Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:22:07 (1915086): wrapper (7.7.26015): starting
17:22:07 (1915086): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 17:22:07] Arguments: --nthreads 4
[2025-11-21 17:22:07] Threads: 4
[2025-11-21 17:22:07] Checking for CVMFS
[2025-11-21 17:22:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 17:22:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 17:22:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 17:22:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 17:22:07] 2.12.7.0 1658315 1604 65324 153128 1 81 3487220 4097025 0 130560 0 596047 99.975 39955 23839 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-11-21 17:22:07] CVMFS is ok
[2025-11-21 17:22:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 17:22:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 17:22:07] Further information can be found at the LHC@home message board.
[2025-11-21 17:22:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 17:22:07] Checking for apptainer binary...
[2025-11-21 17:22:07] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-11-21 17:22:07] apptainer is not installed, using version from CVMFS
[2025-11-21 17:22:07] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 17:22:07] pckeatlas05
[2025-11-21 17:22:07] apptainer works
[2025-11-21 17:22:07] Set ATHENA_PROC_NUMBER=4
[2025-11-21 17:22:07] Set ATHENA_CORE_NUMBER=4
[2025-11-21 17:22:07] Starting ATLAS job with PandaID=6893874688
[2025-11-21 17:22:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 07:13:40]  *** The last 200 lines of the pilot log: ***
[2025-11-22 07:13:40] 2025-11-22 06:12:30,956 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-22 07:13:40] 2025-11-22 06:12:31,447 | INFO     | monitor loop #3766: job 0:6893874688 is in state 'finished'
[2025-11-22 07:13:40] 2025-11-22 06:12:31,448 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 07:13:40] 2025-11-22 06:12:32,003 | INFO     | time since job start (49820s) is within the limit (172800.0s)
[2025-11-22 07:13:40] 2025-11-22 06:12:33,429 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-22 07:13:40] 2025-11-22 06:12:33,430 | INFO     | found 4 cores (4 cores per socket, 1 socket) , CPU MHz: 3801.22
[2025-11-22 07:13:40] 2025-11-22 06:12:33,431 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6893874688/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 07:13:40] 2025-11-22 06:12:33,431 | INFO     | extracted standard info from prmon json
[2025-11-22 07:13:40] 2025-11-22 06:12:33,431 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 07:13:40] 2025-11-22 06:12:33,431 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 07:13:40] 2025-11-22 06:12:33,439 | INFO     | fitting pss+swap vs Time
[2025-11-22 07:13:40] 2025-11-22 06:12:33,439 | INFO     | sum of square deviations: 169100130568.0
[2025-11-22 07:13:40] 2025-11-22 06:12:33,448 | INFO     | sum of deviations: 34620803150.00001
[2025-11-22 07:13:40] 2025-11-22 06:12:33,448 | INFO     | mean x: 1763767040.0
[2025-11-22 07:13:40] 2025-11-22 06:12:33,448 | INFO     | mean y: 2420327.346389229
[2025-11-22 07:13:40] 2025-11-22 06:12:33,448 | INFO     | intersect: -358685434.6018134
[2025-11-22 07:13:40] 2025-11-22 06:12:33,448 | INFO     | chi2: 2.812683229890773
[2025-11-22 07:13:40] 2025-11-22 06:12:33,449 | INFO     | sum of square deviations: 166014435503.0
[2025-11-22 07:13:40] 2025-11-22 06:12:33,457 | INFO     | sum of deviations: 157756098519.49994
