Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:34:21 (31939): wrapper (7.7.26015): starting
01:34:21 (31939): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 01:34:21] Arguments: --nthreads 8
[2025-11-24 01:34:21] Threads: 8
[2025-11-24 01:34:21] Checking for CVMFS
[2025-11-24 01:34:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 01:34:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 01:34:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 01:34:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 01:34:24] 2.11.2.0 30743 78102 112036 153227 0 117 15549770 25165825 4462 130560 2 22746325 99.862 13387191 2012 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 01:34:24] CVMFS is ok
[2025-11-24 01:34:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 01:34:24] Checking for apptainer binary...
[2025-11-24 01:34:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 01:34:24] Running /usr/bin/apptainer --version
[2025-11-24 01:34:24] apptainer version 1.3.2-1.el7
[2025-11-24 01:34:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 01:34:29] cg-vwn349.simple-grid.lan
[2025-11-24 01:34:29] apptainer works
[2025-11-24 01:34:29] Set ATHENA_PROC_NUMBER=8
[2025-11-24 01:34:29] Set ATHENA_CORE_NUMBER=8
[2025-11-24 01:34:29] Starting ATLAS job with PandaID=6893858420
[2025-11-24 01:34:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 21:34:12]  *** The last 200 lines of the pilot log: ***
[2025-11-24 21:34:12] 2025-11-24 20:33:03,968 | INFO     | monitor loop #4850: job 0:6893858420 is in state 'finished'
[2025-11-24 21:34:12] 2025-11-24 20:33:03,968 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 21:34:12] 2025-11-24 20:33:05,783 | INFO     | time since job start (71708s) is within the limit (172800.0s)
[2025-11-24 21:34:12] 2025-11-24 20:33:06,475 | INFO     | monitor loop #4851: job 0:6893858420 is in state 'finished'
[2025-11-24 21:34:12] 2025-11-24 20:33:06,475 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 21:34:12] 2025-11-24 20:33:07,791 | INFO     | time since job start (71710s) is within the limit (172800.0s)
[2025-11-24 21:34:12] 2025-11-24 20:33:08,985 | INFO     | monitor loop #4852: job 0:6893858420 is in state 'finished'
[2025-11-24 21:34:12] 2025-11-24 20:33:08,985 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 21:34:12] 2025-11-24 20:33:09,799 | INFO     | time since job start (71712s) is within the limit (172800.0s)
[2025-11-24 21:34:12] 2025-11-24 20:33:10,975 | INFO     | PID=3385 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 21:34:12] 2025-11-24 20:33:10,975 | INFO     | .. there are 9 such processes running
[2025-11-24 21:34:12] 2025-11-24 20:33:11,490 | INFO     | monitor loop #4853: job 0:6893858420 is in state 'finished'
[2025-11-24 21:34:12] 2025-11-24 20:33:11,490 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 21:34:12] 2025-11-24 20:33:11,976 | INFO     | time since job start (71714s) is within the limit (172800.0s)
[2025-11-24 21:34:12] 2025-11-24 20:33:11,976 | INFO     | 71718s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-24 21:34:12] 2025-11-24 20:33:13,672 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 21:34:12] 2025-11-24 20:33:13,673 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 21:34:12] 2025-11-24 20:33:13,675 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6893858420/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 21:34:12] 2025-11-24 20:33:13,675 | INFO     | extracted standard info from prmon json
[2025-11-24 21:34:12] 2025-11-24 20:33:13,676 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 21:34:12] 2025-11-24 20:33:13,676 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 21:34:12] 2025-11-24 20:33:13,707 | INFO     | fitting pss+swap vs Time
