Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:27:14 (2757829): wrapper (7.7.26015): starting
23:27:14 (2757829): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 23:27:14] Arguments: --nthreads 8
[2025-11-20 23:27:14] Threads: 8
[2025-11-20 23:27:14] Checking for CVMFS
[2025-11-20 23:27:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 23:27:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 23:27:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 23:27:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 23:27:16] 2.13.3.0 290515 25127 346988 153108 2 190 37753377 40960001 12753 16776704 0 120827804 99.744 79347221 38498 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-20 23:27:16] CVMFS is ok
[2025-11-20 23:27:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 23:27:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 23:27:16] Further information can be found at the LHC@home message board.
[2025-11-20 23:27:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 23:27:16] Checking for apptainer binary...
[2025-11-20 23:27:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 23:27:16] Running /usr/bin/apptainer --version
[2025-11-20 23:27:16] apptainer version 1.4.4-1.el9
[2025-11-20 23:27:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 23:27:17] c6-5-37-4.aglt2.org
[2025-11-20 23:27:17] apptainer works
[2025-11-20 23:27:17] Set ATHENA_PROC_NUMBER=8
[2025-11-20 23:27:17] Set ATHENA_CORE_NUMBER=8
[2025-11-20 23:27:17] Starting ATLAS job with PandaID=6893875873
[2025-11-20 23:27:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 11:58:35]  *** The last 200 lines of the pilot log: ***
[2025-11-21 11:58:35] 2025-11-21 16:58:02,337 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-21 11:58:35] 2025-11-21 16:58:02,352 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3140.2861428571423
[2025-11-21 11:58:35] 2025-11-21 16:58:02,374 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6893875873/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 11:58:35] 2025-11-21 16:58:02,375 | INFO     | extracted standard info from prmon json
[2025-11-21 11:58:35] 2025-11-21 16:58:02,375 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 11:58:35] 2025-11-21 16:58:02,375 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 11:58:35] 2025-11-21 16:58:02,392 | INFO     | fitting pss+swap vs Time
[2025-11-21 11:58:35] 2025-11-21 16:58:02,393 | INFO     | sum of square deviations: 123623259864.42923
[2025-11-21 11:58:35] 2025-11-21 16:58:02,403 | INFO     | sum of deviations: 961404144314.6942
[2025-11-21 11:58:35] 2025-11-21 16:58:02,403 | INFO     | mean x: 1763721826.4538043
[2025-11-21 11:58:35] 2025-11-21 16:58:02,403 | INFO     | mean y: 2876277.7703804346
[2025-11-21 11:58:35] 2025-11-21 16:58:02,404 | INFO     | intersect: -13713389376.690552
[2025-11-21 11:58:35] 2025-11-21 16:58:02,404 | INFO     | chi2: 7.241876101868569
[2025-11-21 11:58:35] 2025-11-21 16:58:02,405 | INFO     | sum of square deviations: 121120989839.84946
[2025-11-21 11:58:35] 2025-11-21 16:58:02,415 | INFO     | sum of deviations: 1226689379967.9583
[2025-11-21 11:58:35] 2025-11-21 16:58:02,416 | INFO     | mean x: 1763721673.9603283
[2025-11-21 11:58:35] 2025-11-21 16:58:02,416 | INFO     | mean y: 2892444.343365253