[2025-11-22 07:13:40] 2025-11-22 06:12:33,457 | INFO     | mean x: 1763766887.5
[2025-11-22 07:13:40] 2025-11-22 06:12:33,457 | INFO     | mean y: 2426398.6514778323
[2025-11-22 07:13:40] 2025-11-22 06:12:33,457 | INFO     | intersect: -1673602448.0379035
[2025-11-22 07:13:40] 2025-11-22 06:12:33,457 | INFO     | chi2: 1.5282631152443247
[2025-11-22 07:13:40] 2025-11-22 06:12:33,458 | INFO     | current chi2=1.5282631152443247 (change=45.66529572177693 %)
[2025-11-22 07:13:40] 2025-11-22 06:12:33,458 | INFO     | sum of square deviations: 162966508588.0
[2025-11-22 07:13:40] 2025-11-22 06:12:33,466 | INFO     | sum of deviations: 168651339537.99988
[2025-11-22 07:13:40] 2025-11-22 06:12:33,466 | INFO     | mean x: 1763766735.0
[2025-11-22 07:13:40] 2025-11-22 06:12:33,466 | INFO     | mean y: 2426942.1375464685
[2025-11-22 07:13:40] 2025-11-22 06:12:33,466 | INFO     | intersect: -1822866027.9802287
[2025-11-22 07:13:40] 2025-11-22 06:12:33,466 | INFO     | chi2: 1.5127308368970105
[2025-11-22 07:13:40] 2025-11-22 06:12:33,466 | INFO     | current chi2=1.5127308368970105 (change=1.0163353543235276 %)
[2025-11-22 07:13:40] 2025-11-22 06:12:33,467 | INFO     | right removable region: 806
[2025-11-22 07:13:40] 2025-11-22 06:12:33,467 | INFO     | sum of square deviations: 166014435503.0
[2025-11-22 07:13:40] 2025-11-22 06:12:33,475 | INFO     | sum of deviations: -68786488502.49998
[2025-11-22 07:13:40] 2025-11-22 06:12:33,475 | INFO     | mean x: 1763767192.5
[2025-11-22 07:13:40] 2025-11-22 06:12:33,475 | INFO     | mean y: 2425422.1982758623
[2025-11-22 07:13:40] 2025-11-22 06:12:33,475 | INFO     | intersect: 733225435.705508
[2025-11-22 07:13:40] 2025-11-22 06:12:33,476 | INFO     | chi2: 1.60439448126204
[2025-11-22 07:13:40] 2025-11-22 06:12:33,476 | INFO     | current chi2=1.60439448126204 (change=42.95857904608957 %)
[2025-11-22 07:13:40] 2025-11-22 06:12:33,476 | INFO     | sum of square deviations: 162966508588.0
[2025-11-22 07:13:40] 2025-11-22 06:12:33,484 | INFO     | sum of deviations: -85365164424.99998
[2025-11-22 07:13:40] 2025-11-22 06:12:33,484 | INFO     | mean x: 1763767345.0
[2025-11-22 07:13:40] 2025-11-22 06:12:33,484 | INFO     | mean y: 2426251.3729863693
[2025-11-22 07:13:40] 2025-11-22 06:12:33,484 | INFO     | intersect: 926323380.4083533
[2025-11-22 07:13:40] 2025-11-22 06:12:33,484 | INFO     | chi2: 1.587627398001663
[2025-11-22 07:13:40] 2025-11-22 06:12:33,485 | INFO     | current chi2=1.587627398001663 (change=1.0450723594603604 %)
[2025-11-22 07:13:40] 2025-11-22 06:12:33,485 | INFO     | left removable region: 20
[2025-11-22 07:13:40] 2025-11-22 06:12:33,485 | INFO     | sum of square deviations: 150572395272.5
[2025-11-22 07:13:40] 2025-11-22 06:12:33,492 | INFO     | sum of deviations: 25827069715.49996
[2025-11-22 07:13:40] 2025-11-22 06:12:33,492 | INFO     | mean x: 1763767314.5
[2025-11-22 07:13:40] 2025-11-22 06:12:33,493 | INFO     | mean y: 2434171.919847328
[2025-11-22 07:13:40] 2025-11-22 06:12:33,493 | INFO     | intersect: -300097652.1311132
[2025-11-22 07:13:40] 2025-11-22 06:12:33,493 | INFO     | chi2: 0.2693545613445998
[2025-11-22 07:13:40] 2025-11-22 06:12:33,493 | INFO     | current memory leak: 0.17 B/s (using 786 data points, chi2=0.27)
[2025-11-22 07:13:40] 2025-11-22 06:12:33,493 | INFO     | could have reported an average CPU frequency of 3707 MHz (31 samples)
[2025-11-22 07:13:40] 2025-11-22 06:12:33,494 | INFO     | ..............................
