Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:18:10 (18221): wrapper (7.7.26015): starting
05:18:10 (18221): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 05:18:10] Arguments: --nthreads 8
[2025-11-24 05:18:10] Threads: 8
[2025-11-24 05:18:10] Checking for CVMFS
[2025-11-24 05:18:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 05:18:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 05:18:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 05:18:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 05:18:12] 2.11.2.0 31313 281826 142048 153233 3 13 17713358 25165824 4632 130560 2 127262384 99.859 84501975 3094 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 05:18:12] CVMFS is ok
[2025-11-24 05:18:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 05:18:12] Checking for apptainer binary...
[2025-11-24 05:18:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 05:18:12] Running /usr/bin/apptainer --version
[2025-11-24 05:18:13] apptainer version 1.3.2-1.el7
[2025-11-24 05:18:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 05:18:32] cg-vwn451.simple-grid.lan
[2025-11-24 05:18:32] apptainer works
[2025-11-24 05:18:32] Set ATHENA_PROC_NUMBER=8
[2025-11-24 05:18:32] Set ATHENA_CORE_NUMBER=8
[2025-11-24 05:18:32] Starting ATLAS job with PandaID=6893858948
[2025-11-24 05:18:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/26 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 05:47:17]  *** The last 200 lines of the pilot log: ***
[2025-11-25 05:47:17] 2025-11-25 04:46:31,199 | INFO     | monitor loop #5883: job 0:6893858948 is in state 'finished'
[2025-11-25 05:47:17] 2025-11-25 04:46:31,199 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 05:47:17] 2025-11-25 04:46:33,064 | INFO     | time since job start (87853s) is within the limit (172800.0s)
[2025-11-25 05:47:17] 2025-11-25 04:46:33,705 | INFO     | monitor loop #5884: job 0:6893858948 is in state 'finished'
[2025-11-25 05:47:17] 2025-11-25 04:46:33,705 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 05:47:17] 2025-11-25 04:46:35,082 | INFO     | time since job start (87855s) is within the limit (172800.0s)
[2025-11-25 05:47:17] 2025-11-25 04:46:36,208 | INFO     | monitor loop #5885: job 0:6893858948 is in state 'finished'
[2025-11-25 05:47:17] 2025-11-25 04:46:36,208 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 05:47:17] 2025-11-25 04:46:37,094 | INFO     | time since job start (87857s) is within the limit (172800.0s)
[2025-11-25 05:47:17] 2025-11-25 04:46:38,269 | INFO     | PID=22052 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 05:47:17] 2025-11-25 04:46:38,269 | INFO     | .. there are 9 such processes running
[2025-11-25 05:47:17] 2025-11-25 04:46:38,719 | INFO     | monitor loop #5886: job 0:6893858948 is in state 'finished'
[2025-11-25 05:47:17] 2025-11-25 04:46:38,719 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 05:47:17] 2025-11-25 04:46:39,028 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 05:47:17] 2025-11-25 04:46:39,030 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 05:47:17] 2025-11-25 04:46:39,031 | INFO     | using path: /var/lib/boinc/slots/26/PanDA_Pilot-6893858948/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 05:47:17] 2025-11-25 04:46:39,032 | INFO     | extracted standard info from prmon json