[2025-11-24 21:34:12] 2025-11-24 20:33:13,718 | INFO     | sum of square deviations: 490288718717.9452
[2025-11-24 21:34:12] 2025-11-24 20:33:13,795 | INFO     | sum of deviations: 2852009065383.7007
[2025-11-24 21:34:12] 2025-11-24 20:33:13,795 | INFO     | mean x: 1763980727.006867
[2025-11-24 21:34:12] 2025-11-24 20:33:13,795 | INFO     | mean y: 2817002.4128755364
[2025-11-24 21:34:12] 2025-11-24 20:33:13,795 | INFO     | intersect: -10258257406.439472
[2025-11-24 21:34:12] 2025-11-24 20:33:13,797 | INFO     | chi2: 24.744766019980666
[2025-11-24 21:34:12] 2025-11-24 20:33:13,799 | INFO     | sum of square deviations: 484003340017.85394
[2025-11-24 21:34:12] 2025-11-24 20:33:13,869 | INFO     | sum of deviations: 3240180154319.1665
[2025-11-24 21:34:12] 2025-11-24 20:33:13,869 | INFO     | mean x: 1763980574.5112069
[2025-11-24 21:34:12] 2025-11-24 20:33:13,869 | INFO     | mean y: 2826419.7181034484
[2025-11-24 21:34:12] 2025-11-24 20:33:13,870 | INFO     | intersect: -11806213678.899597
[2025-11-24 21:34:12] 2025-11-24 20:33:13,871 | INFO     | chi2: 21.412634199358237
[2025-11-24 21:34:12] 2025-11-24 20:33:13,871 | INFO     | current chi2=21.412634199358237 (change=13.466006580671772 %)
[2025-11-24 21:34:12] 2025-11-24 20:33:13,871 | INFO     | right removable region: 1159
[2025-11-24 21:34:12] 2025-11-24 20:33:13,873 | INFO     | sum of square deviations: 484002624487.854
[2025-11-24 21:34:12] 2025-11-24 20:33:13,928 | INFO     | sum of deviations: 2363716973365.888
[2025-11-24 21:34:12] 2025-11-24 20:33:13,929 | INFO     | mean x: 1763980879.5112069
[2025-11-24 21:34:12] 2025-11-24 20:33:13,929 | INFO     | mean y: 2828847.9698275863
[2025-11-24 21:34:12] 2025-11-24 20:33:13,929 | INFO     | intersect: -8611900359.347025
[2025-11-24 21:34:12] 2025-11-24 20:33:13,931 | INFO     | chi2: 19.898330130391056
[2025-11-24 21:34:12] 2025-11-24 20:33:13,931 | INFO     | current chi2=19.898330130391056 (change=19.585701015221794 %)
[2025-11-24 21:34:12] 2025-11-24 20:33:13,931 | INFO     | left removable region: 10
[2025-11-24 21:34:12] 2025-11-24 20:33:13,933 | INFO     | sum of square deviations: 470363668209.49884
[2025-11-24 21:34:12] 2025-11-24 20:33:13,981 | INFO     | sum of deviations: 2410144284077.6777
[2025-11-24 21:34:12] 2025-11-24 20:33:13,981 | INFO     | mean x: 1763980849.0208876
[2025-11-24 21:34:12] 2025-11-24 20:33:13,982 | INFO     | mean y: 2851200.138381201
[2025-11-24 21:34:12] 2025-11-24 20:33:13,982 | INFO     | intersect: -9035789851.101562
[2025-11-24 21:34:12] 2025-11-24 20:33:13,983 | INFO     | chi2: 12.009375280478025
[2025-11-24 21:34:12] 2025-11-24 20:33:13,984 | INFO     | current memory leak: 5.12 B/s (using 1149 data points, chi2=12.01)
[2025-11-24 21:34:12] 2025-11-24 20:33:13,985 | INFO     | could have reported an average CPU frequency of 1999 MHz (40 samples)
[2025-11-24 21:34:12] 2025-11-24 20:33:13,985 | INFO     | ..............................
[2025-11-24 21:34:12] 2025-11-24 20:33:13,985 | INFO     | . Timing measurements:
[2025-11-24 21:34:12] 2025-11-24 20:33:13,985 | INFO     | . get job = 0 s
[2025-11-24 21:34:12] 2025-11-24 20:33:13,985 | INFO     | . initial setup = 4 s
[2025-11-24 21:34:12] 2025-11-24 20:33:13,986 | INFO     | . payload setup = 184 s
[2025-11-24 21:34:12] 2025-11-24 20:33:13,986 | INFO     | . stage-in = 0 s
[2025-11-24 21:34:12] 2025-11-24 20:33:13,986 | INFO     | . payload execution = 71218 s
[2025-11-24 21:34:12] 2025-11-24 20:33:13,986 | INFO     | . stage-out = 5 s
[2025-11-24 21:34:12] 2025-11-24 20:33:13,986 | INFO     | . log creation = 2 s
[2025-11-24 21:34:12] 2025-11-24 20:33:13,986 | INFO     | ..............................
