Stderr output

<core_client_version>7.23.1</core_client_version>
<![CDATA[
<stderr_txt>
21:44:02 (162201): wrapper (7.7.26015): starting
21:44:02 (162201): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 21:44:02] Arguments: --nthreads 8
[2025-11-20 21:44:02] Threads: 8
[2025-11-20 21:44:02] Checking for CVMFS
[2025-11-20 21:44:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 21:44:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 21:44:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 21:44:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 21:44:02] 2.13.3.0 4524 101 52244 153110 2 90 1197872 4096000 6594 130560 0 3931192 99.844 503027 867 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 0
[2025-11-20 21:44:02] CVMFS is ok
[2025-11-20 21:44:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 21:44:02] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-20 21:44:02] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-20 21:44:02] Further information can be found at the LHC@home message board.
[2025-11-20 21:44:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 21:44:02] Checking for apptainer binary...
[2025-11-20 21:44:02] apptainer is not installed, using version from CVMFS
[2025-11-20 21:44:02] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 21:44:02] 7950x-linux
[2025-11-20 21:44:02] apptainer works
[2025-11-20 21:44:02] Set ATHENA_PROC_NUMBER=8
[2025-11-20 21:44:02] Set ATHENA_CORE_NUMBER=8
[2025-11-20 21:44:02] Starting ATLAS job with PandaID=6893834487
[2025-11-20 21:44:02] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc501/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 11:51:44]  *** The last 200 lines of the pilot log: ***
[2025-11-21 11:51:44] 2025-11-21 19:50:42,343 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 11:51:44] 2025-11-21 19:50:44,263 | INFO     | time since job start (50791s) is within the limit (172800.0s)
[2025-11-21 11:51:44] 2025-11-21 19:50:44,273 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-21 11:51:44] 2025-11-21 19:50:44,276 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3999.8606249999993
[2025-11-21 11:51:44] 2025-11-21 19:50:44,280 | INFO     | using path: /var/lib/multiboinc/boinc501/slots/4/PanDA_Pilot-6893834487/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 11:51:44] 2025-11-21 19:50:44,280 | INFO     | extracted standard info from prmon json
[2025-11-21 11:51:44] 2025-11-21 19:50:44,280 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 11:51:44] 2025-11-21 19:50:44,280 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 11:51:44] 2025-11-21 19:50:44,287 | INFO     | fitting pss+swap vs Time
[2025-11-21 11:51:44] 2025-11-21 19:50:44,287 | INFO     | sum of square deviations: 178586150288.0
[2025-11-21 11:51:44] 2025-11-21 19:50:44,297 | INFO     | sum of deviations: 1227605978705.5
[2025-11-21 11:51:44] 2025-11-21 19:50:44,298 | INFO     | mean x: 1763729223.5
[2025-11-21 11:51:44] 2025-11-21 19:50:44,298 | INFO     | mean y: 2876367.7896634615
[2025-11-21 11:51:44] 2025-11-21 19:50:44,298 | INFO     | intersect: -12121045538.217714
[2025-11-21 11:51:44] 2025-11-21 19:50:44,298 | INFO     | chi2: 4.678934453761062
[2025-11-21 11:51:44] 2025-11-21 19:50:44,299 | INFO     | sum of square deviations: 175385755398.0
[2025-11-21 11:51:44] 2025-11-21 19:50:44,306 | INFO     | sum of deviations: 1434740929344.0
[2025-11-21 11:51:44] 2025-11-21 19:50:44,306 | INFO     | mean x: 1763729071.0