[2025-11-25 05:47:17] 2025-11-25 04:46:39,032 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 05:47:17] 2025-11-25 04:46:39,032 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 05:47:17] 2025-11-25 04:46:39,068 | INFO     | fitting pss+swap vs Time
[2025-11-25 05:47:17] 2025-11-25 04:46:39,079 | INFO     | sum of square deviations: 906746031477.1814
[2025-11-25 05:47:17] 2025-11-25 04:46:39,188 | INFO     | sum of deviations: 3498960627520.195
[2025-11-25 05:47:17] 2025-11-25 04:46:39,188 | INFO     | mean x: 1764002258.6356642
[2025-11-25 05:47:17] 2025-11-25 04:46:39,188 | INFO     | mean y: 2838976.748951049
[2025-11-25 05:47:17] 2025-11-25 04:46:39,188 | INFO     | intersect: -6804110527.918619
[2025-11-25 05:47:17] 2025-11-25 04:46:39,190 | INFO     | chi2: 28.139651004569856
[2025-11-25 05:47:17] 2025-11-25 04:46:39,192 | INFO     | sum of square deviations: 897268404893.2102
[2025-11-25 05:47:17] 2025-11-25 04:46:39,247 | INFO     | sum of deviations: 3968389693207.597
[2025-11-25 05:47:17] 2025-11-25 04:46:39,248 | INFO     | mean x: 1764002106.1396492
[2025-11-25 05:47:17] 2025-11-25 04:46:39,248 | INFO     | mean y: 2846529.1277192985
[2025-11-25 05:47:17] 2025-11-25 04:46:39,248 | INFO     | intersect: -7798885637.775252
[2025-11-25 05:47:17] 2025-11-25 04:46:39,250 | INFO     | chi2: 24.9552700843529
[2025-11-25 05:47:17] 2025-11-25 04:46:39,250 | INFO     | current chi2=24.9552700843529 (change=11.316348307588516 %)
[2025-11-25 05:47:17] 2025-11-25 04:46:39,250 | INFO     | right removable region: 1424
[2025-11-25 05:47:17] 2025-11-25 04:46:39,252 | INFO     | sum of square deviations: 897267414253.2098
[2025-11-25 05:47:17] 2025-11-25 04:46:39,285 | INFO     | time since job start (87859s) is within the limit (172800.0s)
[2025-11-25 05:47:17] 2025-11-25 04:46:39,329 | INFO     | sum of deviations: 2889999099607.116
[2025-11-25 05:47:17] 2025-11-25 04:46:39,330 | INFO     | mean x: 1764002411.1396492
[2025-11-25 05:47:17] 2025-11-25 04:46:39,330 | INFO     | mean y: 2848774.12
[2025-11-25 05:47:17] 2025-11-25 04:46:39,330 | INFO     | intersect: -5678807885.774836
[2025-11-25 05:47:17] 2025-11-25 04:46:39,332 | INFO     | chi2: 23.225139360522057
[2025-11-25 05:47:17] 2025-11-25 04:46:39,332 | INFO     | current chi2=23.225139360522057 (change=17.46472137571886 %)
[2025-11-25 05:47:17] 2025-11-25 04:46:39,332 | INFO     | left removable region: 10
[2025-11-25 05:47:17] 2025-11-25 04:46:39,335 | INFO     | sum of square deviations: 876648624380.3124
[2025-11-25 05:47:17] 2025-11-25 04:46:39,412 | INFO     | sum of deviations: 2915091392055.5767
[2025-11-25 05:47:17] 2025-11-25 04:46:39,412 | INFO     | mean x: 1764002380.6485147
[2025-11-25 05:47:17] 2025-11-25 04:46:39,412 | INFO     | mean y: 2866974.580622348
[2025-11-25 05:47:17] 2025-11-25 04:46:39,412 | INFO     | intersect: -5862913239.275278
[2025-11-25 05:47:17] 2025-11-25 04:46:39,414 | INFO     | chi2: 15.409583201651126
[2025-11-25 05:47:17] 2025-11-25 04:46:39,414 | INFO     | current memory leak: 3.33 B/s (using 1414 data points, chi2=15.41)
[2025-11-25 05:47:17] 2025-11-25 04:46:39,416 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-11-25 05:47:17] 2025-11-25 04:46:39,417 | INFO     | ..............................