[2025-11-21 11:58:35] 2025-11-21 16:58:02,416 | INFO     | intersect: -17859731115.18297
[2025-11-21 11:58:35] 2025-11-21 16:58:02,417 | INFO     | chi2: 3.702664925969707
[2025-11-21 11:58:35] 2025-11-21 16:58:02,417 | INFO     | current chi2=3.702664925969707 (change=48.8714681957299 %)
[2025-11-21 11:58:35] 2025-11-21 16:58:02,418 | INFO     | sum of square deviations: 118652631758.56897
[2025-11-21 11:58:35] 2025-11-21 16:58:02,428 | INFO     | sum of deviations: 1295421324323.771
[2025-11-21 11:58:35] 2025-11-21 16:58:02,428 | INFO     | mean x: 1763721521.4641874
[2025-11-21 11:58:35] 2025-11-21 16:58:02,428 | INFO     | mean y: 2896687.279614325
[2025-11-21 11:58:35] 2025-11-21 16:58:02,428 | INFO     | intersect: -19252997052.375854
[2025-11-21 11:58:35] 2025-11-21 16:58:02,429 | INFO     | chi2: 3.338782874366098
[2025-11-21 11:58:35] 2025-11-21 16:58:02,433 | INFO     | current chi2=3.338782874366098 (change=9.827571732225014 %)
[2025-11-21 11:58:35] 2025-11-21 16:58:02,433 | INFO     | right removable region: 725
[2025-11-21 11:58:35] 2025-11-21 16:58:02,434 | INFO     | sum of square deviations: 121120561619.8495
[2025-11-21 11:58:35] 2025-11-21 16:58:02,452 | INFO     | sum of deviations: 711581252159.1238
[2025-11-21 11:58:35] 2025-11-21 16:58:02,452 | INFO     | mean x: 1763721978.9603283
[2025-11-21 11:58:35] 2025-11-21 16:58:02,452 | INFO     | mean y: 2891490.314637483
[2025-11-21 11:58:35] 2025-11-21 16:58:02,453 | INFO     | intersect: -10358945323.059921
[2025-11-21 11:58:35] 2025-11-21 16:58:02,457 | INFO     | chi2: 4.231299535090372
[2025-11-21 11:58:35] 2025-11-21 16:58:02,458 | INFO     | current chi2=4.231299535090372 (change=41.57177676653982 %)
[2025-11-21 11:58:35] 2025-11-21 16:58:02,458 | INFO     | sum of square deviations: 118652130826.26012
[2025-11-21 11:58:35] 2025-11-21 16:58:02,476 | INFO     | sum of deviations: 646623203429.0043
[2025-11-21 11:58:35] 2025-11-21 16:58:02,476 | INFO     | mean x: 1763722131.4586778
[2025-11-21 11:58:35] 2025-11-21 16:58:02,477 | INFO     | mean y: 2895495.150137741
[2025-11-21 11:58:35] 2025-11-21 16:58:02,477 | INFO     | intersect: -9608930661.367853
[2025-11-21 11:58:35] 2025-11-21 16:58:02,482 | INFO     | chi2: 4.011088645315983
[2025-11-21 11:58:35] 2025-11-21 16:58:02,482 | INFO     | current chi2=4.011088645315983 (change=5.204332332139796 %)
[2025-11-21 11:58:35] 2025-11-21 16:58:02,482 | INFO     | left removable region: 20
[2025-11-21 11:58:35] 2025-11-21 16:58:02,483 | INFO     | sum of square deviations: 108650758953.96585
[2025-11-21 11:58:35] 2025-11-21 16:58:02,502 | INFO     | sum of deviations: 940632886972.2677
[2025-11-21 11:58:35] 2025-11-21 16:58:02,502 | INFO     | mean x: 1763722100.961702
[2025-11-21 11:58:35] 2025-11-21 16:58:02,502 | INFO     | mean y: 2919561.009929078
[2025-11-21 11:58:35] 2025-11-21 16:58:02,502 | INFO     | intersect: -15266325013.22545
[2025-11-21 11:58:35] 2025-11-21 16:58:02,507 | INFO     | chi2: 0.03749108410822106
[2025-11-21 11:58:35] 2025-11-21 16:58:02,508 | INFO     | current memory leak: 8.66 B/s (using 705 data points, chi2=0.04)
[2025-11-21 11:58:35] 2025-11-21 16:58:02,508 | INFO     | could have reported an average CPU frequency of 3021 MHz (28 samples)
[2025-11-21 11:58:35] 2025-11-21 16:58:02,509 | INFO     | ..............................