[2025-11-22 07:13:40] 2025-11-22 06:12:33,494 | INFO     | . Timing measurements:
[2025-11-22 07:13:40] 2025-11-22 06:12:33,494 | INFO     | . get job = 0 s
[2025-11-22 07:13:40] 2025-11-22 06:12:33,494 | INFO     | . initial setup = 1 s
[2025-11-22 07:13:40] 2025-11-22 06:12:33,494 | INFO     | . payload setup = 3 s
[2025-11-22 07:13:40] 2025-11-22 06:12:33,494 | INFO     | . stage-in = 0 s
[2025-11-22 07:13:40] 2025-11-22 06:12:33,494 | INFO     | . payload execution = 49795 s
[2025-11-22 07:13:40] 2025-11-22 06:12:33,494 | INFO     | . stage-out = 0 s
[2025-11-22 07:13:40] 2025-11-22 06:12:33,494 | INFO     | . log creation = 0 s
[2025-11-22 07:13:40] 2025-11-22 06:12:33,494 | INFO     | ..............................
[2025-11-22 07:13:40] 2025-11-22 06:12:33,542 | INFO     | 
[2025-11-22 07:13:40] 2025-11-22 06:12:33,542 | INFO     | job summary report
[2025-11-22 07:13:40] 2025-11-22 06:12:33,542 | INFO     | --------------------------------------------------
[2025-11-22 07:13:40] 2025-11-22 06:12:33,543 | INFO     | PanDA job id: 6893874688
[2025-11-22 07:13:40] 2025-11-22 06:12:33,543 | INFO     | task id: 47523449
[2025-11-22 07:13:40] 2025-11-22 06:12:33,543 | INFO     | errors: (none)
[2025-11-22 07:13:40] 2025-11-22 06:12:33,543 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 07:13:40] 2025-11-22 06:12:33,543 | INFO     | pilot state: finished 
[2025-11-22 07:13:40] 2025-11-22 06:12:33,543 | INFO     | transexitcode: 0
[2025-11-22 07:13:40] 2025-11-22 06:12:33,543 | INFO     | exeerrorcode: 0
[2025-11-22 07:13:40] 2025-11-22 06:12:33,543 | INFO     | exeerrordiag: 
[2025-11-22 07:13:40] 2025-11-22 06:12:33,543 | INFO     | exitcode: 0
[2025-11-22 07:13:40] 2025-11-22 06:12:33,543 | INFO     | exitmsg: OK
[2025-11-22 07:13:40] 2025-11-22 06:12:33,543 | INFO     | cpuconsumptiontime: 196197 s
[2025-11-22 07:13:40] 2025-11-22 06:12:33,543 | INFO     | nevents: 1000
[2025-11-22 07:13:40] 2025-11-22 06:12:33,543 | INFO     | neventsw: 0
[2025-11-22 07:13:40] 2025-11-22 06:12:33,543 | INFO     | pid: 1925934
[2025-11-22 07:13:40] 2025-11-22 06:12:33,543 | INFO     | pgrp: 1925934
[2025-11-22 07:13:40] 2025-11-22 06:12:33,543 | INFO     | corecount: 4
[2025-11-22 07:13:40] 2025-11-22 06:12:33,543 | INFO     | event service: False
[2025-11-22 07:13:40] 2025-11-22 06:12:33,544 | INFO     | sizes: {0: 2298806, 2: 2299068, 11: 2299096, 49803: 2347913, 49804: 2356907, 49805: 2356963, 49808: 2357337}
[2025-11-22 07:13:40] 2025-11-22 06:12:33,544 | INFO     | --------------------------------------------------
[2025-11-22 07:13:40] 2025-11-22 06:12:33,544 | INFO     | 
[2025-11-22 07:13:40] 2025-11-22 06:12:33,544 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-11-22 07:13:40] 2025-11-22 06:12:33,552 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 07:13:40] 2025-11-22 06:12:33,553 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 07:13:40] 2025-11-22 06:12:33,553 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 07:13:40] 2025-11-22 06:12:33,553 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 07:13:40] 2025-11-22 06:12:33,553 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 07:13:40] 2025-11-22 06:12:33,553 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 07:13:40] 