[2025-11-24 21:34:12] 2025-11-24 20:33:14,007 | INFO     | time since job start (71717s) is within the limit (172800.0s)
[2025-11-24 21:34:12] 2025-11-24 20:33:14,451 | INFO     | 
[2025-11-24 21:34:12] 2025-11-24 20:33:14,451 | INFO     | job summary report
[2025-11-24 21:34:12] 2025-11-24 20:33:14,451 | INFO     | --------------------------------------------------
[2025-11-24 21:34:12] 2025-11-24 20:33:14,451 | INFO     | PanDA job id: 6893858420
[2025-11-24 21:34:12] 2025-11-24 20:33:14,451 | INFO     | task id: 47523449
[2025-11-24 21:34:12] 2025-11-24 20:33:14,451 | INFO     | errors: (none)
[2025-11-24 21:34:12] 2025-11-24 20:33:14,451 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 21:34:12] 2025-11-24 20:33:14,451 | INFO     | pilot state: finished 
[2025-11-24 21:34:12] 2025-11-24 20:33:14,452 | INFO     | transexitcode: 0
[2025-11-24 21:34:12] 2025-11-24 20:33:14,452 | INFO     | exeerrorcode: 0
[2025-11-24 21:34:12] 2025-11-24 20:33:14,452 | INFO     | exeerrordiag: 
[2025-11-24 21:34:12] 2025-11-24 20:33:14,452 | INFO     | exitcode: 0
[2025-11-24 21:34:12] 2025-11-24 20:33:14,452 | INFO     | exitmsg: OK
[2025-11-24 21:34:12] 2025-11-24 20:33:14,452 | INFO     | cpuconsumptiontime: 336053 s
[2025-11-24 21:34:12] 2025-11-24 20:33:14,452 | INFO     | nevents: 1000
[2025-11-24 21:34:12] 2025-11-24 20:33:14,452 | INFO     | neventsw: 0
[2025-11-24 21:34:12] 2025-11-24 20:33:14,452 | INFO     | pid: 9980
[2025-11-24 21:34:12] 2025-11-24 20:33:14,452 | INFO     | pgrp: 9980
[2025-11-24 21:34:12] 2025-11-24 20:33:14,452 | INFO     | corecount: 8
[2025-11-24 21:34:12] 2025-11-24 20:33:14,453 | INFO     | event service: False
[2025-11-24 21:34:12] 2025-11-24 20:33:14,453 | INFO     | sizes: {0: 2297979, 1: 2298665, 2: 2298864, 13: 2298864, 24: 2298920, 35: 2298948, 45: 2299104, 56: 2299132, 67: 2299160, 78: 2299188, 88: 2299244, 99: 2299842, 71
[2025-11-24 21:34:12] 2025-11-24 20:33:14,453 | INFO     | --------------------------------------------------
[2025-11-24 21:34:12] 2025-11-24 20:33:14,453 | INFO     | 
[2025-11-24 21:34:12] 2025-11-24 20:33:14,453 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-11-24 21:34:12] 2025-11-24 20:33:15,055 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 21:34:12] 2025-11-24 20:33:15,056 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 21:34:12] 2025-11-24 20:33:15,056 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 21:34:12] 2025-11-24 20:33:15,056 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 21:34:12] 2025-11-24 20:33:15,056 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 21:34:12] 2025-11-24 20:33:15,056 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 21:34:12] 2025-11-24 20:33:15,056 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 21:34:12] 2025-11-24 20:33:15,056 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 21:34:12] 2025-11-24 20:33:15,057 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 21:34:12] 2025-11-24 20:33:15,057 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 21:34:12] 2025-11-24 20:33:15,057 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 21:34:12] 2025-11-24 20:33:15,057 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 21:34:12] 2025-11-24 20:33:15,057 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 21:34:12] 2025-11-24 20:33:15,057 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 21:34:12] 2025-11-24 20:33:15,057 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 21:34:12] 2025-11-24 20:33:15,057 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 21:34:12] 2025-11-24 20:33:15,058 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 21:34:12] 2025-11-24 20:33:15,058 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 21:34:12] 2025-11-24 20:33:15,058 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 21:34:12] 2025-11-24 20:33:15,058 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 21:34:12] 2025-11-24 20:33:15,058 | INFO     | job 6893858420 has completed (purged errors)
