Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:31:01 (27649): wrapper (7.7.26015): starting
03:31:01 (27649): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 03:31:01] Arguments: --nthreads 8
[2025-11-24 03:31:01] Threads: 8
[2025-11-24 03:31:01] Checking for CVMFS
[2025-11-24 03:31:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 03:31:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 03:31:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 03:31:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 03:31:03] 2.11.2.0 28641 281746 157056 153229 0 117 21319344 25165824 4308 130560 218 124987711 99.879 71601464 2747 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 03:31:03] CVMFS is ok
[2025-11-24 03:31:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 03:31:03] Checking for apptainer binary...
[2025-11-24 03:31:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 03:31:03] Running /usr/bin/apptainer --version
[2025-11-24 03:31:03] apptainer version 1.3.2-1.el7
[2025-11-24 03:31:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 03:31:26] cg-vwn402.simple-grid.lan
[2025-11-24 03:31:26] apptainer works
[2025-11-24 03:31:26] Set ATHENA_PROC_NUMBER=8
[2025-11-24 03:31:26] Set ATHENA_CORE_NUMBER=8
[2025-11-24 03:31:26] Starting ATLAS job with PandaID=6893857672
[2025-11-24 03:31:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 01:17:44]  *** The last 200 lines of the pilot log: ***
[2025-11-25 01:17:44] 2025-11-25 00:16:27,525 | INFO     | monitor loop #5241: job 0:6893857672 is in state 'finished'
[2025-11-25 01:17:44] 2025-11-25 00:16:27,525 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:17:44] 2025-11-25 00:16:29,251 | INFO     | time since job start (78070s) is within the limit (172800.0s)
[2025-11-25 01:17:44] 2025-11-25 00:16:30,036 | INFO     | monitor loop #5242: job 0:6893857672 is in state 'finished'
[2025-11-25 01:17:44] 2025-11-25 00:16:30,036 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:17:44] 2025-11-25 00:16:31,264 | INFO     | time since job start (78072s) is within the limit (172800.0s)
[2025-11-25 01:17:44] 2025-11-25 00:16:32,546 | INFO     | monitor loop #5243: job 0:6893857672 is in state 'finished'
[2025-11-25 01:17:44] 2025-11-25 00:16:32,546 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:17:44] 2025-11-25 00:16:33,278 | INFO     | time since job start (78074s) is within the limit (172800.0s)
[2025-11-25 01:17:44] 2025-11-25 00:16:35,066 | INFO     | monitor loop #5244: job 0:6893857672 is in state 'finished'
[2025-11-25 01:17:44] 2025-11-25 00:16:35,066 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:17:44] 2025-11-25 00:16:35,276 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 01:17:44] 2025-11-25 00:16:35,277 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 01:17:44] 2025-11-25 00:16:35,279 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6893857672/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 01:17:44] 2025-11-25 00:16:35,279 | INFO     | extracted standard info from prmon json
[2025-11-25 01:17:44] 2025-11-25 00:16:35,280 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 01:17:44] 2025-11-25 00:16:35,280 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 01:17:44] 2025-11-25 00:16:35,305 | INFO     | fitting pss+swap vs Time
