Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-24 12:23:51 (9884): vboxwrapper version 26210
2025-11-24 12:23:51 (9884): BOINC client version: 8.2.4
2025-11-24 12:23:51 (9884): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-11-24 12:23:52 (9884): Successfully copied 'init_data.xml' to the shared directory.
2025-11-24 12:23:52 (9884): Create VM. (boinc_fbbcce3a29070d25, slot#1)
2025-11-24 12:23:53 (9884): Setting Memory Size for VM. (4800MB)
2025-11-24 12:23:53 (9884): Setting CPU Count for VM. (8)
2025-11-24 12:23:53 (9884): Setting Chipset Options for VM.
2025-11-24 12:23:53 (9884): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-24 12:23:54 (9884): Setting Boot Options for VM.
2025-11-24 12:23:54 (9884): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-24 12:23:54 (9884): Enabling VM Network Access.
2025-11-24 12:23:55 (9884): Disabling USB Support for VM.
2025-11-24 12:23:55 (9884): Disabling COM Port Support for VM.
2025-11-24 12:23:55 (9884): Disabling LPT Port Support for VM.
2025-11-24 12:23:55 (9884): Disabling Audio Support for VM.
2025-11-24 12:23:56 (9884): Disabling Clipboard Support for VM.
2025-11-24 12:23:56 (9884): Disabling Drag and Drop Support for VM.
2025-11-24 12:23:56 (9884): Adding storage controller(s) to VM.
2025-11-24 12:23:56 (9884): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-24 12:23:57 (9884): Adding VirtualBox Guest Additions to VM.
2025-11-24 12:23:57 (9884): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-24 12:23:57 (9884): forwarding host port 58839 to guest port 80
2025-11-24 12:23:58 (9884): Enabling remote desktop for VM.
2025-11-24 12:23:58 (9884): Enabling shared directory for VM.
2025-11-24 12:23:59 (9884): Starting VM using VBoxManage interface. (boinc_fbbcce3a29070d25, slot#1)
2025-11-24 12:24:04 (9884): Successfully started VM. (PID = '15312')
2025-11-24 12:24:04 (9884): Reporting VM Process ID to BOINC.
2025-11-24 12:24:04 (9884): Guest Log: BIOS: VirtualBox 7.1.4
2025-11-24 12:24:04 (9884): Guest Log: CPUID EDX: 0x178bfbff
2025-11-24 12:24:04 (9884): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-24 12:24:04 (9884): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-24 12:24:04 (9884): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-24 12:24:04 (9884): Detected: Web Application Enabled (http://localhost:58839)
2025-11-24 12:24:04 (9884): Detected: Remote Desktop Enabled (localhost:58840)
2025-11-24 12:24:04 (9884): Preference change detected
2025-11-24 12:24:04 (9884): Setting CPU throttle for VM. (100%)
2025-11-24 12:24:05 (9884): Setting network throttle for VM. (1024KB)
2025-11-24 12:24:05 (9884): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-24 12:24:06 (9884): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-24 12:24:06 (9884): Guest Log: BIOS: Booting from Hard Disk...