[2025-11-25 05:47:17] 2025-11-25 04:46:39,417 | INFO     | . Timing measurements:
[2025-11-25 05:47:17] 2025-11-25 04:46:39,417 | INFO     | . get job = 0 s
[2025-11-25 05:47:17] 2025-11-25 04:46:39,417 | INFO     | . initial setup = 5 s
[2025-11-25 05:47:17] 2025-11-25 04:46:39,417 | INFO     | . payload setup = 172 s
[2025-11-25 05:47:17] 2025-11-25 04:46:39,417 | INFO     | . stage-in = 0 s
[2025-11-25 05:47:17] 2025-11-25 04:46:39,417 | INFO     | . payload execution = 87366 s
[2025-11-25 05:47:17] 2025-11-25 04:46:39,417 | INFO     | . stage-out = 6 s
[2025-11-25 05:47:17] 2025-11-25 04:46:39,417 | INFO     | . log creation = 2 s
[2025-11-25 05:47:17] 2025-11-25 04:46:39,417 | INFO     | ..............................
[2025-11-25 05:47:17] 2025-11-25 04:46:39,549 | INFO     | 
[2025-11-25 05:47:17] 2025-11-25 04:46:39,549 | INFO     | job summary report
[2025-11-25 05:47:17] 2025-11-25 04:46:39,549 | INFO     | --------------------------------------------------
[2025-11-25 05:47:17] 2025-11-25 04:46:39,549 | INFO     | PanDA job id: 6893858948
[2025-11-25 05:47:17] 2025-11-25 04:46:39,550 | INFO     | task id: 47523449
[2025-11-25 05:47:17] 2025-11-25 04:46:39,550 | INFO     | errors: (none)
[2025-11-25 05:47:17] 2025-11-25 04:46:39,550 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 05:47:17] 2025-11-25 04:46:39,550 | INFO     | pilot state: finished 
[2025-11-25 05:47:17] 2025-11-25 04:46:39,550 | INFO     | transexitcode: 0
[2025-11-25 05:47:17] 2025-11-25 04:46:39,550 | INFO     | exeerrorcode: 0
[2025-11-25 05:47:17] 2025-11-25 04:46:39,550 | INFO     | exeerrordiag: 
[2025-11-25 05:47:17] 2025-11-25 04:46:39,550 | INFO     | exitcode: 0
[2025-11-25 05:47:17] 2025-11-25 04:46:39,550 | INFO     | exitmsg: OK
[2025-11-25 05:47:17] 2025-11-25 04:46:39,550 | INFO     | cpuconsumptiontime: 338538 s
[2025-11-25 05:47:17] 2025-11-25 04:46:39,551 | INFO     | nevents: 1000
[2025-11-25 05:47:17] 2025-11-25 04:46:39,551 | INFO     | neventsw: 0
[2025-11-25 05:47:17] 2025-11-25 04:46:39,551 | INFO     | pid: 28631
[2025-11-25 05:47:17] 2025-11-25 04:46:39,551 | INFO     | pgrp: 28631
[2025-11-25 05:47:17] 2025-11-25 04:46:39,551 | INFO     | corecount: 8
[2025-11-25 05:47:17] 2025-11-25 04:46:39,551 | INFO     | event service: False
[2025-11-25 05:47:17] 2025-11-25 04:46:39,551 | INFO     | sizes: {0: 2297979, 1: 2298836, 2: 2298864, 13: 2298864, 23: 2298920, 34: 2298948, 45: 2299104, 55: 2299132, 66: 2299160, 77: 2299188, 88: 2299244, 98: 2299552, 10
[2025-11-25 05:47:17] 2025-11-25 04:46:39,551 | INFO     | --------------------------------------------------
[2025-11-25 05:47:17] 2025-11-25 04:46:39,551 | INFO     | 
[2025-11-25 05:47:17] 2025-11-25 04:46:39,551 | INFO     | executing command: ls -lF /var/lib/boinc/slots/26
[2025-11-25 05:47:17] 2025-11-25 04:46:40,172 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 05:47:17] 2025-11-25 04:46:40,172 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 05:47:17] 2025-11-25 04:46:40,172 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 05:47:17] 2025-11-25 04:46:40,172 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 05:47:17] 2025-11-25 04:46:40,172 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 05:47:17] 2025-11-25 04:46:40,172 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 05:47:17] 2025-11-25 04:46:40,173 