2025-11-22 06:12:33,553 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 07:13:40] 2025-11-22 06:12:33,553 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 07:13:40] 2025-11-22 06:12:33,553 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 07:13:40] 2025-11-22 06:12:33,553 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 07:13:40] 2025-11-22 06:12:33,553 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 07:13:40] 2025-11-22 06:12:33,553 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 07:13:40] 2025-11-22 06:12:33,553 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 07:13:40] 2025-11-22 06:12:33,553 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 07:13:40] 2025-11-22 06:12:33,554 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 07:13:40] 2025-11-22 06:12:33,554 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 07:13:40] 2025-11-22 06:12:33,554 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 07:13:40] 2025-11-22 06:12:33,554 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 07:13:40] 2025-11-22 06:12:33,554 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 07:13:40] 2025-11-22 06:12:33,554 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 07:13:40] 2025-11-22 06:12:33,554 | INFO     | job 6893874688 has completed (purged errors)
[2025-11-22 07:13:40] 2025-11-22 06:12:33,554 | INFO     | overall cleanup function is called
[2025-11-22 07:13:40] 2025-11-22 06:12:34,563 | INFO     | --- collectZombieJob: --- 10, [1925934]
[2025-11-22 07:13:40] 2025-11-22 06:12:34,563 | INFO     | zombie collector waiting for pid 1925934
[2025-11-22 07:13:40] 2025-11-22 06:12:34,563 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 07:13:40] 2025-11-22 06:12:34,563 | INFO     | collected zombie processes
[2025-11-22 07:13:40] 2025-11-22 06:12:34,563 | INFO     | will attempt to kill all subprocesses of pid=1925934
[2025-11-22 07:13:40] 2025-11-22 06:12:34,606 | INFO     | process IDs to be killed: [1925934] (in reverse order)
[2025-11-22 07:13:40] 2025-11-22 06:12:34,625 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 07:13:40] 2025-11-22 06:12:34,625 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 07:13:40] 2025-11-22 06:12:34,626 | INFO     | did not find any defunct processes belonging to 1925934
[2025-11-22 07:13:40] 2025-11-22 06:12:34,628 | INFO     | did not find any defunct processes belonging to 1925934
[2025-11-22 07:13:40] 2025-11-22 06:12:34,628 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 07:13:40] 2025-11-22 06:12:34,628 | INFO     | ready for new job
[2025-11-22 07:13:40] 2025-11-22 06:12:34,628 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 07:13:40] 2025-11-22 06:12:34,630 | INFO     | ***************************************
[2025-11-22 07:13:40] 2025-11-22 06:12:34,630 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 07:13:40] 2025-11-22 06:12:34,630 | INFO     | ***************************************
[2025-11-22 07:13:40] 2025-11-22 06:12:34,630 | INFO     | 
[2025-11-22 07:13:40] 2025-11-22 06:12:34,630 | INFO     | architecture information:
[2025-11-22 07:13:40] 2025-11-22 06:12:34,630 | INFO     | executing command: cat /etc/os-release
[2025-11-22 07:13:40] 2025-11-22 06:12:34,636 | INFO     | cat /etc/os-release:
