | [data] copytool_in thread has finished
[2025-11-23 23:04:56] 2025-11-23 21:12:51,824 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 23:04:56] 2025-11-23 21:12:51,851 | INFO     | all data control threads have been joined
[2025-11-23 23:04:56] 2025-11-23 21:12:51,926 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 23:04:56] 2025-11-23 21:12:51,952 | INFO     | [payload] validate_post thread has finished
[2025-11-23 23:04:56] 2025-11-23 21:12:52,044 | INFO     | [payload] control thread has finished
[2025-11-23 23:04:56] 2025-11-23 21:12:52,149 | INFO     | [payload] failed_post thread has finished
[2025-11-23 23:04:56] 2025-11-23 21:12:52,206 | INFO     | [job] job monitor thread has finished
[2025-11-23 23:04:56] 2025-11-23 21:12:52,323 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 23:04:56] 2025-11-23 21:12:52,353 | INFO     | all job control threads have been joined
[2025-11-23 23:04:56] 2025-11-23 21:12:52,565 | INFO     | [job] validate thread has finished
[2025-11-23 23:04:56] 2025-11-23 21:12:52,768 | INFO     | [data] copytool_out thread has finished
[2025-11-23 23:04:56] 2025-11-23 21:12:52,855 | INFO     | [data] control thread has finished
[2025-11-23 23:04:56] 2025-11-23 21:12:53,359 | INFO     | [job] control thread has finished
[2025-11-23 23:04:56] 2025-11-23 21:12:53,683 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 23:04:56] 2025-11-23 21:12:54,686 | INFO     | [job] queue monitor thread has finished
[2025-11-23 23:04:56] 2025-11-23 21:12:54,883 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 23:04:56] 2025-11-23 21:13:21,782 | INFO     | PID=333716 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-23 23:04:56] 2025-11-23 21:13:21,782 | INFO     | .. there are 5 such processes running
[2025-11-23 23:04:56] 2025-11-23 21:13:21,783 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 23:04:56] 2025-11-23 21:13:21,783 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 23:04:56] 2025-11-23 21:13:21,783 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 23:04:56] 2025-11-23 21:13:29,662 | INFO     | [monitor] cgroup control has ended
[2025-11-23 23:04:56] 2025-11-23 21:13:30,016 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23141290669888)>', '<ExcThread(monitor, started 23141050971904)>']
[2025-11-23 23:04:56] 2025-11-23 21:13:30,818 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 23:04:56] 2025-11-23 21:13:30,819 | INFO     | [monitor] control thread has ended
[2025-11-23 23:04:56] 2025-11-23 21:13:35,040 | INFO     | all workflow threads have been joined
[2025-11-23 23:04:56] 2025-11-23 21:13:35,041 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 23:04:56] 2025-11-23 21:13:35,041 | INFO     | traces error code: 0
[2025-11-23 23:04:56] 2025-11-23 21:13:35,041 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 23:04:56] 2025-11-23 21:13:35,196 [wrapper] ==== pilot stdout END ====
[2025-11-23 23:04:56] 2025-11-23 21:13:35,199 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 23:04:56] 2025-11-23 21:13:35,202 [wrapper] pilotpid: 333716
[2025-11-23 23:04:56] 2025-11-23 21:13:35,205 [wrapper] Pilot exit status: 0
[2025-11-23 23:04:56] 2025-11-23 21:13:35,214 [wrapper] pandaids: 6893876383
[2025-11-23 23:04:56] 2025-11-23 21:13:35,293 [wrapper] cleanup supervisor_pilot 1259099 333717
[2025-11-23 23:04:56] 2025-11-23 21:13:35,297 [wrapper] Test setup, not cleaning
[2025-11-23 23:04:56] 2025-11-23 21:13:35,300 [wrapper] apfmon messages muted
[2025-11-23 23:04:56] 2025-11-23 21:13:35,303 [wrapper] ==== wrapper stdout END ====
[2025-11-23 23:04:56] 2025-11-23 21:13:35,306 [wrapper] ==== wrapper stderr END ====
[2025-11-23 23:04:56]  *** Error codes and diagnostics ***
[2025-11-23 23:04:56]     "exeErrorCode": 0,
[2025-11-23 23:04:56]     "exeErrorDiag": "",
[2025-11-23 23:04:56]     "pilotErrorCode": 0,
[2025-11-23 23:04:56]     "pilotErrorDiag": "",