[2025-11-25 01:17:44] 2025-11-25 00:16:35,308 | INFO     | sum of square deviations: 635170469816.0745
[2025-11-25 01:17:44] 2025-11-25 00:16:35,328 | INFO     | time since job start (78076s) is within the limit (172800.0s)
[2025-11-25 01:17:44] 2025-11-25 00:16:35,356 | INFO     | sum of deviations: 2871228907104.5786
[2025-11-25 01:17:44] 2025-11-25 00:16:35,356 | INFO     | mean x: 1763990923.5653543
[2025-11-25 01:17:44] 2025-11-25 00:16:35,356 | INFO     | mean y: 2827282.44488189
[2025-11-25 01:17:44] 2025-11-25 00:16:35,356 | INFO     | intersect: -7971129272.993792
[2025-11-25 01:17:44] 2025-11-25 00:16:35,358 | INFO     | chi2: 29.9968160310584
[2025-11-25 01:17:44] 2025-11-25 00:16:35,360 | INFO     | sum of square deviations: 627698379577.8779
[2025-11-25 01:17:44] 2025-11-25 00:16:35,409 | INFO     | sum of deviations: 3280164887577.23
[2025-11-25 01:17:44] 2025-11-25 00:16:35,409 | INFO     | mean x: 1763990771.0695653
[2025-11-25 01:17:44] 2025-11-25 00:16:35,409 | INFO     | mean y: 2835627.0086956522
[2025-11-25 01:17:44] 2025-11-25 00:16:35,409 | INFO     | intersect: -9215255063.561243
[2025-11-25 01:17:44] 2025-11-25 00:16:35,411 | INFO     | chi2: 26.82741486893761
[2025-11-25 01:17:44] 2025-11-25 00:16:35,411 | INFO     | current chi2=26.82741486893761 (change=10.565791912179034 %)
[2025-11-25 01:17:44] 2025-11-25 00:16:35,411 | INFO     | right removable region: 1264
[2025-11-25 01:17:44] 2025-11-25 00:16:35,413 | INFO     | sum of square deviations: 627697554247.8777
[2025-11-25 01:17:44] 2025-11-25 00:16:35,460 | INFO     | sum of deviations: 2333629945526.947
[2025-11-25 01:17:44] 2025-11-25 00:16:35,461 | INFO     | mean x: 1763991076.0695653
[2025-11-25 01:17:44] 2025-11-25 00:16:35,461 | INFO     | mean y: 2838253.0347826085
[2025-11-25 01:17:44] 2025-11-25 00:16:35,461 | INFO     | intersect: -6555260262.564394
[2025-11-25 01:17:44] 2025-11-25 00:16:35,463 | INFO     | chi2: 25.11150732410807
[2025-11-25 01:17:44] 2025-11-25 00:16:35,463 | INFO     | current chi2=25.11150732410807 (change=16.286090836747906 %)
[2025-11-25 01:17:44] 2025-11-25 00:16:35,463 | INFO     | left removable region: 10
[2025-11-25 01:17:44] 2025-11-25 00:16:35,465 | INFO     | sum of square deviations: 611464913805.684
[2025-11-25 01:17:44] 2025-11-25 00:16:35,517 | INFO     | sum of deviations: 2373741555960.3584
[2025-11-25 01:17:44] 2025-11-25 00:16:35,518 | INFO     | mean x: 1763991045.5789473
[2025-11-25 01:17:44] 2025-11-25 00:16:35,518 | INFO     | mean y: 2858110.2185007976
[2025-11-25 01:17:44] 2025-11-25 00:16:35,518 | INFO     | intersect: -6845055408.108684
[2025-11-25 01:17:44] 2025-11-25 00:16:35,519 | INFO     | chi2: 17.669114660444635
[2025-11-25 01:17:44] 2025-11-25 00:16:35,520 | INFO     | current memory leak: 3.88 B/s (using 1254 data points, chi2=17.67)
[2025-11-25 01:17:44] 2025-11-25 00:16:35,521 | INFO     | could have reported an average CPU frequency of 1999 MHz (43 samples)
[2025-11-25 01:17:44] 2025-11-25 00:16:35,522 | INFO     | ..............................
