Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:20:37 (179304): wrapper (7.7.26015): starting
05:20:37 (179304): wrapper: running run_atlas (--nthreads 3)
[2025-11-21 05:20:37] Arguments: --nthreads 3
[2025-11-21 05:20:37] Threads: 3
[2025-11-21 05:20:37] Checking for CVMFS
[2025-11-21 05:20:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 05:20:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 05:20:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 05:20:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 05:20:37] 2.9.2.0 16720 927 70016 153106 2 88 34452637 36864000 0 130560 0 13092321 100.000 19116 817 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-21 05:20:37] CVMFS is ok
[2025-11-21 05:20:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 05:20:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 05:20:37] Further information can be found at the LHC@home message board.
[2025-11-21 05:20:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 05:20:37] Checking for apptainer binary...
[2025-11-21 05:20:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 05:20:37] Running /usr/bin/apptainer --version
[2025-11-21 05:20:37] apptainer version 1.4.1-1.1
[2025-11-21 05:20:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 05:20:38] thA335
[2025-11-21 05:20:38] apptainer works
[2025-11-21 05:20:38] Set ATHENA_PROC_NUMBER=3
[2025-11-21 05:20:38] Set ATHENA_CORE_NUMBER=3
[2025-11-21 05:20:38] Starting ATLAS job with PandaID=6893857652
[2025-11-21 05:20:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 05:24:52]  *** The last 200 lines of the pilot log: ***
[2025-11-21 05:24:52] NAME="CentOS Linux"
[2025-11-21 05:24:52] VERSION="7 (Core)"
[2025-11-21 05:24:52] ID="centos"
[2025-11-21 05:24:52] ID_LIKE="rhel fedora"
[2025-11-21 05:24:52] VERSION_ID="7"
[2025-11-21 05:24:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 05:24:52] ANSI_COLOR="0;31"
[2025-11-21 05:24:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 05:24:52] HOME_URL="https://www.centos.org/"
[2025-11-21 05:24:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 05:24:52] 
[2025-11-21 05:24:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 05:24:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 05:24:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 05:24:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 05:24:52] 
[2025-11-21 05:24:52] 2025-11-21 04:23:56,073 | INFO     | ***************************************
[2025-11-21 05:24:52] 2025-11-21 04:23:56,576 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-21 05:24:52] 2025-11-21 04:23:56,590 | INFO     | sufficient remaining disk space (827179663360 B)
[2025-11-21 05:24:52] 2025-11-21 04:23:56,591 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 05:24:52] 2025-11-21 04:23:56,591 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 05:24:52] 2025-11-21 04:23:56,591 | INFO     | update_server=False
[2025-11-21 05:24:52] 2025-11-21 04:23:56,591 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 05:24:52] 2025-11-21 04:23:56,591 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 05:24:52] 2025-11-21 04:23:56,699 | INFO     | all data control threads have been joined
[2025-11-21 05:24:52] 2025-11-21 04:23:56,906 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-21 05:24:52] 2025-11-21 04:23:56,907 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-21 05:24:52] 2025-11-21 04:23:56,907 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 05:24:52] 2025-11-21 04:23:56,907 | INFO     | will abort loop
[2025-11-21 05:24:52] 2025-11-21 04:23:57,597 | INFO     | [job] retrieve thread has finished
[2025-11-21 05:24:52] 2025-11-21 04:23:57,627 | INFO     | [data] copytool_in thread has finished