[2025-11-22 07:13:40] NAME="CentOS Linux"
[2025-11-22 07:13:40] VERSION="7 (Core)"
[2025-11-22 07:13:40] ID="centos"
[2025-11-22 07:13:40] ID_LIKE="rhel fedora"
[2025-11-22 07:13:40] VERSION_ID="7"
[2025-11-22 07:13:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 07:13:40] ANSI_COLOR="0;31"
[2025-11-22 07:13:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 07:13:40] HOME_URL="https://www.centos.org/"
[2025-11-22 07:13:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 07:13:40] 
[2025-11-22 07:13:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 07:13:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 07:13:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 07:13:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 07:13:40] 
[2025-11-22 07:13:40] 2025-11-22 06:12:34,636 | INFO     | ***************************************
[2025-11-22 07:13:40] 2025-11-22 06:12:35,139 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-11-22 07:13:40] 2025-11-22 06:12:35,147 | INFO     | sufficient remaining disk space (45956988928 B)
[2025-11-22 07:13:40] 2025-11-22 06:12:35,147 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 07:13:40] 2025-11-22 06:12:35,147 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 07:13:40] 2025-11-22 06:12:35,147 | INFO     | update_server=False
[2025-11-22 07:13:40] 2025-11-22 06:12:35,147 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 07:13:40] 2025-11-22 06:12:35,147 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 07:13:40] 2025-11-22 06:12:35,147 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 07:13:40] 2025-11-22 06:12:35,147 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 07:13:40] 2025-11-22 06:12:35,147 | INFO     | aborting loop
[2025-11-22 07:13:40] 2025-11-22 06:12:35,229 | INFO     | all job control threads have been joined
[2025-11-22 07:13:40] 2025-11-22 06:12:36,065 | INFO     | all data control threads have been joined
[2025-11-22 07:13:40] 2025-11-22 06:12:36,085 | INFO     | all payload control threads have been joined
[2025-11-22 07:13:40] 2025-11-22 06:12:36,152 | INFO     | [job] retrieve thread has finished
[2025-11-22 07:13:40] 2025-11-22 06:12:36,153 | INFO     | [job] queue monitor thread has finished
[2025-11-22 07:13:40] 2025-11-22 06:12:36,153 | INFO     | [job] job monitor thread has finished
[2025-11-22 07:13:40] 2025-11-22 06:12:36,234 | INFO     | [job] control thread has finished
[2025-11-22 07:13:40] 2025-11-22 06:12:36,759 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 07:13:40] 2025-11-22 06:12:36,868 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 07:13:40] 2025-11-22 06:12:36,916 | INFO     | [job] validate thread has finished
[2025-11-22 07:13:40] 2025-11-22 06:12:36,947 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 07:13:40] 2025-11-22 06:12:36,950 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 07:13:40] 2025-11-22 06:12:37,045 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 07:13:40] 2025-11-22 06:12:37,070 | INFO     | [data] control thread has finished
[2025-11-22 07:13:40] 2025-11-22 06:12:37,091 | INFO     | [payload] control thread has finished
[2025-11-22 07:13:40] 2025-11-22 06:12:37,153 | INFO     | [data] copytool_out thread has finished