[2025-11-21 11:58:35] 2025-11-21 16:58:02,509 | INFO     | . Timing measurements:
[2025-11-21 11:58:35] 2025-11-21 16:58:02,509 | INFO     | . get job = 0 s
[2025-11-21 11:58:35] 2025-11-21 16:58:02,509 | INFO     | . initial setup = 4 s
[2025-11-21 11:58:35] 2025-11-21 16:58:02,509 | INFO     | . payload setup = 37 s
[2025-11-21 11:58:35] 2025-11-21 16:58:02,509 | INFO     | . stage-in = 0 s
[2025-11-21 11:58:35] 2025-11-21 16:58:02,509 | INFO     | . payload execution = 44866 s
[2025-11-21 11:58:35] 2025-11-21 16:58:02,509 | INFO     | . stage-out = 5 s
[2025-11-21 11:58:35] 2025-11-21 16:58:02,509 | INFO     | . log creation = 1 s
[2025-11-21 11:58:35] 2025-11-21 16:58:02,509 | INFO     | ..............................
[2025-11-21 11:58:35] 2025-11-21 16:58:02,686 | INFO     | 
[2025-11-21 11:58:35] 2025-11-21 16:58:02,686 | INFO     | job summary report
[2025-11-21 11:58:35] 2025-11-21 16:58:02,686 | INFO     | --------------------------------------------------
[2025-11-21 11:58:35] 2025-11-21 16:58:02,687 | INFO     | PanDA job id: 6893875873
[2025-11-21 11:58:35] 2025-11-21 16:58:02,687 | INFO     | task id: 47523449
[2025-11-21 11:58:35] 2025-11-21 16:58:02,687 | INFO     | errors: (none)
[2025-11-21 11:58:35] 2025-11-21 16:58:02,687 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 11:58:35] 2025-11-21 16:58:02,687 | INFO     | pilot state: finished 
[2025-11-21 11:58:35] 2025-11-21 16:58:02,687 | INFO     | transexitcode: 0
[2025-11-21 11:58:35] 2025-11-21 16:58:02,687 | INFO     | exeerrorcode: 0
[2025-11-21 11:58:35] 2025-11-21 16:58:02,687 | INFO     | exeerrordiag: 
[2025-11-21 11:58:35] 2025-11-21 16:58:02,687 | INFO     | exitcode: 0
[2025-11-21 11:58:35] 2025-11-21 16:58:02,687 | INFO     | exitmsg: OK
[2025-11-21 11:58:35] 2025-11-21 16:58:02,687 | INFO     | cpuconsumptiontime: 230126 s
[2025-11-21 11:58:35] 2025-11-21 16:58:02,687 | INFO     | nevents: 1000
[2025-11-21 11:58:35] 2025-11-21 16:58:02,687 | INFO     | neventsw: 0
[2025-11-21 11:58:35] 2025-11-21 16:58:02,687 | INFO     | pid: 2775576
[2025-11-21 11:58:35] 2025-11-21 16:58:02,687 | INFO     | pgrp: 2775576
[2025-11-21 11:58:35] 2025-11-21 16:58:02,687 | INFO     | corecount: 8
[2025-11-21 11:58:35] 2025-11-21 16:58:02,687 | INFO     | event service: False
[2025-11-21 11:58:35] 2025-11-21 16:58:02,688 | INFO     | sizes: {0: 2298529, 1: 2298613, 2: 2298812, 13: 2298812, 23: 2298868, 25: 2299158, 34: 2299314, 44907: 2345401, 44908: 2345400, 44914: 2354506, 44935: 2354724}
[2025-11-21 11:58:35] 2025-11-21 16:58:02,688 | INFO     | --------------------------------------------------
[2025-11-21 11:58:35] 2025-11-21 16:58:02,688 | INFO     | 
[2025-11-21 11:58:35] 2025-11-21 16:58:02,688 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-21 11:58:35] 2025-11-21 16:58:02,766 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 11:58:35] 2025-11-21 16:58:02,766 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 11:58:35] 2025-11-21 16:58:02,766 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 11:58:35] 2025-11-21 16:58:02,766 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 11:58:35] 2025-11-21 16:58:02,766 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 11:58:35] 2025-11-21 16:58:02,766 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 11:58:35] 2025-11-21 16:58:02,766 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 11:58:35] 