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 05:47:17] 2025-11-25 04:46:40,173 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 05:47:17] 2025-11-25 04:46:40,173 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 05:47:17] 2025-11-25 04:46:40,173 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 05:47:17] 2025-11-25 04:46:40,173 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 05:47:17] 2025-11-25 04:46:40,173 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 05:47:17] 2025-11-25 04:46:40,173 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 05:47:17] 2025-11-25 04:46:40,173 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 05:47:17] 2025-11-25 04:46:40,173 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 05:47:17] 2025-11-25 04:46:40,174 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 05:47:17] 2025-11-25 04:46:40,174 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 05:47:17] 2025-11-25 04:46:40,174 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 05:47:17] 2025-11-25 04:46:40,174 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 05:47:17] 2025-11-25 04:46:40,174 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 05:47:17] 2025-11-25 04:46:40,174 | INFO     | job 6893858948 has completed (purged errors)
[2025-11-25 05:47:17] 2025-11-25 04:46:40,175 | INFO     | overall cleanup function is called
[2025-11-25 05:47:17] 2025-11-25 04:46:41,200 | INFO     | --- collectZombieJob: --- 10, [28631]
[2025-11-25 05:47:17] 2025-11-25 04:46:41,200 | INFO     | zombie collector waiting for pid 28631
[2025-11-25 05:47:17] 2025-11-25 04:46:41,200 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 05:47:17] 2025-11-25 04:46:41,201 | INFO     | collected zombie processes
[2025-11-25 05:47:17] 2025-11-25 04:46:41,201 | INFO     | will attempt to kill all subprocesses of pid=28631
[2025-11-25 05:47:17] 2025-11-25 04:46:41,355 | INFO     | process IDs to be killed: [28631] (in reverse order)
[2025-11-25 05:47:17] 2025-11-25 04:46:42,507 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 05:47:17] 2025-11-25 04:46:42,507 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 05:47:17] 2025-11-25 04:46:42,511 | INFO     | did not find any defunct processes belonging to 28631
[2025-11-25 05:47:17] 2025-11-25 04:46:42,514 | INFO     | did not find any defunct processes belonging to 28631
[2025-11-25 05:47:17] 2025-11-25 04:46:42,564 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 05:47:17] 2025-11-25 04:46:42,565 | INFO     | ready for new job
[2025-11-25 05:47:17] 2025-11-25 04:46:42,565 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 05:47:17] 2025-11-25 04:46:42,571 | INFO     | ***************************************
[2025-11-25 05:47:17] 2025-11-25 04:46:42,571 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 05:47:17] 2025-11-25 04:46:42,571 | INFO     | ***************************************
[2025-11-25 05:47:17] 2025-11-25 04:46:42,571 | INFO     | 
[2025-11-25 05:47:17] 2025-11-25 04:46:42,572 | INFO     | pilot is running in a VM
[2025-11-25 05:47:17] 2025-11-25 04:46:42,572 | INFO     | architecture information:
[2025-11-25 05:47:17] 2025-11-25 04:46:42,582 | INFO     | executing command: cat /etc/os-release
[2025-11-25 05:47:17] 2025-11-25 04:46:42,747 | INFO     | cat /etc/os-release:
[2025-11-25 05:47:17] NAME="CentOS Linux"
[2025-11-25 05:47:17] VERSION="7 (Core)"
[2025-11-25 05:47:17] ID="centos"
[2025-11-25 05:47:17] ID_LIKE="rhel fedora"
[2025-11-25 05:47:17] VERSION_ID="7"
[2025-11-25 05:47:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 05:47:17] ANSI_COLOR="0;31"
[2025-11-25 05:47:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 05:47:17] HOME_URL="https://www.centos.org/"
[2025-11-25 05:47:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 05:47:17] 
[2025-11-25 05:47:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 05:47:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 05:47:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 05:47:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 05:47:17] 
[2025-11-25 05:47:17] 2025-11-25 04:46:42,748 | INFO     | ***************************************
[2025-11-25 05:47:17] 2025-11-25 04:46:43,251 | INFO     | executing command: df -mP /var/lib/boinc/slots/26
[2025-11-25 05:47:17] 2025-11-25 04:46:43,482 | INFO     | sufficient remaining disk space (495255027712 B)
[2025-11-25 05:47:17] 2025-11-25 04:46:43,482 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 05:47:17] 2025-11-25 04:46:43,482 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 05:47:17] 2025-11-25 04:46:43,482 | INFO     | update_server=False
[2025-11-25 05:47:17] 2025-11-25 04:46:43,482 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 05:47:17] 2025-11-25 04:46:43,737 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 05:47:17] 2025-11-25 04:46:43,737 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 05:47:17] 2025-11-25 04:46:43,737 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 05:47:17] 2025-11-25 04:46:43,738 | INFO     | will abort loop
[2025-11-25 05:47:17] 2025-11-25 04:46:43,935 | INFO     | all data control threads have been joined
[2025-11-25 05:47:17] 2025-11-25 04:46:43,992 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 05:47:17] 2025-11-25 04:46:44,046 | INFO     | all job control threads have been joined
[2025-11-25 05:47:17] 2025-11-25 04:46:44,488 | INFO     | [job] retrieve thread has finished
[2025-11-25 05:47:17] 2025-11-25 04:46:44,567 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 05:47:17] 2025-11-25 04:46:44,632 | INFO     | all payload control threads have been joined
[2025-11-25 05:47:17] 2025-11-25 04:46:44,633 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 05:47:17] 2025-11-25 04:46:44,697 | INFO     | [payload] failed_post thread has finished
[2025-11-25 05:47:17] 2025-11-25 04:46:44,743 | INFO     | [job] job monitor thread has finished
[2025-11-25 05:47:17] 2025-11-25 04:46:44,783 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 05:47:17] 2025-11-25 04:46:44,846 | INFO     | [data] copytool_in thread has finished
[2025-11-25 05:47:17] 2025-11-25 04:46:44,941 | INFO     | [data] control thread has finished
[2025-11-25 05:47:17] 2025-11-25 04:46:44,996 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 05:47:17] 2025-11-25 04:46:45,052 | INFO     | [job] control thread has finished
[2025-11-25 05:47:17] 2025-11-25 04:46:45,156 | INFO     | [job] validate thread has finished
[2025-11-25 05:47:17] 2025-11-25 04:46:45,231 | INFO     | [payload] validate_post thread has finished