[2025-11-22 07:13:40] 2025-11-22 06:12:37,304 | INFO     | [payload] validate_post thread has finished
[2025-11-22 07:13:40] 2025-11-22 06:12:37,404 | INFO     | [payload] failed_post thread has finished
[2025-11-22 07:13:40] 2025-11-22 06:12:37,610 | INFO     | [data] copytool_in thread has finished
[2025-11-22 07:13:40] 2025-11-22 06:12:40,956 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 07:13:40] 2025-11-22 06:13:05,130 | INFO     | PID=1918754 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 07:13:40] 2025-11-22 06:13:05,130 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 07:13:40] 2025-11-22 06:13:05,131 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 07:13:40] 2025-11-22 06:13:05,131 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 07:13:40] 2025-11-22 06:13:34,840 | INFO     | [monitor] cgroup control has ended
[2025-11-22 07:13:40] 2025-11-22 06:13:35,104 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139723528062784)>', '<ExcThread(monitor, started 139722852652800)>']
[2025-11-22 07:13:40] 2025-11-22 06:13:35,268 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 07:13:40] 2025-11-22 06:13:35,268 | INFO     | [monitor] control thread has ended
[2025-11-22 07:13:40] 2025-11-22 06:13:40,129 | INFO     | all workflow threads have been joined
[2025-11-22 07:13:40] 2025-11-22 06:13:40,129 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 07:13:40] 2025-11-22 06:13:40,129 | INFO     | traces error code: 0
[2025-11-22 07:13:40] 2025-11-22 06:13:40,129 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 07:13:40] 2025-11-22 06:13:40,198 [wrapper] ==== pilot stdout END ====
[2025-11-22 07:13:40] 2025-11-22 06:13:40,199 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 07:13:40] 2025-11-22 06:13:40,201 [wrapper] pilotpid: 1918754
[2025-11-22 07:13:40] 2025-11-22 06:13:40,202 [wrapper] Pilot exit status: 0
[2025-11-22 07:13:40] 2025-11-22 06:13:40,206 [wrapper] pandaids: 6893874688
[2025-11-22 07:13:40] 2025-11-22 06:13:40,221 [wrapper] cleanup supervisor_pilot 2045536 1918755
[2025-11-22 07:13:40] 2025-11-22 06:13:40,222 [wrapper] Test setup, not cleaning
[2025-11-22 07:13:40] 2025-11-22 06:13:40,223 [wrapper] apfmon messages muted
[2025-11-22 07:13:40] 2025-11-22 06:13:40,224 [wrapper] ==== wrapper stdout END ====
[2025-11-22 07:13:40] 2025-11-22 06:13:40,226 [wrapper] ==== wrapper stderr END ====
[2025-11-22 07:13:40]  *** Error codes and diagnostics ***
[2025-11-22 07:13:40]     "exeErrorCode": 0,
[2025-11-22 07:13:40]     "exeErrorDiag": "",
[2025-11-22 07:13:40]     "pilotErrorCode": 0,
[2025-11-22 07:13:40]     "pilotErrorDiag": "",
[2025-11-22 07:13:40]  *** Listing of results directory ***
[2025-11-22 07:13:40] total 1322772
[2025-11-22 07:13:40] -rw-r--r-- 1 boinc boinc    576529 Nov 20 17:08 pilot3.tar.gz
[2025-11-22 07:13:40] -rwx------ 1 boinc boinc     36292 Nov 20 17:19 runpilot2-wrapper.sh
[2025-11-22 07:13:40] -rw-r--r-- 1 boinc boinc      5112 Nov 20 17:19 queuedata.json
[2025-11-22 07:13:40] -rw-r--r-- 1 boinc boinc       100 Nov 21 17:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 07:13:40] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 17:22 run_atlas
[2025-11-22 07:13:40] -rw-r--r-- 1 boinc boinc       105 Nov 21 17:22 job.xml