[2025-11-24 21:34:12] 2025-11-24 20:33:15,058 | INFO     | overall cleanup function is called
[2025-11-24 21:34:12] 2025-11-24 20:33:16,090 | INFO     | --- collectZombieJob: --- 10, [9980]
[2025-11-24 21:34:12] 2025-11-24 20:33:16,090 | INFO     | zombie collector waiting for pid 9980
[2025-11-24 21:34:12] 2025-11-24 20:33:16,090 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 21:34:12] 2025-11-24 20:33:16,090 | INFO     | collected zombie processes
[2025-11-24 21:34:12] 2025-11-24 20:33:16,090 | INFO     | will attempt to kill all subprocesses of pid=9980
[2025-11-24 21:34:12] 2025-11-24 20:33:16,230 | INFO     | process IDs to be killed: [9980] (in reverse order)
[2025-11-24 21:34:12] 2025-11-24 20:33:17,076 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 21:34:12] 2025-11-24 20:33:17,077 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 21:34:12] 2025-11-24 20:33:17,080 | INFO     | did not find any defunct processes belonging to 9980
[2025-11-24 21:34:12] 2025-11-24 20:33:17,083 | INFO     | did not find any defunct processes belonging to 9980
[2025-11-24 21:34:12] 2025-11-24 20:33:17,144 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 21:34:12] 2025-11-24 20:33:17,144 | INFO     | ready for new job
[2025-11-24 21:34:12] 2025-11-24 20:33:17,144 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 21:34:12] 2025-11-24 20:33:17,149 | INFO     | ***************************************
[2025-11-24 21:34:12] 2025-11-24 20:33:17,149 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 21:34:12] 2025-11-24 20:33:17,149 | INFO     | ***************************************
[2025-11-24 21:34:12] 2025-11-24 20:33:17,149 | INFO     | 
[2025-11-24 21:34:12] 2025-11-24 20:33:17,150 | INFO     | pilot is running in a VM
[2025-11-24 21:34:12] 2025-11-24 20:33:17,150 | INFO     | architecture information:
[2025-11-24 21:34:12] 2025-11-24 20:33:17,164 | INFO     | executing command: cat /etc/os-release
[2025-11-24 21:34:12] 2025-11-24 20:33:17,339 | INFO     | cat /etc/os-release:
[2025-11-24 21:34:12] NAME="CentOS Linux"
[2025-11-24 21:34:12] VERSION="7 (Core)"
[2025-11-24 21:34:12] ID="centos"
[2025-11-24 21:34:12] ID_LIKE="rhel fedora"
[2025-11-24 21:34:12] VERSION_ID="7"
[2025-11-24 21:34:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 21:34:12] ANSI_COLOR="0;31"
[2025-11-24 21:34:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 21:34:12] HOME_URL="https://www.centos.org/"
[2025-11-24 21:34:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 21:34:12] 
[2025-11-24 21:34:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 21:34:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 21:34:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 21:34:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 21:34:12] 
[2025-11-24 21:34:12] 2025-11-24 20:33:17,339 | INFO     | ***************************************
[2025-11-24 21:34:12] 2025-11-24 20:33:17,843 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-11-24 21:34:12] 2025-11-24 20:33:18,098 | INFO     | sufficient remaining disk space (495376662528 B)
[2025-11-24 21:34:12] 2025-11-24 20:33:18,099 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 21:34:12] 2025-11-24 20:33:18,099 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 21:34:12] 2025-11-24 20:33:18,099 | INFO     | update_server=False
[2025-11-24 21:34:12] 2025-11-24 20:33:18,099 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 21:34:12] 2025-11-24 20:33:18,099 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 21:34:12] 2025-11-24 20:33:18,099 | INFO     | aborting loop