[2025-11-21 11:51:44] 2025-11-21 19:50:44,307 | INFO     | mean y: 2886224.5102781137
[2025-11-21 11:51:44] 2025-11-21 19:50:44,307 | INFO     | intersect: -14425276887.682959
[2025-11-21 11:51:44] 2025-11-21 19:50:44,307 | INFO     | chi2: 2.483413897953288
[2025-11-21 11:51:44] 2025-11-21 19:50:44,307 | INFO     | current chi2=2.483413897953288 (change=46.92351597366259 %)
[2025-11-21 11:51:44] 2025-11-21 19:50:44,308 | INFO     | sum of square deviations: 172223826345.5
[2025-11-21 11:51:44] 2025-11-21 19:50:44,318 | INFO     | sum of deviations: 1418220516687.0002
[2025-11-21 11:51:44] 2025-11-21 19:50:44,318 | INFO     | mean x: 1763728918.5
[2025-11-21 11:51:44] 2025-11-21 19:50:44,318 | INFO     | mean y: 2885427.727493917
[2025-11-21 11:51:44] 2025-11-21 19:50:44,318 | INFO     | intersect: -14520984998.150032
[2025-11-21 11:51:44] 2025-11-21 19:50:44,319 | INFO     | chi2: 2.481321080612701
[2025-11-21 11:51:44] 2025-11-21 19:50:44,319 | INFO     | current chi2=2.481321080612701 (change=0.08427178982576256 %)
[2025-11-21 11:51:44] 2025-11-21 19:50:44,319 | INFO     | right removable region: 821
[2025-11-21 11:51:44] 2025-11-21 19:50:44,319 | INFO     | sum of square deviations: 175385755398.0
[2025-11-21 11:51:44] 2025-11-21 19:50:44,327 | INFO     | sum of deviations: 993386169979.9999
[2025-11-21 11:51:44] 2025-11-21 19:50:44,327 | INFO     | mean x: 1763729376.0
[2025-11-21 11:51:44] 2025-11-21 19:50:44,327 | INFO     | mean y: 2887513.7134220074
[2025-11-21 11:51:44] 2025-11-21 19:50:44,327 | INFO     | intersect: -9986888256.444902
[2025-11-21 11:51:44] 2025-11-21 19:50:44,328 | INFO     | chi2: 2.3765633466221345
[2025-11-21 11:51:44] 2025-11-21 19:50:44,328 | INFO     | current chi2=2.3765633466221345 (change=49.20716735598242 %)
[2025-11-21 11:51:44] 2025-11-21 19:50:44,328 | INFO     | sum of square deviations: 172223826345.5
[2025-11-21 11:51:44] 2025-11-21 19:50:44,336 | INFO     | sum of deviations: 942060759518.5011
[2025-11-21 11:51:44] 2025-11-21 19:50:44,336 | INFO     | mean x: 1763729528.5
[2025-11-21 11:51:44] 2025-11-21 19:50:44,336 | INFO     | mean y: 2889987.6557177617
[2025-11-21 11:51:44] 2025-11-21 19:50:44,336 | INFO     | intersect: -9644673967.117208
[2025-11-21 11:51:44] 2025-11-21 19:50:44,336 | INFO     | chi2: 2.331140034959765
[2025-11-21 11:51:44] 2025-11-21 19:50:44,336 | INFO     | current chi2=2.331140034959765 (change=1.9113023739481174 %)
[2025-11-21 11:51:44] 2025-11-21 19:50:44,336 | INFO     | left removable region: 20
[2025-11-21 11:51:44] 2025-11-21 19:50:44,337 | INFO     | sum of square deviations: 159358522800.0
[2025-11-21 11:51:44] 2025-11-21 19:50:44,347 | INFO     | sum of deviations: 1065915454911.0002
[2025-11-21 11:51:44] 2025-11-21 19:50:44,347 | INFO     | mean x: 1763729498.0
[2025-11-21 11:51:44] 2025-11-21 19:50:44,347 | INFO     | mean y: 2902468.7852684143
[2025-11-21 11:51:44] 2025-11-21 19:50:44,347 | INFO     | intersect: -11794311117.086525
[2025-11-21 11:51:44] 2025-11-21 19:50:44,348 | INFO     | chi2: 0.10462726060967105
[2025-11-21 11:51:44] 2025-11-21 19:50:44,348 | INFO     | current memory leak: 6.69 B/s (using 801 data points, chi2=0.10)
[2025-11-21 11:51:44] 2025-11-21 19:50:44,348 | INFO     | could have reported an average CPU frequency of 3999 MHz (32 samples)
[2025-11-21 11:51:44] 2025-11-21 19:50:44,348 | INFO     | ..............................