2025-11-21 16:58:02,766 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 11:58:35] 2025-11-21 16:58:02,766 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 11:58:35] 2025-11-21 16:58:02,767 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 11:58:35] 2025-11-21 16:58:02,767 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 11:58:35] 2025-11-21 16:58:02,767 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 11:58:35] 2025-11-21 16:58:02,767 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 11:58:35] 2025-11-21 16:58:02,767 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 11:58:35] 2025-11-21 16:58:02,767 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 11:58:35] 2025-11-21 16:58:02,767 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 11:58:35] 2025-11-21 16:58:02,767 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 11:58:35] 2025-11-21 16:58:02,767 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 11:58:35] 2025-11-21 16:58:02,767 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 11:58:35] 2025-11-21 16:58:02,767 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 11:58:35] 2025-11-21 16:58:02,767 | INFO     | job 6893875873 has completed (purged errors)
[2025-11-21 11:58:35] 2025-11-21 16:58:02,768 | INFO     | overall cleanup function is called
[2025-11-21 11:58:35] 2025-11-21 16:58:03,795 | INFO     | --- collectZombieJob: --- 10, [2775576]
[2025-11-21 11:58:35] 2025-11-21 16:58:03,795 | INFO     | zombie collector waiting for pid 2775576
[2025-11-21 11:58:35] 2025-11-21 16:58:03,795 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 11:58:35] 2025-11-21 16:58:03,796 | INFO     | collected zombie processes
[2025-11-21 11:58:35] 2025-11-21 16:58:03,796 | INFO     | will attempt to kill all subprocesses of pid=2775576
[2025-11-21 11:58:35] 2025-11-21 16:58:04,284 | INFO     | process IDs to be killed: [2775576] (in reverse order)
[2025-11-21 11:58:35] 2025-11-21 16:58:04,492 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 11:58:35] 2025-11-21 16:58:04,496 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 11:58:35] 2025-11-21 16:58:04,559 | INFO     | did not find any defunct processes belonging to 2775576
[2025-11-21 11:58:35] 2025-11-21 16:58:04,586 | INFO     | did not find any defunct processes belonging to 2775576
[2025-11-21 11:58:35] 2025-11-21 16:58:04,592 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 11:58:35] 2025-11-21 16:58:04,593 | INFO     | ready for new job
[2025-11-21 11:58:35] 2025-11-21 16:58:04,593 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 11:58:35] 2025-11-21 16:58:04,603 | INFO     | ***************************************
[2025-11-21 11:58:35] 2025-11-21 16:58:04,603 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 11:58:35] 2025-11-21 16:58:04,603 | INFO     | ***************************************
[2025-11-21 11:58:35] 2025-11-21 16:58:04,603 | INFO     | 
[2025-11-21 11:58:35] 2025-11-21 16:58:04,611 | INFO     | architecture information:
[2025-11-21 11:58:35] 2025-11-21 16:58:04,612 | INFO     | executing command: cat /etc/os-release
[2025-11-21 11:58:35] 2025-11-21 16:58:04,666 | INFO     | cat /etc/os-release:
[2025-11-21 11:58:35] NAME="CentOS Linux"
[2025-11-21 11:58:35] VERSION="7 (Core)"
[2025-11-21 11:58:35] ID="centos"
[2025-11-21 11:58:35] ID_LIKE="rhel fedora"
[2025-11-21 11:58:35] VERSION_ID="7"