[2025-11-25 01:17:44] 2025-11-25 00:16:35,522 | INFO     | . Timing measurements:
[2025-11-25 01:17:44] 2025-11-25 00:16:35,522 | INFO     | . get job = 0 s
[2025-11-25 01:17:44] 2025-11-25 00:16:35,522 | INFO     | . initial setup = 9 s
[2025-11-25 01:17:44] 2025-11-25 00:16:35,522 | INFO     | . payload setup = 148 s
[2025-11-25 01:17:44] 2025-11-25 00:16:35,522 | INFO     | . stage-in = 0 s
[2025-11-25 01:17:44] 2025-11-25 00:16:35,522 | INFO     | . payload execution = 77622 s
[2025-11-25 01:17:44] 2025-11-25 00:16:35,522 | INFO     | . stage-out = 5 s
[2025-11-25 01:17:44] 2025-11-25 00:16:35,522 | INFO     | . log creation = 2 s
[2025-11-25 01:17:44] 2025-11-25 00:16:35,522 | INFO     | ..............................
[2025-11-25 01:17:44] 2025-11-25 00:16:35,657 | INFO     | 
[2025-11-25 01:17:44] 2025-11-25 00:16:35,657 | INFO     | job summary report
[2025-11-25 01:17:44] 2025-11-25 00:16:35,658 | INFO     | --------------------------------------------------
[2025-11-25 01:17:44] 2025-11-25 00:16:35,658 | INFO     | PanDA job id: 6893857672
[2025-11-25 01:17:44] 2025-11-25 00:16:35,658 | INFO     | task id: 47523449
[2025-11-25 01:17:44] 2025-11-25 00:16:35,658 | INFO     | errors: (none)
[2025-11-25 01:17:44] 2025-11-25 00:16:35,658 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 01:17:44] 2025-11-25 00:16:35,658 | INFO     | pilot state: finished 
[2025-11-25 01:17:44] 2025-11-25 00:16:35,658 | INFO     | transexitcode: 0
[2025-11-25 01:17:44] 2025-11-25 00:16:35,658 | INFO     | exeerrorcode: 0
[2025-11-25 01:17:44] 2025-11-25 00:16:35,658 | INFO     | exeerrordiag: 
[2025-11-25 01:17:44] 2025-11-25 00:16:35,658 | INFO     | exitcode: 0
[2025-11-25 01:17:44] 2025-11-25 00:16:35,659 | INFO     | exitmsg: OK
[2025-11-25 01:17:44] 2025-11-25 00:16:35,659 | INFO     | cpuconsumptiontime: 335741 s
[2025-11-25 01:17:44] 2025-11-25 00:16:35,659 | INFO     | nevents: 1000
[2025-11-25 01:17:44] 2025-11-25 00:16:35,659 | INFO     | neventsw: 0
[2025-11-25 01:17:44] 2025-11-25 00:16:35,659 | INFO     | pid: 5738
[2025-11-25 01:17:44] 2025-11-25 00:16:35,659 | INFO     | pgrp: 5738
[2025-11-25 01:17:44] 2025-11-25 00:16:35,659 | INFO     | corecount: 8
[2025-11-25 01:17:44] 2025-11-25 00:16:35,659 | INFO     | event service: False
[2025-11-25 01:17:44] 2025-11-25 00:16:35,659 | INFO     | sizes: {0: 2298579, 1: 2298663, 2: 2298862, 13: 2298862, 23: 2298918, 34: 2298946, 45: 2299102, 55: 2299130, 66: 2299158, 77: 2299186, 88: 2299242, 94: 2299812, 98
[2025-11-25 01:17:44] 2025-11-25 00:16:35,659 | INFO     | --------------------------------------------------
[2025-11-25 01:17:44] 2025-11-25 00:16:35,660 | INFO     | 
[2025-11-25 01:17:44] 2025-11-25 00:16:35,660 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-25 01:17:44] 2025-11-25 00:16:36,488 | INFO     | PID=31515 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 01:17:44] 2025-11-25 00:16:36,489 | INFO     | .. there are 2 such processes running