[2025-11-21 11:51:44] 2025-11-21 19:50:44,348 | INFO     | . Timing measurements:
[2025-11-21 11:51:44] 2025-11-21 19:50:44,348 | INFO     | . get job = 0 s
[2025-11-21 11:51:44] 2025-11-21 19:50:44,348 | INFO     | . initial setup = 3 s
[2025-11-21 11:51:44] 2025-11-21 19:50:44,349 | INFO     | . payload setup = 5 s
[2025-11-21 11:51:44] 2025-11-21 19:50:44,349 | INFO     | . stage-in = 0 s
[2025-11-21 11:51:44] 2025-11-21 19:50:44,349 | INFO     | . payload execution = 50755 s
[2025-11-21 11:51:44] 2025-11-21 19:50:44,349 | INFO     | . stage-out = 3 s
[2025-11-21 11:51:44] 2025-11-21 19:50:44,349 | INFO     | . log creation = 0 s
[2025-11-21 11:51:44] 2025-11-21 19:50:44,349 | INFO     | ..............................
[2025-11-21 11:51:44] 2025-11-21 19:50:44,487 | INFO     | 
[2025-11-21 11:51:44] 2025-11-21 19:50:44,488 | INFO     | job summary report
[2025-11-21 11:51:44] 2025-11-21 19:50:44,488 | INFO     | --------------------------------------------------
[2025-11-21 11:51:44] 2025-11-21 19:50:44,488 | INFO     | PanDA job id: 6893834487
[2025-11-21 11:51:44] 2025-11-21 19:50:44,488 | INFO     | task id: 47523449
[2025-11-21 11:51:44] 2025-11-21 19:50:44,488 | INFO     | errors: (none)
[2025-11-21 11:51:44] 2025-11-21 19:50:44,488 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 11:51:44] 2025-11-21 19:50:44,488 | INFO     | pilot state: finished 
[2025-11-21 11:51:44] 2025-11-21 19:50:44,488 | INFO     | transexitcode: 0
[2025-11-21 11:51:44] 2025-11-21 19:50:44,488 | INFO     | exeerrorcode: 0
[2025-11-21 11:51:44] 2025-11-21 19:50:44,488 | INFO     | exeerrordiag: 
[2025-11-21 11:51:44] 2025-11-21 19:50:44,488 | INFO     | exitcode: 0
[2025-11-21 11:51:44] 2025-11-21 19:50:44,488 | INFO     | exitmsg: OK
[2025-11-21 11:51:44] 2025-11-21 19:50:44,488 | INFO     | cpuconsumptiontime: 134397 s
[2025-11-21 11:51:44] 2025-11-21 19:50:44,488 | INFO     | nevents: 1000
[2025-11-21 11:51:44] 2025-11-21 19:50:44,488 | INFO     | neventsw: 0
[2025-11-21 11:51:44] 2025-11-21 19:50:44,488 | INFO     | pid: 172723
[2025-11-21 11:51:44] 2025-11-21 19:50:44,488 | INFO     | pgrp: 172723
[2025-11-21 11:51:44] 2025-11-21 19:50:44,488 | INFO     | corecount: 8
[2025-11-21 11:51:44] 2025-11-21 19:50:44,488 | INFO     | event service: False
[2025-11-21 11:51:44] 2025-11-21 19:50:44,488 | INFO     | sizes: {0: 2298811, 4: 2299073, 11: 2299101, 50764: 2347606, 50765: 2347605, 50769: 2356683, 50772: 2356867, 50777: 2357113}
[2025-11-21 11:51:44] 2025-11-21 19:50:44,488 | INFO     | --------------------------------------------------
[2025-11-21 11:51:44] 2025-11-21 19:50:44,488 | INFO     | 
[2025-11-21 11:51:44] 2025-11-21 19:50:44,488 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc501/slots/4
[2025-11-21 11:51:44] 2025-11-21 19:50:44,514 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 11:51:44] 2025-11-21 19:50:44,515 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 11:51:44] 2025-11-21 19:50:44,515 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 11:51:44] 2025-11-21 19:50:44,515 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 11:51:44] 2025-11-21 19:50:44,515 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 11:51:44] 2025-11-21 19:50:44,515 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 