[2025-11-21 11:58:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 11:58:35] ANSI_COLOR="0;31"
[2025-11-21 11:58:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 11:58:35] HOME_URL="https://www.centos.org/"
[2025-11-21 11:58:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 11:58:35] 
[2025-11-21 11:58:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 11:58:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 11:58:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 11:58:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 11:58:35] 
[2025-11-21 11:58:35] 2025-11-21 16:58:04,666 | INFO     | ***************************************
[2025-11-21 11:58:35] 2025-11-21 16:58:05,172 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-21 11:58:35] 2025-11-21 16:58:05,236 | INFO     | sufficient remaining disk space (66986180608 B)
[2025-11-21 11:58:35] 2025-11-21 16:58:05,236 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 11:58:35] 2025-11-21 16:58:05,236 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 11:58:35] 2025-11-21 16:58:05,236 | INFO     | update_server=False
[2025-11-21 11:58:35] 2025-11-21 16:58:05,237 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 11:58:35] 2025-11-21 16:58:05,237 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 11:58:35] 2025-11-21 16:58:05,268 | INFO     | all payload control threads have been joined
[2025-11-21 11:58:35] 2025-11-21 16:58:05,578 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-21 11:58:35] 2025-11-21 16:58:05,578 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-21 11:58:35] 2025-11-21 16:58:05,578 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 11:58:35] 2025-11-21 16:58:05,579 | INFO     | will abort loop
[2025-11-21 11:58:35] 2025-11-21 16:58:05,760 | INFO     | all data control threads have been joined
[2025-11-21 11:58:35] 2025-11-21 16:58:05,877 | INFO     | all job control threads have been joined
[2025-11-21 11:58:35] 2025-11-21 16:58:06,242 | INFO     | [job] retrieve thread has finished
[2025-11-21 11:58:35] 2025-11-21 16:58:06,269 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 11:58:35] 2025-11-21 16:58:06,276 | INFO     | [payload] control thread has finished
[2025-11-21 11:58:35] 2025-11-21 16:58:06,287 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 11:58:35] 2025-11-21 16:58:06,505 | INFO     | [payload] failed_post thread has finished
[2025-11-21 11:58:35] 2025-11-21 16:58:06,586 | INFO     | [job] job monitor thread has finished
[2025-11-21 11:58:35] 2025-11-21 16:58:06,726 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 11:58:35] 2025-11-21 16:58:06,767 | INFO     | [data] control thread has finished
[2025-11-21 11:58:35] 2025-11-21 16:58:06,882 | INFO     | [job] control thread has finished
[2025-11-21 11:58:35] 2025-11-21 16:58:07,151 | INFO     | [job] validate thread has finished
[2025-11-21 11:58:35] 2025-11-21 16:58:07,159 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 11:58:35] 2025-11-21 16:58:07,240 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 11:58:35] 2025-11-21 16:58:07,241 | INFO     | [data] copytool_in thread has finished
[2025-11-21 11:58:35] 2025-11-21 16:58:07,243 | INFO     | [data] copytool_out thread has finished
[2025-11-21 11:58:35] 2025-11-21 16:58:07,348 | INFO     | [payload] validate_post thread has finished
[2025-11-21 11:58:35] 2025-11-21 16:58:07,445 [wrapper] supervise_pilot (15 min periods counter: 51)