[2025-11-22 07:13:40] -rw-r--r-- 2 boinc boinc     15847 Nov 21 17:22 start_atlas.sh
[2025-11-22 07:13:40] drwxrwx--x 2 boinc boinc        68 Nov 21 17:22 shared
[2025-11-22 07:13:40] -rw-r--r-- 2 boinc boinc    590099 Nov 21 17:22 input.tar.gz
[2025-11-22 07:13:40] -rw-r--r-- 1 boinc boinc      6313 Nov 21 17:22 init_data.xml
[2025-11-22 07:13:40] -rw-r--r-- 2 boinc boinc 411252149 Nov 21 17:22 EVNT.47493127._000731.pool.root.1
[2025-11-22 07:13:40] -rw-r--r-- 1 boinc boinc         0 Nov 21 17:22 boinc_lockfile
[2025-11-22 07:13:40] -rw-r--r-- 1 boinc boinc      2785 Nov 21 17:22 pandaJob.out
[2025-11-22 07:13:40] -rw------- 1 boinc boinc    989817 Nov 21 17:22 agis_schedconf.cvmfs.json
[2025-11-22 07:13:40] drwx------ 5 boinc boinc      4096 Nov 21 17:22 pilot3
[2025-11-22 07:13:40] -rw-r--r-- 1 boinc boinc       532 Nov 22 07:04 boinc_task_state.xml
[2025-11-22 07:13:40] -rw------- 1 boinc boinc 922335950 Nov 22 07:12 HITS.47523449._007305.pool.root.1
[2025-11-22 07:13:40] -rw------- 1 boinc boinc      1026 Nov 22 07:12 memory_monitor_summary.json
[2025-11-22 07:13:40] -rw------- 1 boinc boinc   1526164 Nov 22 07:12 agis_ddmendpoints.agis.ALL.json
[2025-11-22 07:13:40] -rw------- 1 boinc boinc   1542728 Nov 22 07:12 log.47523449._007305.job.log.tgz.1
[2025-11-22 07:13:40] -rw------- 1 boinc boinc      8579 Nov 22 07:12 heartbeat.json
[2025-11-22 07:13:40] -rw------- 1 boinc boinc        95 Nov 22 07:13 pilot_heartbeat.json
[2025-11-22 07:13:40] -rw-r--r-- 1 boinc boinc        29 Nov 22 07:13 wrapper_checkpoint.txt
[2025-11-22 07:13:40] -rw-r--r-- 1 boinc boinc      8192 Nov 22 07:13 boinc_mmap_file
[2025-11-22 07:13:40] -rw------- 1 boinc boinc      4748 Nov 22 07:13 pilotlog.txt
[2025-11-22 07:13:40] -rw------- 1 boinc boinc   6971032 Nov 22 07:13 log.47523449._007305.job.log.1
[2025-11-22 07:13:40] -rw------- 1 boinc boinc       353 Nov 22 07:13 output.list
[2025-11-22 07:13:40] -rw-r--r-- 1 boinc boinc       620 Nov 22 07:13 runtime_log
[2025-11-22 07:13:40] -rw------- 1 boinc boinc   8529920 Nov 22 07:13 result.tar.gz
[2025-11-22 07:13:40] -rw------- 1 boinc boinc       658 Nov 22 07:13 xl5KDm3YMg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQIIKDmEJe6Eo.diag
[2025-11-22 07:13:40] -rw-r--r-- 1 boinc boinc      8831 Nov 22 07:13 runtime_log.err
[2025-11-22 07:13:40] -rw-r--r-- 1 boinc boinc     21462 Nov 22 07:13 stderr.txt
[2025-11-22 07:13:40] HITS file was successfully produced:
[2025-11-22 07:13:40] -rw------- 1 boinc boinc 922335950 Nov 22 07:12 shared/HITS.pool.root.1
[2025-11-22 07:13:40]  *** Contents of shared directory: ***
[2025-11-22 07:13:40] total 1311264
[2025-11-22 07:13:40] -rw-r--r-- 2 boinc boinc     15847 Nov 21 17:22 start_atlas.sh
[2025-11-22 07:13:40] -rw-r--r-- 2 boinc boinc    590099 Nov 21 17:22 input.tar.gz
[2025-11-22 07:13:40] -rw-r--r-- 2 boinc boinc 411252149 Nov 21 17:22 ATLAS.root_0
[2025-11-22 07:13:40] -rw------- 1 boinc boinc 922335950 Nov 22 07:12 HITS.pool.root.1
[2025-11-22 07:13:40] -rw------- 1 boinc boinc   8529920 Nov 22 07:13 result.tar.gz
07:13:41 (1915086): run_atlas exited; CPU time 196384.024517
07:13:41 (1915086): called boinc_finish(0)

</stderr_txt>
]]>

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