11:51:44] 2025-11-21 19:50:44,515 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 11:51:44] 2025-11-21 19:50:44,515 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 11:51:44] 2025-11-21 19:50:44,515 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 11:51:44] 2025-11-21 19:50:44,515 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 11:51:44] 2025-11-21 19:50:44,515 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 11:51:44] 2025-11-21 19:50:44,515 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 11:51:44] 2025-11-21 19:50:44,515 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 11:51:44] 2025-11-21 19:50:44,515 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 11:51:44] 2025-11-21 19:50:44,515 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 11:51:44] 2025-11-21 19:50:44,515 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 11:51:44] 2025-11-21 19:50:44,515 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 11:51:44] 2025-11-21 19:50:44,515 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 11:51:44] 2025-11-21 19:50:44,515 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 11:51:44] 2025-11-21 19:50:44,515 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 11:51:44] 2025-11-21 19:50:44,515 | INFO     | job 6893834487 has completed (purged errors)
[2025-11-21 11:51:44] 2025-11-21 19:50:44,515 | INFO     | overall cleanup function is called
[2025-11-21 11:51:44] 2025-11-21 19:50:45,528 | INFO     | --- collectZombieJob: --- 10, [172723]
[2025-11-21 11:51:44] 2025-11-21 19:50:45,529 | INFO     | zombie collector waiting for pid 172723
[2025-11-21 11:51:44] 2025-11-21 19:50:45,529 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 11:51:44] 2025-11-21 19:50:45,529 | INFO     | collected zombie processes
[2025-11-21 11:51:44] 2025-11-21 19:50:45,529 | INFO     | will attempt to kill all subprocesses of pid=172723
[2025-11-21 11:51:44] 2025-11-21 19:50:45,810 | INFO     | process IDs to be killed: [172723] (in reverse order)
[2025-11-21 11:51:44] 2025-11-21 19:50:45,919 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 11:51:44] 2025-11-21 19:50:45,919 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 11:51:44] 2025-11-21 19:50:45,924 | INFO     | did not find any defunct processes belonging to 172723
[2025-11-21 11:51:44] 2025-11-21 19:50:45,928 | INFO     | did not find any defunct processes belonging to 172723
[2025-11-21 11:51:44] 2025-11-21 19:50:45,928 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 11:51:44] 2025-11-21 19:50:45,928 | INFO     | ready for new job
[2025-11-21 11:51:44] 2025-11-21 19:50:45,929 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 11:51:44] 2025-11-21 19:50:45,932 | INFO     | ***************************************
[2025-11-21 11:51:44] 2025-11-21 19:50:45,932 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 11:51:44] 2025-11-21 19:50:45,932 | INFO     | ***************************************
[2025-11-21 11:51:44] 2025-11-21 19:50:45,932 | INFO     | 
[2025-11-21 11:51:44] 2025-11-21 19:50:45,933 | INFO     | architecture information:
[2025-11-21 11:51:44] 2025-11-21 19:50:45,933 | INFO     | executing command: cat /etc/os-release
[2025-11-21 11:51:44] 2025-11-21 19:50:45,945 | INFO     | cat /etc/os-release:
[2025-11-21 11:51:44] NAME="CentOS Linux"
[2025-11-21 11:51:44] VERSION="7 (Core)"
[2025-11-21 11:51:44] ID="centos"
[2025-11-21 11:51:44] ID_LIKE="rhel fedora"
[2025-11-21 11:51:44] VERSION_ID="7"
[2025-11-21 11:51:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 11:51:44] ANSI_COLOR="0;31"
[2025-11-21 11:51:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 11:51:44] HOME_URL="https://www.centos.org/"
[2025-11-21 11:51:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 11:51:44] 
[2025-11-21 11:51:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 11:51:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 11:51:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 11:51:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 11:51:44] 
[2025-11-21 11:51:44] 2025-11-21 19:50:45,945 | INFO     | ***************************************
[2025-11-21 11:51:44] 2025-11-21 19:50:46,448 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc501/slots/4
[2025-11-21 11:51:44] 2025-11-21 19:50:46,462 | INFO     | sufficient remaining disk space (200042086400 B)
[2025-11-21 11:51:44] 2025-11-21 19:50:46,462 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 11:51:44] 2025-11-21 19:50:46,462 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 11:51:44] 2025-11-21 19:50:46,462 | INFO     | update_server=False
[2025-11-21 11:51:44] 2025-11-21 19:50:46,462 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 11:51:44] 2025-11-21 19:50:46,462 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 11:51:44] 2025-11-21 19:50:46,463 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 11:51:44] 2025-11-21 19:50:46,463 | INFO     | aborting loop
[2025-11-21 11:51:44] 2025-11-21 19:50:46,535 | INFO     | all payload control threads have been joined
[2025-11-21 11:51:44] 2025-11-21 19:50:46,818 | INFO     | all job control threads have been joined
[2025-11-21 11:51:44] 2025-11-21 19:50:46,870 | INFO     | all data control threads have been joined
[2025-11-21 11:51:44] 2025-11-21 19:50:47,119 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 11:51:44] 2025-11-21 19:50:47,468 | INFO     | [job] retrieve thread has finished
[2025-11-21 11:51:44] 2025-11-21 19:50:47,468 | INFO     | [job] job monitor thread has finished
[2025-11-21 11:51:44] 2025-11-21 19:50:47,540 | INFO     | [payload] control thread has finished
[2025-11-21 11:51:44] 2025-11-21 19:50:47,645 | INFO     | [job] validate thread has finished
[2025-11-21 11:51:44] 2025-11-21 19:50:47,823 | INFO     | [job] control thread has finished
[2025-11-21 11:51:44] 2025-11-21 19:50:47,864 | INFO     | [payload] validate_post thread has finished
[2025-11-21 11:51:44] 2025-11-21 19:50:47,875 | INFO     | [data] control thread has finished
[2025-11-21 11:51:44] 2025-11-21 19:50:47,918 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 11:51:44] 2025-11-21 19:50:48,400 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 11:51:44] 2025-11-21 19:50:48,455 | INFO     | [payload] failed_post thread has finished
[2025-11-21 11:51:44] 2025-11-21 19:50:48,481 | INFO     | [data] copytool_in thread has finished
[2025-11-21 11:51:44] 2025-11-21 19:50:48,836 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 11:51:44] 2025-11-21 19:50:49,124 | INFO     | [data] copytool_out thread has finished