[2025-11-25 01:17:44] 2025-11-25 00:16:36,518 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 01:17:44] 2025-11-25 00:16:36,519 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 01:17:44] 2025-11-25 00:16:36,519 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 01:17:44] 2025-11-25 00:16:36,519 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 01:17:44] 2025-11-25 00:16:36,519 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 01:17:44] 2025-11-25 00:16:36,519 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 01:17:44] 2025-11-25 00:16:36,519 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 01:17:44] 2025-11-25 00:16:36,519 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 01:17:44] 2025-11-25 00:16:36,519 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 01:17:44] 2025-11-25 00:16:36,519 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 01:17:44] 2025-11-25 00:16:36,519 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 01:17:44] 2025-11-25 00:16:36,519 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 01:17:44] 2025-11-25 00:16:36,520 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 01:17:44] 2025-11-25 00:16:36,520 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 01:17:44] 2025-11-25 00:16:36,520 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 01:17:44] 2025-11-25 00:16:36,520 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 01:17:44] 2025-11-25 00:16:36,520 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 01:17:44] 2025-11-25 00:16:36,520 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 01:17:44] 2025-11-25 00:16:36,520 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 01:17:44] 2025-11-25 00:16:36,520 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 01:17:44] 2025-11-25 00:16:36,520 | INFO     | job 6893857672 has completed (purged errors)
[2025-11-25 01:17:44] 2025-11-25 00:16:36,521 | INFO     | overall cleanup function is called
[2025-11-25 01:17:44] 2025-11-25 00:16:37,538 | INFO     | --- collectZombieJob: --- 10, [5738]
[2025-11-25 01:17:44] 2025-11-25 00:16:37,538 | INFO     | zombie collector waiting for pid 5738
[2025-11-25 01:17:44] 2025-11-25 00:16:37,538 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 01:17:44] 2025-11-25 00:16:37,538 | INFO     | collected zombie processes
[2025-11-25 01:17:44] 2025-11-25 00:16:37,539 | INFO     | will attempt to kill all subprocesses of pid=5738
[2025-11-25 01:17:44] 2025-11-25 00:16:37,608 | INFO     | process IDs to be killed: [5738] (in reverse order)
[2025-11-25 01:17:44] 2025-11-25 00:16:38,614 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 01:17:44] 2025-11-25 00:16:38,615 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 01:17:44] 2025-11-25 00:16:38,617 | INFO     | did not find any defunct processes belonging to 5738
[2025-11-25 01:17:44] 2025-11-25 00:16:38,619 | INFO     | did not find any defunct processes belonging to 5738
[2025-11-25 01:17:44] 2025-11-25 00:16:38,649 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 01:17:44] 2025-11-25 00:16:38,650 | INFO     | ready for new job
[2025-11-25 01:17:44] 2025-11-25 00:16:38,650 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 01:17:44] 2025-11-25 00:16:38,655 | INFO     | ***************************************
[2025-11-25 01:17:44] 2025-11-25 00:16:38,655 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 01:17:44] 2025-11-25 00:16:38,655 | INFO     | ***************************************
[2025-11-25 01:17:44] 2025-11-25 00:16:38,655 | INFO     | 
[2025-11-25 01:17:44] 2025-11-25 00:16:38,656 | INFO     | pilot is running in a VM
[2025-11-25 01:17:44] 2025-11-25 00:16:38,656 | INFO     | architecture information:
[2025-11-25 01:17:44] 2025-11-25 00:16:38,659 | INFO     | executing command: cat /etc/os-release