[2025-11-21 05:24:52] 2025-11-21 04:23:57,649 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 05:24:52] 2025-11-21 04:23:57,706 | INFO     | [data] control thread has finished
[2025-11-21 05:24:52] 2025-11-21 04:23:57,901 | INFO     | [payload] failed_post thread has finished
[2025-11-21 05:24:52] 2025-11-21 04:23:57,913 | INFO     | [job] job monitor thread has finished
[2025-11-21 05:24:52] 2025-11-21 04:23:57,995 | INFO     | all job control threads have been joined
[2025-11-21 05:24:52] 2025-11-21 04:23:58,007 | INFO     | all payload control threads have been joined
[2025-11-21 05:24:52] 2025-11-21 04:23:58,315 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 05:24:52] 2025-11-21 04:23:58,367 | INFO     | [payload] validate_post thread has finished
[2025-11-21 05:24:52] 2025-11-21 04:23:58,597 | INFO     | [data] copytool_out thread has finished
[2025-11-21 05:24:52] 2025-11-21 04:23:58,934 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 05:24:52] 2025-11-21 04:23:59,001 | INFO     | [job] control thread has finished
[2025-11-21 05:24:52] 2025-11-21 04:23:59,002 | INFO     | [job] validate thread has finished
[2025-11-21 05:24:52] 2025-11-21 04:23:59,011 | INFO     | [payload] control thread has finished
[2025-11-21 05:24:52] 2025-11-21 04:23:59,092 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 05:24:52] 2025-11-21 04:23:59,484 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 05:24:52] 2025-11-21 04:23:59,711 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 05:24:52] 2025-11-21 04:24:00,490 | INFO     | [job] queue monitor thread has finished
[2025-11-21 05:24:52] 2025-11-21 04:24:03,718 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 05:24:52] 2025-11-21 04:24:27,605 | INFO     | PID=183029 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-21 05:24:52] 2025-11-21 04:24:27,605 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 05:24:52] 2025-11-21 04:24:27,605 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 05:24:52] 2025-11-21 04:24:27,605 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 05:24:52] 2025-11-21 04:24:46,775 | INFO     | [monitor] cgroup control has ended
[2025-11-21 05:24:52] 2025-11-21 04:24:47,571 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139636522407744)>', '<ExcThread(monitor, started 139635854386944)>']
[2025-11-21 05:24:52] 2025-11-21 04:24:47,712 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 05:24:52] 2025-11-21 04:24:47,712 | INFO     | [monitor] control thread has ended
[2025-11-21 05:24:52] 2025-11-21 04:24:52,597 | INFO     | all workflow threads have been joined
[2025-11-21 05:24:52] 2025-11-21 04:24:52,713 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 05:24:52] 2025-11-21 04:24:52,713 | INFO     | traces error code: 0
[2025-11-21 05:24:52] 2025-11-21 04:24:52,714 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 05:24:52] 2025-11-21 04:24:52,760 [wrapper] ==== pilot stdout END ====
[2025-11-21 05:24:52] 2025-11-21 04:24:52,763 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 05:24:52] 2025-11-21 04:24:52,766 [wrapper] pilotpid: 183029
[2025-11-21 05:24:52] 2025-11-21 04:24:52,769 [wrapper] Pilot exit status: 0
[2025-11-21 05:24:52] 2025-11-21 04:24:52,776 [wrapper] pandaids: 6893857652
[2025-11-21 05:24:52] 2025-11-21 04:24:52,795 [wrapper] cleanup supervisor_pilot  183035 183030
[2025-11-21 05:24:52] 2025-11-21 04:24:52,798 [wrapper] Test setup, not cleaning
[2025-11-21 05:24:52] 2025-11-21 04:24:52,801 [wrapper] apfmon messages muted
[2025-11-21 05:24:52] 2025-11-21 04:24:52,803 [wrapper] ==== wrapper stdout END ====
[2025-11-21 05:24:52] 2025-11-21 04:24:52,806 [wrapper] ==== wrapper stderr END ====
[2025-11-21 05:24:52]  *** Error codes and diagnostics ***
[2025-11-21 05:24:52]     "exeErrorCode": 65,