2025-11-24 12:24:10 (9884): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-24 12:24:10 (9884): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-24 12:24:10 (9884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-24 12:24:10 (9884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-24 12:24:10 (9884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-24 12:24:10 (9884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-24 12:24:10 (9884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-24 12:24:10 (9884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-24 12:24:10 (9884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-24 12:24:10 (9884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-24 12:24:10 (9884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-24 12:24:10 (9884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-24 12:24:10 (9884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-24 12:24:10 (9884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-24 12:24:10 (9884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-24 12:24:10 (9884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-24 12:24:10 (9884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-24 12:24:10 (9884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-24 12:24:10 (9884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-24 12:24:10 (9884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-24 12:24:10 (9884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-24 12:24:10 (9884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-24 12:24:10 (9884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-24 12:24:10 (9884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-24 12:24:10 (9884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-24 12:24:10 (9884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-24 12:24:10 (9884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-24 12:24:10 (9884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-24 12:24:10 (9884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-24 12:24:10 (9884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-24 12:24:10 (9884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-24 12:24:10 (9884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-24 12:24:15 (9884): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-24 12:24:15 (9884): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-24 12:24:21 (9884): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-24 12:24:21 (9884): Guest Log: 00:00:00.000144 main     Log opened 2025-11-24T12:24:18.356422000Z
2025-11-24 12:24:21 (9884): Guest Log: 00:00:00.000245 main     OS Product: Linux
2025-11-24 12:24:21 (9884): Guest Log: 00:00:00.000275 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-24 12:24:21 (9884): Guest Log: 00:00:00.000298 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-24 12:24:21 (9884): Guest Log: 00:00:00.000320 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-24 12:24:21 (9884): Guest Log: 00:00:00.000321 main     Process ID: 1375
2025-11-24 12:24:21 (9884): Guest Log: 00:00:00.000322 main     Package type: LINUX_64BITS_GENERIC
2025-11-24 12:24:21 (9884): Guest Log: 00:00:00.001129 main     5.2.32 r132073 started. Verbose level = 0
2025-11-24 12:24:21 (9884): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-24 12:24:21 (9884): Guest Log: [INFO] Mounting shared directory
2025-11-24 12:24:21 (9884): Guest Log: [INFO] Checking for init_data.xml
2025-11-24 12:24:31 (9884): Guest Log: 00:00:10.028806 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 012 368 377 000ns (GuestNow=1 764 005 070 729 193 000 ns GuestLast=1 763 987 058 360 816 000 ns fSetTimeLastLoop=true )
2025-11-24 12:24:45 (9884): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-24 12:24:45 (9884): Guest Log: [INFO] Detected branch: prod
2025-11-24 12:24:45 (9884): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-24 12:24:45 (9884): Guest Log: Copying input files
2025-11-24 12:24:47 (9884): Guest Log: Copied input files into RunAtlas.
2025-11-24 12:24:48 (9884): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.3:3128 - will set in /etc/cvmfs/default.local