[2025-11-21 11:51:44] 2025-11-21 19:50:49,411 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 11:51:44] 2025-11-21 19:50:50,416 | INFO     | [job] queue monitor thread has finished
[2025-11-21 11:51:44] 2025-11-21 19:50:50,467 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 11:51:44] 2025-11-21 19:50:57,112 | INFO     | job.realtimelogging is not enabled
[2025-11-21 11:51:44] 2025-11-21 19:50:58,117 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 11:51:44] 2025-11-21 19:51:17,658 | INFO     | PID=166048 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-21 11:51:44] 2025-11-21 19:51:17,659 | INFO     | .. there are 12 such processes running
[2025-11-21 11:51:44] 2025-11-21 19:51:17,659 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 11:51:44] 2025-11-21 19:51:17,659 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 11:51:44] 2025-11-21 19:51:17,659 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 11:51:44] 2025-11-21 19:51:37,636 | INFO     | [monitor] cgroup control has ended
[2025-11-21 11:51:44] 2025-11-21 19:51:39,444 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 127283767285568)>', '<ExcThread(monitor, started 127282681206528)>']
[2025-11-21 11:51:44] 2025-11-21 19:51:39,772 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 11:51:44] 2025-11-21 19:51:39,773 | INFO     | [monitor] control thread has ended
[2025-11-21 11:51:44] 2025-11-21 19:51:44,469 | INFO     | all workflow threads have been joined
[2025-11-21 11:51:44] 2025-11-21 19:51:44,470 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 11:51:44] 2025-11-21 19:51:44,470 | INFO     | traces error code: 0
[2025-11-21 11:51:44] 2025-11-21 19:51:44,470 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 11:51:44] 2025-11-21 19:51:44,558 [wrapper] ==== pilot stdout END ====
[2025-11-21 11:51:44] 2025-11-21 19:51:44,560 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 11:51:44] 2025-11-21 19:51:44,562 [wrapper] pilotpid: 166048
[2025-11-21 11:51:44] 2025-11-21 19:51:44,563 [wrapper] Pilot exit status: 0
[2025-11-21 11:51:44] 2025-11-21 19:51:44,569 [wrapper] pandaids: 6893834487
[2025-11-21 11:51:44] 2025-11-21 19:51:44,621 [wrapper] cleanup supervisor_pilot 1178788 166049
[2025-11-21 11:51:44] 2025-11-21 19:51:44,631 [wrapper] Test setup, not cleaning
[2025-11-21 11:51:44] 2025-11-21 19:51:44,633 [wrapper] apfmon messages muted
[2025-11-21 11:51:44] 2025-11-21 19:51:44,635 [wrapper] ==== wrapper stdout END ====
[2025-11-21 11:51:44] 2025-11-21 19:51:44,641 [wrapper] ==== wrapper stderr END ====
[2025-11-21 11:51:44]  *** Error codes and diagnostics ***
[2025-11-21 11:51:44]     "exeErrorCode": 0,
[2025-11-21 11:51:44]     "exeErrorDiag": "",
[2025-11-21 11:51:44]     "pilotErrorCode": 0,
[2025-11-21 11:51:44]     "pilotErrorDiag": "",
[2025-11-21 11:51:44]  *** Listing of results directory ***
[2025-11-21 11:51:44] total 1332428
[2025-11-21 11:51:44] -rw-r--r-- 1 root root    576529 Nov 20 02:06 pilot3.tar.gz
[2025-11-21 11:51:44] -rw-r--r-- 1 root root      5112 Nov 20 02:08 queuedata.json
[2025-11-21 11:51:44] -rwx------ 1 4871 1028     36292 Nov 20 02:09 runpilot2-wrapper.sh
[2025-11-21 11:51:44] -rw-r--r-- 1 root root       100 Nov 20 21:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 11:51:44] -rwxr-xr-x 1 root root      7986 Nov 20 21:44 run_atlas