[2025-11-21 11:58:35] 2025-11-21 16:58:07,701 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 11:58:35] 2025-11-21 16:58:08,707 | INFO     | [job] queue monitor thread has finished
[2025-11-21 11:58:35] 2025-11-21 16:58:10,278 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 11:58:35] 2025-11-21 16:58:25,807 | INFO     | [monitor] cgroup control has ended
[2025-11-21 11:58:35] 2025-11-21 16:58:26,405 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140166188312384)>', '<ExcThread(monitor, started 140165670475520)>']
[2025-11-21 11:58:35] 2025-11-21 16:58:31,431 | INFO     | all workflow threads have been joined
[2025-11-21 11:58:35] 2025-11-21 16:58:31,431 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 11:58:35] 2025-11-21 16:58:31,432 | INFO     | traces error code: 0
[2025-11-21 11:58:35] 2025-11-21 16:58:31,432 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 11:58:35] 2025-11-21 16:58:35,325 | INFO     | PID=2762445 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 11:58:35] 2025-11-21 16:58:35,325 | INFO     | .. there are 26 such processes running
[2025-11-21 11:58:35] 2025-11-21 16:58:35,325 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 11:58:35] 2025-11-21 16:58:35,326 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 11:58:35] 2025-11-21 16:58:35,326 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 11:58:35] 2025-11-21 16:58:35,326 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 11:58:35] 2025-11-21 16:58:35,326 | INFO     | [monitor] control thread has ended
[2025-11-21 11:58:35] 2025-11-21 16:58:35,495 [wrapper] ==== pilot stdout END ====
[2025-11-21 11:58:35] 2025-11-21 16:58:35,498 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 11:58:35] 2025-11-21 16:58:35,500 [wrapper] pilotpid: 2762445
[2025-11-21 11:58:35] 2025-11-21 16:58:35,504 [wrapper] Pilot exit status: 0
[2025-11-21 11:58:35] 2025-11-21 16:58:35,537 [wrapper] pandaids: 6893875873
[2025-11-21 11:58:35] 2025-11-21 16:58:35,632 [wrapper] cleanup supervisor_pilot  731788 2762446
[2025-11-21 11:58:35] 2025-11-21 16:58:35,639 [wrapper] Test setup, not cleaning
[2025-11-21 11:58:35] 2025-11-21 16:58:35,647 [wrapper] apfmon messages muted
[2025-11-21 11:58:35] 2025-11-21 16:58:35,650 [wrapper] ==== wrapper stdout END ====
[2025-11-21 11:58:35] 2025-11-21 16:58:35,652 [wrapper] ==== wrapper stderr END ====
[2025-11-21 11:58:35]  *** Error codes and diagnostics ***
[2025-11-21 11:58:35]     "exeErrorCode": 0,
[2025-11-21 11:58:35]     "exeErrorDiag": "",
[2025-11-21 11:58:35]     "pilotErrorCode": 0,
[2025-11-21 11:58:35]     "pilotErrorDiag": "",
[2025-11-21 11:58:35]  *** Listing of results directory ***
[2025-11-21 11:58:35] total 1328460
[2025-11-21 11:58:35] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 11:47 queuedata.json
[2025-11-21 11:58:35] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 11:47 pilot3.tar.gz
[2025-11-21 11:58:35] -rwx------. 1 boincer umatlas     36292 Nov 20 11:48 runpilot2-wrapper.sh
[2025-11-21 11:58:35] -rw-r--r--. 1 boincer umatlas       100 Nov 20 23:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 11:58:35] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 20 23:27 run_atlas
[2025-11-21 11:58:35] -rw-r--r--. 1 boincer umatlas       105 Nov 20 23:27 job.xml
[2025-11-21 11:58:35] -rw-r--r--. 2 boincer umatlas 410209500 Nov 20 23:27 EVNT.47493127._000746.pool.root.1