2025-11-24 12:25:35 (9884): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-24 12:25:36 (9884): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-24 12:25:36 (9884): Guest Log: 2.6.3.0 1661 0 29600 153254 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://192.168.1.3:3128 1
2025-11-24 12:25:36 (9884): Guest Log: copied the webapp to /var/www
2025-11-24 12:25:36 (9884): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-24 12:25:36 (9884): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-24 12:25:36 (9884): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-24 12:25:36 (9884): Guest Log:  *** Starting ATLAS job. (PandaID=6893858422 taskID=47523449) ***
2025-11-24 14:04:07 (9884): Status Report: Elapsed Time: '6000.000000'
2025-11-24 14:04:07 (9884): Status Report: CPU Time: '43789.140625'
2025-11-24 15:44:10 (9884): Status Report: Elapsed Time: '12000.000000'
2025-11-24 15:44:10 (9884): Status Report: CPU Time: '91303.843750'
2025-11-24 17:24:13 (9884): Status Report: Elapsed Time: '18000.000000'
2025-11-24 17:24:13 (9884): Status Report: CPU Time: '138827.718750'
2025-11-24 19:04:16 (9884): Status Report: Elapsed Time: '24000.000000'
2025-11-24 19:04:16 (9884): Status Report: CPU Time: '186306.859375'
2025-11-24 19:18:11 (9884): Guest Log:  *** Job finished ***
2025-11-24 19:18:11 (9884): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-24 19:18:11 (9884): Guest Log: 2025-11-25 00:18:00,048 | INFO     | all workflow threads have been joined
2025-11-24 19:18:11 (9884): Guest Log: 2025-11-25 00:18:00,048 | INFO     | end of generic workflow (traces error code: 0)
2025-11-24 19:18:11 (9884): Guest Log: 2025-11-25 00:18:00,048 | INFO     | traces error code: 0
2025-11-24 19:18:11 (9884): Guest Log: 2025-11-25 00:18:00,049 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-24 19:18:11 (9884): Guest Log: 2025-11-25 00:18:00,409 | INFO     | PID=6118 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-11-24 19:18:11 (9884): Guest Log: 2025-11-25 00:18:00,409 | INFO     | found 0 job(s) in 20 queues
2025-11-24 19:18:11 (9884): Guest Log: 2025-11-25 00:18:00,409 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-24 19:18:11 (9884): Guest Log: 2025-11-25 00:18:00,409 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-24 19:18:11 (9884): Guest Log: 2025-11-25 00:18:00,409 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-24 19:18:11 (9884): Guest Log: 2025-11-25 00:18:00,410 | INFO     | [monitor] control thread has ended
2025-11-24 19:18:11 (9884): Guest Log: 2025-11-25 00:18:00,514 [wrapper] ==== pilot stdout END ====
2025-11-24 19:18:11 (9884): Guest Log: 2025-11-25 00:18:00,521 [wrapper] ==== wrapper stdout RESUME ====
2025-11-24 19:18:11 (9884): Guest Log: 2025-11-25 00:18:00,527 [wrapper] pilotpid: 6118
2025-11-24 19:18:11 (9884): Guest Log: 2025-11-25 00:18:00,534 [wrapper] Pilot exit status: 0
2025-11-24 19:18:11 (9884): Guest Log: 2025-11-25 00:18:00,559 [wrapper] pandaids: 6893858422
2025-11-24 19:18:11 (9884): Guest Log: 2025-11-25 00:18:00,601 [wrapper] cleanup supervisor_pilot  1344 6119
2025-11-24 19:18:11 (9884): Guest Log: 2025-11-25 00:18:00,609 [wrapper] Test setup, not cleaning
2025-11-24 19:18:11 (9884): Guest Log: 2025-11-25 00:18:00,615 [wrapper] apfmon messages muted
2025-11-24 19:18:11 (9884): Guest Log: 2025-11-25 00:18:00,621 [wrapper] ==== wrapper stdout END ====
2025-11-24 19:18:11 (9884): Guest Log: 2025-11-25 00:18:00,627 [wrapper] ==== wrapper stderr END ====
2025-11-24 19:18:11 (9884): Guest Log:  *** Error codes and diagnostics ***
2025-11-24 19:18:11 (9884): Guest Log:     "exeErrorCode": 0,
2025-11-24 19:18:11 (9884): Guest Log:     "exeErrorDiag": "",
2025-11-24 19:18:11 (9884): Guest Log:     "pilotErrorCode": 0,
2025-11-24 19:18:11 (9884): Guest Log:     "pilotErrorDiag": "",
2025-11-24 19:18:11 (9884): Guest Log:  *** Listing of results directory ***
2025-11-24 19:18:11 (9884): Guest Log: total 929532
2025-11-24 19:18:11 (9884): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 20 13:12 pilot3.tar.gz
2025-11-24 19:18:11 (9884): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 20 13:22 queuedata.json