[2025-11-25 01:17:44] 2025-11-25 00:16:38,951 | INFO     | cat /etc/os-release:
[2025-11-25 01:17:44] NAME="CentOS Linux"
[2025-11-25 01:17:44] VERSION="7 (Core)"
[2025-11-25 01:17:44] ID="centos"
[2025-11-25 01:17:44] ID_LIKE="rhel fedora"
[2025-11-25 01:17:44] VERSION_ID="7"
[2025-11-25 01:17:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 01:17:44] ANSI_COLOR="0;31"
[2025-11-25 01:17:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 01:17:44] HOME_URL="https://www.centos.org/"
[2025-11-25 01:17:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 01:17:44] 
[2025-11-25 01:17:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 01:17:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 01:17:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 01:17:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 01:17:44] 
[2025-11-25 01:17:44] 2025-11-25 00:16:38,952 | INFO     | ***************************************
[2025-11-25 01:17:44] 2025-11-25 00:16:39,455 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-25 01:17:44] 2025-11-25 00:16:39,715 | INFO     | sufficient remaining disk space (492872663040 B)
[2025-11-25 01:17:44] 2025-11-25 00:16:39,716 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 01:17:44] 2025-11-25 00:16:39,716 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 01:17:44] 2025-11-25 00:16:39,716 | INFO     | update_server=False
[2025-11-25 01:17:44] 2025-11-25 00:16:39,716 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 01:17:44] 2025-11-25 00:16:39,765 | INFO     | all payload control threads have been joined
[2025-11-25 01:17:44] 2025-11-25 00:16:40,079 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 01:17:44] 2025-11-25 00:16:40,079 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 01:17:44] 2025-11-25 00:16:40,079 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:17:44] 2025-11-25 00:16:40,080 | INFO     | will abort loop
[2025-11-25 01:17:44] 2025-11-25 00:16:40,125 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 01:17:44] 2025-11-25 00:16:40,555 | INFO     | all job control threads have been joined
[2025-11-25 01:17:44] 2025-11-25 00:16:40,677 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:17:44] 2025-11-25 00:16:40,722 | INFO     | [job] retrieve thread has finished
[2025-11-25 01:17:44] 2025-11-25 00:16:40,771 | INFO     | [payload] control thread has finished
[2025-11-25 01:17:44] 2025-11-25 00:16:40,777 | INFO     | all data control threads have been joined
[2025-11-25 01:17:44] 2025-11-25 00:16:40,827 | INFO     | [payload] failed_post thread has finished
[2025-11-25 01:17:44] 2025-11-25 00:16:41,083 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 01:17:44] 2025-11-25 00:16:41,085 | INFO     | [job] job monitor thread has finished
[2025-11-25 01:17:44] 2025-11-25 00:16:41,167 | INFO     | [job] validate thread has finished
[2025-11-25 01:17:44] 2025-11-25 00:16:41,193 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 01:17:44] 2025-11-25 00:16:41,561 | INFO     | [job] control thread has finished
[2025-11-25 01:17:44] 2025-11-25 00:16:41,595 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 01:17:44] 2025-11-25 00:16:41,683 | INFO     | [job] queue monitor thread has finished
[2025-11-25 01:17:44] 2025-11-25 00:16:41,783 | INFO     | [data] control thread has finished