[2025-11-23 23:04:56]  *** Listing of results directory ***
[2025-11-23 23:04:56] total 1316512
[2025-11-23 23:04:56] -rw-r--r-- 1 boinc boinc    576529 Nov 20 17:47 pilot3.tar.gz
[2025-11-23 23:04:56] -rwx------ 1 boinc boinc     36292 Nov 20 17:53 runpilot2-wrapper.sh
[2025-11-23 23:04:56] -rw-r--r-- 1 boinc boinc      5112 Nov 20 17:53 queuedata.json
[2025-11-23 23:04:56] -rw-r--r-- 1 boinc boinc       100 Nov 23 04:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 23:04:56] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 04:35 run_atlas
[2025-11-23 23:04:56] -rw-r--r-- 1 boinc boinc       105 Nov 23 04:35 job.xml
[2025-11-23 23:04:56] -rw-r--r-- 2 boinc boinc 409921954 Nov 23 04:35 EVNT.47493127._000751.pool.root.1
[2025-11-23 23:04:56] -rw-r--r-- 1 boinc boinc      6632 Nov 23 04:35 init_data.xml
[2025-11-23 23:04:56] -rw-r--r-- 2 boinc boinc     15847 Nov 23 04:35 start_atlas.sh
[2025-11-23 23:04:56] drwxrwx--x 2 boinc boinc      4096 Nov 23 04:35 shared
[2025-11-23 23:04:56] -rw-r--r-- 2 boinc boinc    590098 Nov 23 04:35 input.tar.gz
[2025-11-23 23:04:56] -rw-r--r-- 1 boinc boinc         0 Nov 23 04:35 boinc_lockfile
[2025-11-23 23:04:56] -rw-r--r-- 1 boinc boinc      2785 Nov 23 04:35 pandaJob.out
[2025-11-23 23:04:56] -rw------- 1 boinc boinc    989784 Nov 23 04:35 agis_schedconf.cvmfs.json
[2025-11-23 23:04:56] drwx------ 5 boinc boinc      4096 Nov 23 04:35 pilot3
[2025-11-23 23:04:56] -rw-r--r-- 1 boinc boinc       530 Nov 23 22:05 boinc_task_state.xml
[2025-11-23 23:04:56] -rw------- 1 boinc boinc 913086992 Nov 23 22:11 HITS.47523449._007510.pool.root.1
[2025-11-23 23:04:56] -rw------- 1 boinc boinc      1045 Nov 23 22:12 memory_monitor_summary.json
[2025-11-23 23:04:56] -rw------- 1 boinc boinc   1526164 Nov 23 22:12 agis_ddmendpoints.agis.ALL.json
[2025-11-23 23:04:56] -rw------- 1 boinc boinc   1761255 Nov 23 22:12 log.47523449._007510.job.log.tgz.1
[2025-11-23 23:04:56] -rw------- 1 boinc boinc      8629 Nov 23 22:12 heartbeat.json
[2025-11-23 23:04:56] -rw------- 1 boinc boinc        95 Nov 23 22:13 pilot_heartbeat.json
[2025-11-23 23:04:56] -rw------- 1 boinc boinc      5018 Nov 23 22:13 pilotlog.txt
[2025-11-23 23:04:56] -rw------- 1 boinc boinc   8828590 Nov 23 22:13 log.47523449._007510.job.log.1
[2025-11-23 23:04:56] -rw------- 1 boinc boinc       353 Nov 23 22:13 output.list
[2025-11-23 23:04:56] -rw-r--r-- 1 boinc boinc       620 Nov 23 22:13 runtime_log
[2025-11-23 23:04:56] -rw------- 1 boinc boinc  10608640 Nov 23 22:13 result.tar.gz
[2025-11-23 23:04:56] -rw-r--r-- 1 boinc boinc      9206 Nov 23 22:13 runtime_log.err
[2025-11-23 23:04:56] -rw------- 1 boinc boinc       670 Nov 23 22:13 orHKDmo5Mg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5KIKDmzS1oKo.diag
[2025-11-23 23:04:56] -rw-r--r-- 1 boinc boinc        27 Nov 23 23:04 wrapper_checkpoint.txt
[2025-11-23 23:04:56] -rw-r--r-- 1 boinc boinc      8192 Nov 23 23:04 boinc_mmap_file
[2025-11-23 23:04:56] -rw-r--r-- 1 boinc boinc     21074 Nov 23 23:04 stderr.txt
[2025-11-23 23:04:56] HITS file was successfully produced:
[2025-11-23 23:04:56] -rw------- 1 boinc boinc 913086992 Nov 23 22:11 shared/HITS.pool.root.1
[2025-11-23 23:04:56]  *** Contents of shared directory: ***
[2025-11-23 23:04:56] total 1302968
[2025-11-23 23:04:56] -rw-r--r-- 2 boinc boinc 409921954 Nov 23 04:35 ATLAS.root_0
[2025-11-23 23:04:56] -rw-r--r-- 2 boinc boinc     15847 Nov 23 04:35 start_atlas.sh
[2025-11-23 23:04:56] -rw-r--r-- 2 boinc boinc    590098 Nov 23 04:35 input.tar.gz
[2025-11-23 23:04:56] -rw------- 1 boinc boinc 913086992 Nov 23 22:11 HITS.pool.root.1
[2025-11-23 23:04:56] -rw------- 1 boinc boinc  10608640 Nov 23 22:13 result.tar.gz
23:04:58 (323745): run_atlas exited; CPU time 244766.968925
23:04:58 (323745): called boinc_finish(0)

</stderr_txt>
]]>

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