[2025-11-25 05:47:17] 2025-11-25 04:46:45,441 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 05:47:17] 2025-11-25 04:46:45,574 | INFO     | [job] queue monitor thread has finished
[2025-11-25 05:47:17] 2025-11-25 04:46:45,638 | INFO     | [payload] control thread has finished
[2025-11-25 05:47:17] 2025-11-25 04:46:45,999 | INFO     | [data] copytool_out thread has finished
[2025-11-25 05:47:17] 2025-11-25 04:46:46,156 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 05:47:17] 2025-11-25 04:46:50,165 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 05:47:17] 2025-11-25 04:46:53,298 | INFO     | [monitor] cgroup control has ended
[2025-11-25 05:47:17] 2025-11-25 04:46:54,307 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140124469405504)>', '<ExcThread(monitor, started 140123886831360)>']
[2025-11-25 05:47:17] 2025-11-25 04:46:59,333 | INFO     | all workflow threads have been joined
[2025-11-25 05:47:17] 2025-11-25 04:46:59,333 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 05:47:17] 2025-11-25 04:46:59,334 | INFO     | traces error code: 0
[2025-11-25 05:47:17] 2025-11-25 04:46:59,334 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 05:47:17] 2025-11-25 04:47:12,496 | INFO     | PID=22052 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 05:47:17] 2025-11-25 04:47:12,496 | INFO     | .. there are 9 such processes running
[2025-11-25 05:47:17] 2025-11-25 04:47:12,496 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 05:47:17] 2025-11-25 04:47:12,496 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 05:47:17] 2025-11-25 04:47:12,496 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 05:47:17] 2025-11-25 04:47:12,496 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 05:47:17] 2025-11-25 04:47:12,497 | INFO     | [monitor] control thread has ended
[2025-11-25 05:47:17] 2025-11-25 04:47:12,838 [wrapper] ==== pilot stdout END ====
[2025-11-25 05:47:17] 2025-11-25 04:47:12,898 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 05:47:17] 2025-11-25 04:47:12,951 [wrapper] pilotpid: 22052
[2025-11-25 05:47:17] 2025-11-25 04:47:13,021 [wrapper] Pilot exit status: 0
[2025-11-25 05:47:17] 2025-11-25 04:47:13,384 [wrapper] pandaids: 6893858948
[2025-11-25 05:47:17] 2025-11-25 04:47:14,050 [wrapper] cleanup supervisor_pilot  3651 22053
[2025-11-25 05:47:17] 2025-11-25 04:47:14,157 [wrapper] Test setup, not cleaning
[2025-11-25 05:47:17] 2025-11-25 04:47:14,257 [wrapper] apfmon messages muted
[2025-11-25 05:47:17] 2025-11-25 04:47:14,325 [wrapper] ==== wrapper stdout END ====
[2025-11-25 05:47:17] 2025-11-25 04:47:14,376 [wrapper] ==== wrapper stderr END ====
[2025-11-25 05:47:17]  *** Error codes and diagnostics ***
[2025-11-25 05:47:17]     "exeErrorCode": 0,
[2025-11-25 05:47:17]     "exeErrorDiag": "",
[2025-11-25 05:47:17]     "pilotErrorCode": 0,
[2025-11-25 05:47:17]     "pilotErrorDiag": "",
[2025-11-25 05:47:17]  *** Listing of results directory ***
[2025-11-25 05:47:17] total 1339308
[2025-11-25 05:47:17] -rw-r--r--. 1 boinc boinc    576529 Nov 20 14:12 pilot3.tar.gz
[2025-11-25 05:47:17] -rwx------. 1 boinc boinc     36292 Nov 20 14:25 runpilot2-wrapper.sh
[2025-11-25 05:47:17] -rw-r--r--. 1 boinc boinc      5112 Nov 20 14:25 queuedata.json
[2025-11-25 05:47:17] -rw-r--r--. 1 boinc boinc       100 Nov 24 05:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 05:47:17] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 05:18 run_atlas