[2025-11-21 11:58:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 23:27 start_atlas.sh
[2025-11-21 11:58:35] drwxrwx--x. 2 boincer umatlas      4096 Nov 20 23:27 shared
[2025-11-21 11:58:35] -rw-r--r--. 2 boincer umatlas    590102 Nov 20 23:27 input.tar.gz
[2025-11-21 11:58:35] -rw-r--r--. 1 boincer umatlas         0 Nov 20 23:27 boinc_lockfile
[2025-11-21 11:58:35] -rw-r--r--. 1 boincer umatlas      2785 Nov 20 23:27 pandaJob.out
[2025-11-21 11:58:35] -rw-------. 1 boincer umatlas        57 Nov 20 23:27 setup.sh.local
[2025-11-21 11:58:35] -rw-------. 1 boincer umatlas    989817 Nov 20 23:28 agis_schedconf.cvmfs.json
[2025-11-21 11:58:35] drwx------. 5 boincer umatlas      4096 Nov 20 23:28 pilot3
[2025-11-21 11:58:35] -rw-r--r--. 1 boincer umatlas       533 Nov 21 11:46 boinc_task_state.xml
[2025-11-21 11:58:35] -rw-r--r--. 1 boincer umatlas      6842 Nov 21 11:55 init_data.xml
[2025-11-21 11:58:35] -rw-------. 1 boincer umatlas 930029726 Nov 21 11:56 HITS.47523449._007455.pool.root.1
[2025-11-21 11:58:35] -rw-------. 1 boincer umatlas      1051 Nov 21 11:57 memory_monitor_summary.json
[2025-11-21 11:58:35] -rw-------. 1 boincer umatlas   1526164 Nov 21 11:57 agis_ddmendpoints.agis.ALL.json
[2025-11-21 11:58:35] -rw-------. 1 boincer umatlas   1975678 Nov 21 11:57 log.47523449._007455.job.log.tgz.1
[2025-11-21 11:58:35] -rw-------. 1 boincer umatlas        95 Nov 21 11:57 pilot_heartbeat.json
[2025-11-21 11:58:35] -rw-------. 1 boincer umatlas      8623 Nov 21 11:58 heartbeat.json
[2025-11-21 11:58:35] -rw-r--r--. 1 boincer umatlas        29 Nov 21 11:58 wrapper_checkpoint.txt
[2025-11-21 11:58:35] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 11:58 boinc_mmap_file
[2025-11-21 11:58:35] -rw-------. 1 boincer umatlas       823 Nov 21 11:58 pilotlog.txt
[2025-11-21 11:58:35] -rw-------. 1 boincer umatlas   6115501 Nov 21 11:58 log.47523449._007455.job.log.1
[2025-11-21 11:58:35] -rw-------. 1 boincer umatlas       353 Nov 21 11:58 output.list
[2025-11-21 11:58:35] -rw-r--r--. 1 boincer umatlas       620 Nov 21 11:58 runtime_log
[2025-11-21 11:58:35] -rw-------. 1 boincer umatlas   8110080 Nov 21 11:58 result.tar.gz
[2025-11-21 11:58:35] -rw-------. 1 boincer umatlas       661 Nov 21 11:58 vSKMDmr0Mg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmIKIKDm0dR7pn.diag
[2025-11-21 11:58:35] -rw-r--r--. 1 boincer umatlas      9348 Nov 21 11:58 runtime_log.err
[2025-11-21 11:58:35] -rw-r--r--. 1 boincer umatlas     21330 Nov 21 11:58 stderr.txt
[2025-11-21 11:58:35] HITS file was successfully produced:
[2025-11-21 11:58:35] -rw-------. 1 boincer umatlas 930029726 Nov 21 11:56 shared/HITS.pool.root.1
[2025-11-21 11:58:35]  *** Contents of shared directory: ***
[2025-11-21 11:58:35] total 1317352
[2025-11-21 11:58:35] -rw-r--r--. 2 boincer umatlas 410209500 Nov 20 23:27 ATLAS.root_0
[2025-11-21 11:58:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 23:27 start_atlas.sh
[2025-11-21 11:58:35] -rw-r--r--. 2 boincer umatlas    590102 Nov 20 23:27 input.tar.gz
[2025-11-21 11:58:35] -rw-------. 1 boincer umatlas 930029726 Nov 21 11:56 HITS.pool.root.1
[2025-11-21 11:58:35] -rw-------. 1 boincer umatlas   8110080 Nov 21 11:58 result.tar.gz
11:58:37 (2757829): run_atlas exited; CPU time 230907.548920
11:58:37 (2757829): called boinc_finish(0)

</stderr_txt>
]]>

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