[2025-11-21 11:51:44] -rw-r--r-- 1 root root       105 Nov 20 21:44 job.xml
[2025-11-21 11:51:44] drwxrwx--x 2 root root      4096 Nov 20 21:44 shared
[2025-11-21 11:51:44] -rw-r--r-- 2 root root    590097 Nov 20 21:44 input.tar.gz
[2025-11-21 11:51:44] -rw-r--r-- 1 root root     13009 Nov 20 21:44 init_data.xml
[2025-11-21 11:51:44] -rw-r--r-- 2 root root 409187710 Nov 20 21:44 EVNT.47493127._000060.pool.root.1
[2025-11-21 11:51:44] -rw-r--r-- 2 root root     15847 Nov 20 21:44 start_atlas.sh
[2025-11-21 11:51:44] -rw-r--r-- 1 root root         0 Nov 20 21:44 boinc_lockfile
[2025-11-21 11:51:44] -rw-r--r-- 1 root root      2781 Nov 20 21:44 pandaJob.out
[2025-11-21 11:51:44] -rw------- 1 root root    989817 Nov 20 21:44 agis_schedconf.cvmfs.json
[2025-11-21 11:51:44] drwxr-xr-x 5  320  320      4096 Nov 20 21:44 pilot3
[2025-11-21 11:51:44] -rw-r--r-- 1 root root       533 Nov 21 11:44 boinc_task_state.xml
[2025-11-21 11:51:44] -rw------- 1 root root 932787796 Nov 21 11:50 HITS.47523449._000591.pool.root.1
[2025-11-21 11:51:44] -rw------- 1 root root        95 Nov 21 11:50 pilot_heartbeat.json
[2025-11-21 11:51:44] -rw------- 1 root root      1042 Nov 21 11:50 memory_monitor_summary.json
[2025-11-21 11:51:44] -rw------- 1 root root   1526164 Nov 21 11:50 agis_ddmendpoints.agis.ALL.json
[2025-11-21 11:51:44] -rw------- 1 root root   2011469 Nov 21 11:50 log.47523449._000591.job.log.tgz.1
[2025-11-21 11:51:44] -rw------- 1 root root      8573 Nov 21 11:50 heartbeat.json
[2025-11-21 11:51:44] -rw-r--r-- 1 root root      8192 Nov 21 11:51 boinc_mmap_file
[2025-11-21 11:51:44] -rw-r--r-- 1 root root        29 Nov 21 11:51 wrapper_checkpoint.txt
[2025-11-21 11:51:44] -rw------- 1 root root      4910 Nov 21 11:51 pilotlog.txt
[2025-11-21 11:51:44] -rw------- 1 root root   7237698 Nov 21 11:51 log.47523449._000591.job.log.1
[2025-11-21 11:51:44] -rw------- 1 root root       353 Nov 21 11:51 output.list
[2025-11-21 11:51:44] -rw-r--r-- 1 root root       620 Nov 21 11:51 runtime_log
[2025-11-21 11:51:44] -rw------- 1 root root   9267200 Nov 21 11:51 result.tar.gz
[2025-11-21 11:51:44] -rw-r--r-- 1 root root      9019 Nov 21 11:51 runtime_log.err
[2025-11-21 11:51:44] -rw------- 1 root root       657 Nov 21 11:51 emELDmgmGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmtBGKDmseHgom.diag
[2025-11-21 11:51:44] -rw-r--r-- 1 root root     21378 Nov 21 11:51 stderr.txt
[2025-11-21 11:51:44] HITS file was successfully produced:
[2025-11-21 11:51:44] -rw------- 1 root root 932787796 Nov 21 11:50 shared/HITS.pool.root.1
[2025-11-21 11:51:44]  *** Contents of shared directory: ***
[2025-11-21 11:51:44] total 1320180
[2025-11-21 11:51:44] -rw-r--r-- 2 root root    590097 Nov 20 21:44 input.tar.gz
[2025-11-21 11:51:44] -rw-r--r-- 2 root root 409187710 Nov 20 21:44 ATLAS.root_0
[2025-11-21 11:51:44] -rw-r--r-- 2 root root     15847 Nov 20 21:44 start_atlas.sh
[2025-11-21 11:51:44] -rw------- 1 root root 932787796 Nov 21 11:50 HITS.pool.root.1
[2025-11-21 11:51:44] -rw------- 1 root root   9267200 Nov 21 11:51 result.tar.gz
11:51:46 (162201): run_atlas exited; CPU time 134768.084201
11:51:46 (162201): called boinc_finish(0)

</stderr_txt>
]]>

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