[2025-11-25 01:17:44] 2025-11-25 00:16:41,844 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 01:17:44] 2025-11-25 00:16:41,851 | INFO     | [data] copytool_in thread has finished
[2025-11-25 01:17:44] 2025-11-25 00:16:41,973 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 01:17:44] 2025-11-25 00:16:42,023 | INFO     | [payload] validate_post thread has finished
[2025-11-25 01:17:44] 2025-11-25 00:16:42,132 | INFO     | [data] copytool_out thread has finished
[2025-11-25 01:17:44] 2025-11-25 00:16:45,202 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 01:17:44] 2025-11-25 00:17:08,618 | INFO     | PID=31515 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 01:17:44] 2025-11-25 00:17:08,619 | INFO     | .. there are 2 such processes running
[2025-11-25 01:17:44] 2025-11-25 00:17:08,619 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 01:17:44] 2025-11-25 00:17:08,619 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 01:17:44] 2025-11-25 00:17:08,619 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 01:17:44] 2025-11-25 00:17:34,555 | INFO     | [monitor] cgroup control has ended
[2025-11-25 01:17:44] 2025-11-25 00:17:34,988 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140614135924544)>', '<ExcThread(monitor, started 140613697644288)>']
[2025-11-25 01:17:44] 2025-11-25 00:17:35,781 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 01:17:44] 2025-11-25 00:17:35,781 | INFO     | [monitor] control thread has ended
[2025-11-25 01:17:44] 2025-11-25 00:17:40,014 | INFO     | all workflow threads have been joined
[2025-11-25 01:17:44] 2025-11-25 00:17:40,014 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 01:17:44] 2025-11-25 00:17:40,015 | INFO     | traces error code: 0
[2025-11-25 01:17:44] 2025-11-25 00:17:40,015 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 01:17:44] 2025-11-25 00:17:40,545 [wrapper] ==== pilot stdout END ====
[2025-11-25 01:17:44] 2025-11-25 00:17:40,613 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 01:17:44] 2025-11-25 00:17:40,714 [wrapper] pilotpid: 31515
[2025-11-25 01:17:44] 2025-11-25 00:17:40,839 [wrapper] Pilot exit status: 0
[2025-11-25 01:17:44] 2025-11-25 00:17:41,286 [wrapper] pandaids: 6893857672
[2025-11-25 01:17:44] 2025-11-25 00:17:42,454 [wrapper] cleanup supervisor_pilot 19425 31516
[2025-11-25 01:17:44] 2025-11-25 00:17:42,560 [wrapper] Test setup, not cleaning
[2025-11-25 01:17:44] 2025-11-25 00:17:42,678 [wrapper] apfmon messages muted
[2025-11-25 01:17:44] 2025-11-25 00:17:42,801 [wrapper] ==== wrapper stdout END ====
[2025-11-25 01:17:44] 2025-11-25 00:17:42,905 [wrapper] ==== wrapper stderr END ====
[2025-11-25 01:17:44]  *** Error codes and diagnostics ***
[2025-11-25 01:17:44]     "exeErrorCode": 0,
[2025-11-25 01:17:44]     "exeErrorDiag": "",
[2025-11-25 01:17:44]     "pilotErrorCode": 0,
[2025-11-25 01:17:44]     "pilotErrorDiag": "",
[2025-11-25 01:17:44]  *** Listing of results directory ***
[2025-11-25 01:17:44] total 1320756
[2025-11-25 01:17:44] -rw-r--r--. 1 boinc boinc    576529 Nov 20 14:01 pilot3.tar.gz
[2025-11-25 01:17:44] -rw-r--r--. 1 boinc boinc      5112 Nov 20 14:11 queuedata.json
[2025-11-25 01:17:44] -rwx------. 1 boinc boinc     36292 Nov 20 14:12 runpilot2-wrapper.sh
[2025-11-25 01:17:44] -rw-r--r--. 1 boinc boinc       100 Nov 24 03:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 01:17:44] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 03:31 run_atlas