[2025-11-21 05:24:52]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 05:24:52]     "pilotErrorCode": 1305,
[2025-11-21 05:24:52]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 05:24:52]  *** Listing of results directory ***
[2025-11-21 05:24:52] total 405532
[2025-11-21 05:24:52] -rw-r--r-- 1 boinc boinc    576529 Nov 20 14:01 pilot3.tar.gz
[2025-11-21 05:24:52] -rw-r--r-- 1 boinc boinc      5112 Nov 20 14:10 queuedata.json
[2025-11-21 05:24:52] -rwx------ 1 boinc boinc     36292 Nov 20 14:11 runpilot2-wrapper.sh
[2025-11-21 05:24:52] -rw-r--r-- 1 boinc boinc       100 Nov 21 05:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 05:24:52] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 05:20 run_atlas
[2025-11-21 05:24:52] -rw-r--r-- 1 boinc boinc       105 Nov 21 05:20 job.xml
[2025-11-21 05:24:52] -rw-r--r-- 2 boinc boinc 411066692 Nov 21 05:20 EVNT.47493127._000496.pool.root.1
[2025-11-21 05:24:52] drwxrwx--x 2 boinc boinc      4096 Nov 21 05:20 shared
[2025-11-21 05:24:52] -rw-r--r-- 2 boinc boinc    590104 Nov 21 05:20 input.tar.gz
[2025-11-21 05:24:52] -rw-r--r-- 2 boinc boinc     15847 Nov 21 05:20 start_atlas.sh
[2025-11-21 05:24:52] -rw-r--r-- 1 boinc boinc         0 Nov 21 05:20 boinc_setup_complete
[2025-11-21 05:24:52] -rw-r--r-- 1 boinc boinc      6194 Nov 21 05:20 init_data.xml
[2025-11-21 05:24:52] -rw-r--r-- 1 boinc boinc         0 Nov 21 05:20 boinc_lockfile
[2025-11-21 05:24:52] -rw-r--r-- 1 boinc boinc      2785 Nov 21 05:20 pandaJob.out
[2025-11-21 05:24:52] -rw------- 1 boinc boinc    989817 Nov 21 05:20 agis_schedconf.cvmfs.json
[2025-11-21 05:24:52] -rw------- 1 boinc boinc   1526164 Nov 21 05:20 agis_ddmendpoints.agis.ALL.json
[2025-11-21 05:24:52] drwx------ 5 boinc boinc      4096 Nov 21 05:20 pilot3
[2025-11-21 05:24:52] -rw-r--r-- 1 boinc boinc       523 Nov 21 05:21 boinc_task_state.xml
[2025-11-21 05:24:52] -rw------- 1 boinc boinc       948 Nov 21 05:21 memory_monitor_summary.json
[2025-11-21 05:24:52] -rw------- 1 boinc boinc     55631 Nov 21 05:21 log.47523449._004953.job.log.tgz.1
[2025-11-21 05:24:52] -rw------- 1 boinc boinc        95 Nov 21 05:23 pilot_heartbeat.json
[2025-11-21 05:24:52] -rw------- 1 boinc boinc      8384 Nov 21 05:23 heartbeat.json
[2025-11-21 05:24:52] -rw-r--r-- 1 boinc boinc      8192 Nov 21 05:24 boinc_mmap_file
[2025-11-21 05:24:52] -rw-r--r-- 1 boinc boinc        23 Nov 21 05:24 wrapper_checkpoint.txt
[2025-11-21 05:24:52] -rw------- 1 boinc boinc      4937 Nov 21 05:24 pilotlog.txt
[2025-11-21 05:24:52] -rw------- 1 boinc boinc     91751 Nov 21 05:24 log.47523449._004953.job.log.1
[2025-11-21 05:24:52] -rw------- 1 boinc boinc       186 Nov 21 05:24 output.list
[2025-11-21 05:24:52] -rw-r--r-- 1 boinc boinc       620 Nov 21 05:24 runtime_log
[2025-11-21 05:24:52] -rw------- 1 boinc boinc    163840 Nov 21 05:24 result.tar.gz
[2025-11-21 05:24:52] -rw-r--r-- 1 boinc boinc      8744 Nov 21 05:24 runtime_log.err
[2025-11-21 05:24:52] -rw------- 1 boinc boinc       649 Nov 21 05:24 n3jKDmOcJg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGtHKDmCqkK2n.diag
[2025-11-21 05:24:52] -rw-r--r-- 1 boinc boinc      9306 Nov 21 05:24 stderr.txt
[2025-11-21 05:24:52] No HITS result produced
[2025-11-21 05:24:52]  *** Contents of shared directory: ***
[2025-11-21 05:24:52] total 402196
[2025-11-21 05:24:52] -rw-r--r-- 2 boinc boinc 411066692 Nov 21 05:20 ATLAS.root_0
[2025-11-21 05:24:52] -rw-r--r-- 2 boinc boinc    590104 Nov 21 05:20 input.tar.gz
[2025-11-21 05:24:52] -rw-r--r-- 2 boinc boinc     15847 Nov 21 05:20 start_atlas.sh
[2025-11-21 05:24:52] -rw------- 1 boinc boinc    163840 Nov 21 05:24 result.tar.gz
05:24:54 (179304): run_atlas exited; CPU time 29.858561
05:24:54 (179304): called boinc_finish(0)

</stderr_txt>
]]>

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