2025-11-24 19:18:11 (9884): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 20 13:22 runpilot2-wrapper.sh
2025-11-24 19:18:11 (9884): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 24 17:24 start_atlas.sh
2025-11-24 19:18:11 (9884): Guest Log: -rwxr-xr-x. 1 atlas atlas    590104 Nov 24 17:24 input.tar.gz
2025-11-24 19:18:11 (9884): Guest Log: -rwxr-xr-x. 1 atlas atlas      9296 Nov 24 17:24 init_data.xml
2025-11-24 19:18:11 (9884): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 24 17:24 EVNT.47493127._000513.pool.root.1 -> /data/./ATLAS.root_0
2025-11-24 19:18:11 (9884): Guest Log: -rw-r--r--. 1 atlas atlas      2786 Nov 24 17:25 pandaJob.out
2025-11-24 19:18:11 (9884): Guest Log: -rw-------. 1 atlas atlas        48 Nov 24 17:25 setup.sh.local
2025-11-24 19:18:11 (9884): Guest Log: -rw-------. 1 atlas atlas    991801 Nov 24 17:26 agis_schedconf.cvmfs.json
2025-11-24 19:18:11 (9884): Guest Log: drwx------. 5 atlas atlas      4096 Nov 24 17:26 pilot3
2025-11-24 19:18:11 (9884): Guest Log: -rw-------. 1 atlas atlas 938054989 Nov 25 00:16 HITS.47523449._005128.pool.root.1
2025-11-24 19:18:11 (9884): Guest Log: -rw-------. 1 atlas atlas      1048 Nov 25 00:17 memory_monitor_summary.json
2025-11-24 19:18:11 (9884): Guest Log: -rw-------. 1 atlas atlas        95 Nov 25 00:17 pilot_heartbeat.json
2025-11-24 19:18:11 (9884): Guest Log: -rw-------. 1 atlas atlas   1516227 Nov 25 00:17 agis_ddmendpoints.agis.ALL.json
2025-11-24 19:18:11 (9884): Guest Log: -rw-------. 1 atlas atlas   1708010 Nov 25 00:17 log.47523449._005128.job.log.tgz.1
2025-11-24 19:18:11 (9884): Guest Log: -rw-------. 1 atlas atlas      8625 Nov 25 00:17 heartbeat.json
2025-11-24 19:18:11 (9884): Guest Log: -rw-------. 1 atlas atlas       744 Nov 25 00:18 pilotlog.txt
2025-11-24 19:18:11 (9884): Guest Log: -rw-------. 1 atlas atlas   3262622 Nov 25 00:18 log.47523449._005128.job.log.1
2025-11-24 19:18:11 (9884): Guest Log: -rw-------. 1 atlas atlas       353 Nov 25 00:18 output.list
2025-11-24 19:18:11 (9884): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 25 00:18 runtime_log
2025-11-24 19:18:11 (9884): Guest Log: -rw-------. 1 atlas atlas   4986880 Nov 25 00:18 result.tar.gz
2025-11-24 19:18:11 (9884): Guest Log: -rw-r--r--. 1 atlas atlas      9222 Nov 25 00:18 runtime_log.err
2025-11-24 19:18:11 (9884): Guest Log: -rw-------. 1 atlas atlas       663 Nov 25 00:18 QFNODmQnJg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm5hGKDmR9dq2m.diag
2025-11-24 19:18:11 (9884): Guest Log: Looking for outputfile HITS.47523449._005128.pool.root.1
2025-11-24 19:18:11 (9884): Guest Log: HITS file was successfully produced
2025-11-24 19:18:11 (9884): Guest Log: -rw-------. 1 atlas atlas 938054989 Nov 25 00:16 /home/atlas/RunAtlas/HITS.47523449._005128.pool.root.1
2025-11-24 19:18:16 (9884): Guest Log: Successfully finished the ATLAS job!
2025-11-24 19:18:16 (9884): Guest Log: Copying the results back to the shared directory!
2025-11-24 19:18:16 (9884): Guest Log:  *** Contents of shared directory: ***
2025-11-24 19:18:16 (9884): Guest Log: total 1323084
2025-11-24 19:18:16 (9884): Guest Log: -rwxrwxrwx. 1 root root 411166731 Nov 24 17:23 ATLAS.root_0
2025-11-24 19:18:16 (9884): Guest Log: -rwxrwxrwx. 1 root root 938054989 Nov 25  2025 HITS.pool.root.1
2025-11-24 19:18:16 (9884): Guest Log: -rwxrwxrwx. 1 root root      9296 Nov 24 17:23 init_data.xml
2025-11-24 19:18:16 (9884): Guest Log: -rwxrwxrwx. 1 root root    590104 Nov 21 03:58 input.tar.gz
2025-11-24 19:18:16 (9884): Guest Log: -rwxrwxrwx. 1 root root   4986880 Nov 25  2025 result.tar.gz
2025-11-24 19:18:16 (9884): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 21 03:58 start_atlas.sh
2025-11-24 19:18:16 (9884): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-24 19:18:16 (9884): VM Completion File Detected.
2025-11-24 19:18:16 (9884): Powering off VM.
2025-11-24 19:18:16 (9884): Successfully stopped VM.
2025-11-24 19:18:16 (9884): Deregistering VM. (boinc_fbbcce3a29070d25, slot#1)
2025-11-24 19:18:16 (9884): Removing network bandwidth throttle group from VM.
2025-11-24 19:18:17 (9884): Removing VM from VirtualBox.
2025-11-24 19:18:22 (9884): called boinc_finish(0)

</stderr_txt>
]]>

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