[2025-11-25 01:17:44] -rw-r--r--. 1 boinc boinc       105 Nov 24 03:31 job.xml
[2025-11-25 01:17:44] -rw-r--r--. 2 boinc boinc 409460005 Nov 24 03:31 EVNT.47493127._000498.pool.root.1
[2025-11-25 01:17:44] -rw-r--r--. 1 boinc boinc      6390 Nov 24 03:31 init_data.xml
[2025-11-25 01:17:44] -rw-r--r--. 2 boinc boinc     15847 Nov 24 03:31 start_atlas.sh
[2025-11-25 01:17:44] drwxrwx--x. 2 boinc boinc        68 Nov 24 03:31 shared
[2025-11-25 01:17:44] -rw-r--r--. 2 boinc boinc    590104 Nov 24 03:31 input.tar.gz
[2025-11-25 01:17:44] -rw-r--r--. 1 boinc boinc         0 Nov 24 03:31 boinc_lockfile
[2025-11-25 01:17:44] -rw-r--r--. 1 boinc boinc      2785 Nov 24 03:31 pandaJob.out
[2025-11-25 01:17:44] -rw-------. 1 boinc boinc    989786 Nov 24 03:35 agis_schedconf.cvmfs.json
[2025-11-25 01:17:44] drwx------. 5 boinc boinc      4096 Nov 24 03:35 pilot3
[2025-11-25 01:17:44] -rw-r--r--. 1 boinc boinc       533 Nov 25 00:47 boinc_task_state.xml
[2025-11-25 01:17:44] -rw-------. 1 boinc boinc 913591937 Nov 25 01:13 HITS.47523449._004973.pool.root.1
[2025-11-25 01:17:44] -rw-------. 1 boinc boinc      1032 Nov 25 01:14 memory_monitor_summary.json
[2025-11-25 01:17:44] -rw-------. 1 boinc boinc   1516227 Nov 25 01:14 agis_ddmendpoints.agis.ALL.json
[2025-11-25 01:17:44] -rw-------. 1 boinc boinc   2383656 Nov 25 01:14 log.47523449._004973.job.log.tgz.1
[2025-11-25 01:17:44] -rw-------. 1 boinc boinc        95 Nov 25 01:16 pilot_heartbeat.json
[2025-11-25 01:17:44] -rw-------. 1 boinc boinc      8630 Nov 25 01:16 heartbeat.json
[2025-11-25 01:17:44] -rw-r--r--. 1 boinc boinc      8192 Nov 25 01:17 boinc_mmap_file
[2025-11-25 01:17:44] -rw-r--r--. 1 boinc boinc        29 Nov 25 01:17 wrapper_checkpoint.txt
[2025-11-25 01:17:44] -rw-------. 1 boinc boinc      5070 Nov 25 01:17 pilotlog.txt
[2025-11-25 01:17:44] -rw-------. 1 boinc boinc  10369753 Nov 25 01:17 log.47523449._004973.job.log.1
[2025-11-25 01:17:44] -rw-------. 1 boinc boinc       353 Nov 25 01:17 output.list
[2025-11-25 01:17:44] -rw-r--r--. 1 boinc boinc       620 Nov 25 01:17 runtime_log
[2025-11-25 01:17:44] -rw-------. 1 boinc boinc  12769280 Nov 25 01:17 result.tar.gz
[2025-11-25 01:17:44] -rw-r--r--. 1 boinc boinc      8817 Nov 25 01:17 runtime_log.err
[2025-11-25 01:17:44] -rw-------. 1 boinc boinc       662 Nov 25 01:17 0gPMDmNdJg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRtHKDmsT18Pm.diag
[2025-11-25 01:17:44] -rw-r--r--. 1 boinc boinc     21482 Nov 25 01:17 stderr.txt
[2025-11-25 01:17:44] HITS file was successfully produced:
[2025-11-25 01:17:44] -rw-------. 1 boinc boinc 913591937 Nov 25 01:13 shared/HITS.pool.root.1
[2025-11-25 01:17:44]  *** Contents of shared directory: ***
[2025-11-25 01:17:44] total 1305112
[2025-11-25 01:17:44] -rw-r--r--. 2 boinc boinc 409460005 Nov 24 03:31 ATLAS.root_0
[2025-11-25 01:17:44] -rw-r--r--. 2 boinc boinc     15847 Nov 24 03:31 start_atlas.sh
[2025-11-25 01:17:44] -rw-r--r--. 2 boinc boinc    590104 Nov 24 03:31 input.tar.gz
[2025-11-25 01:17:44] -rw-------. 1 boinc boinc 913591937 Nov 25 01:13 HITS.pool.root.1
[2025-11-25 01:17:44] -rw-------. 1 boinc boinc  12769280 Nov 25 01:17 result.tar.gz
01:17:45 (27649): run_atlas exited; CPU time 335956.242087
01:17:45 (27649): called boinc_finish(0)

</stderr_txt>
]]>

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