[2025-11-25 05:47:17] -rw-r--r--. 1 boinc boinc       105 Nov 24 05:18 job.xml
[2025-11-25 05:47:17] -rw-r--r--. 1 boinc boinc      6393 Nov 24 05:18 init_data.xml
[2025-11-25 05:47:17] -rw-r--r--. 2 boinc boinc 411884369 Nov 24 05:18 EVNT.47493127._000520.pool.root.1
[2025-11-25 05:47:17] -rw-r--r--. 2 boinc boinc     15847 Nov 24 05:18 start_atlas.sh
[2025-11-25 05:47:17] drwxrwx--x. 2 boinc boinc        68 Nov 24 05:18 shared
[2025-11-25 05:47:17] -rw-r--r--. 2 boinc boinc    590096 Nov 24 05:18 input.tar.gz
[2025-11-25 05:47:17] -rw-r--r--. 1 boinc boinc         0 Nov 24 05:18 boinc_lockfile
[2025-11-25 05:47:17] -rw-r--r--. 1 boinc boinc      2786 Nov 24 05:18 pandaJob.out
[2025-11-25 05:47:17] -rw-------. 1 boinc boinc    989786 Nov 24 05:22 agis_schedconf.cvmfs.json
[2025-11-25 05:47:17] drwx------. 5 boinc boinc      4096 Nov 24 05:22 pilot3
[2025-11-25 05:47:17] -rw-r--r--. 1 boinc boinc       533 Nov 25 05:21 boinc_task_state.xml
[2025-11-25 05:47:17] -rw-------. 1 boinc boinc 927261255 Nov 25 05:43 HITS.47523449._005199.pool.root.1
[2025-11-25 05:47:17] -rw-------. 1 boinc boinc      1029 Nov 25 05:44 memory_monitor_summary.json
[2025-11-25 05:47:17] -rw-------. 1 boinc boinc   1516227 Nov 25 05:44 agis_ddmendpoints.agis.ALL.json
[2025-11-25 05:47:17] -rw-------. 1 boinc boinc   2515992 Nov 25 05:44 log.47523449._005199.job.log.tgz.1
[2025-11-25 05:47:17] -rw-------. 1 boinc boinc        95 Nov 25 05:46 pilot_heartbeat.json
[2025-11-25 05:47:17] -rw-------. 1 boinc boinc      8635 Nov 25 05:46 heartbeat.json
[2025-11-25 05:47:17] -rw-r--r--. 1 boinc boinc        29 Nov 25 05:46 wrapper_checkpoint.txt
[2025-11-25 05:47:17] -rw-r--r--. 1 boinc boinc      8192 Nov 25 05:46 boinc_mmap_file
[2025-11-25 05:47:17] -rw-------. 1 boinc boinc       820 Nov 25 05:47 pilotlog.txt
[2025-11-25 05:47:17] -rw-------. 1 boinc boinc  11683148 Nov 25 05:47 log.47523449._005199.job.log.1
[2025-11-25 05:47:17] -rw-------. 1 boinc boinc       353 Nov 25 05:47 output.list
[2025-11-25 05:47:17] -rw-r--r--. 1 boinc boinc       620 Nov 25 05:47 runtime_log
[2025-11-25 05:47:17] -rw-------. 1 boinc boinc  14223360 Nov 25 05:47 result.tar.gz
[2025-11-25 05:47:17] -rw-------. 1 boinc boinc       662 Nov 25 05:47 VEOLDm4pJg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmVvHKDmPc3jSn.diag
[2025-11-25 05:47:17] -rw-r--r--. 1 boinc boinc      8833 Nov 25 05:47 runtime_log.err
[2025-11-25 05:47:17] -rw-r--r--. 1 boinc boinc     21485 Nov 25 05:47 stderr.txt
[2025-11-25 05:47:17] HITS file was successfully produced:
[2025-11-25 05:47:17] -rw-------. 1 boinc boinc 927261255 Nov 25 05:43 shared/HITS.pool.root.1
[2025-11-25 05:47:17]  *** Contents of shared directory: ***
[2025-11-25 05:47:17] total 1322252
[2025-11-25 05:47:17] -rw-r--r--. 2 boinc boinc 411884369 Nov 24 05:18 ATLAS.root_0
[2025-11-25 05:47:17] -rw-r--r--. 2 boinc boinc     15847 Nov 24 05:18 start_atlas.sh
[2025-11-25 05:47:17] -rw-r--r--. 2 boinc boinc    590096 Nov 24 05:18 input.tar.gz
[2025-11-25 05:47:17] -rw-------. 1 boinc boinc 927261255 Nov 25 05:43 HITS.pool.root.1
[2025-11-25 05:47:17] -rw-------. 1 boinc boinc  14223360 Nov 25 05:47 result.tar.gz
05:47:18 (18221): run_atlas exited; CPU time 339079.229586
05:47:18 (18221): called boinc_finish(0)

</stderr_txt>
]]>

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