[2025-11-24 21:34:12] 2025-11-24 20:33:18,313 | INFO     | all payload control threads have been joined
[2025-11-24 21:34:12] 2025-11-24 20:33:18,360 | INFO     | all data control threads have been joined
[2025-11-24 21:34:12] 2025-11-24 20:33:18,559 | INFO     | all job control threads have been joined
[2025-11-24 21:34:12] 2025-11-24 20:33:18,865 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 21:34:12] 2025-11-24 20:33:19,105 | INFO     | [job] retrieve thread has finished
[2025-11-24 21:34:12] 2025-11-24 20:33:19,108 | INFO     | [job] job monitor thread has finished
[2025-11-24 21:34:12] 2025-11-24 20:33:19,120 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 21:34:12] 2025-11-24 20:33:19,136 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 21:34:12] 2025-11-24 20:33:19,142 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 21:34:12] 2025-11-24 20:33:19,250 | INFO     | [data] copytool_in thread has finished
[2025-11-24 21:34:12] 2025-11-24 20:33:19,274 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 21:34:12] 2025-11-24 20:33:19,287 | INFO     | [payload] failed_post thread has finished
[2025-11-24 21:34:12] 2025-11-24 20:33:19,319 | INFO     | [payload] control thread has finished
[2025-11-24 21:34:12] 2025-11-24 20:33:19,342 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 21:34:12] 2025-11-24 20:33:19,366 | INFO     | [data] control thread has finished
[2025-11-24 21:34:12] 2025-11-24 20:33:19,427 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 21:34:12] 2025-11-24 20:33:19,564 | INFO     | [job] control thread has finished
[2025-11-24 21:34:12] 2025-11-24 20:33:19,964 | INFO     | [job] validate thread has finished
[2025-11-24 21:34:12] 2025-11-24 20:33:20,142 | INFO     | [job] queue monitor thread has finished
[2025-11-24 21:34:12] 2025-11-24 20:33:20,698 | INFO     | [payload] validate_post thread has finished
[2025-11-24 21:34:12] 2025-11-24 20:33:20,872 | INFO     | [data] copytool_out thread has finished
[2025-11-24 21:34:12] 2025-11-24 20:33:23,436 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 21:34:12] 2025-11-24 20:33:47,221 | INFO     | PID=3385 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 21:34:12] 2025-11-24 20:33:47,221 | INFO     | .. there are 9 such processes running
[2025-11-24 21:34:12] 2025-11-24 20:33:47,221 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 21:34:12] 2025-11-24 20:33:47,221 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 21:34:12] 2025-11-24 20:33:47,222 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 21:34:12] 2025-11-24 20:34:01,043 | INFO     | [monitor] cgroup control has ended
[2025-11-24 21:34:12] 2025-11-24 20:34:02,734 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140464742246208)>', '<ExcThread(monitor, started 140463986161408)>']
[2025-11-24 21:34:12] 2025-11-24 20:34:03,318 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 21:34:12] 2025-11-24 20:34:03,318 | INFO     | [monitor] control thread has ended
[2025-11-24 21:34:12] 2025-11-24 20:34:07,760 | INFO     | all workflow threads have been joined
[2025-11-24 21:34:12] 2025-11-24 20:34:07,760 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 21:34:12] 2025-11-24 20:34:07,760 | INFO     | traces error code: 0
[2025-11-24 21:34:12] 2025-11-24 20:34:07,760 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 21:34:12] 2025-11-24 20:34:08,136 [wrapper] ==== pilot stdout END ====
[2025-11-24 21:34:12] 2025-11-24 20:34:08,178 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 21:34:12] 2025-11-24 20:34:08,222 [wrapper] pilotpid: 3385
[2025-11-24 21:34:12] 2025-11-24 20:34:08,265 [wrapper] Pilot exit status: 0
[2025-11-24 21:34:12] 2025-11-24 20:34:08,629 [wrapper] pandaids: 6893858420
[2025-11-24 21:34:12] 2025-11-24 20:34:09,446 [wrapper] cleanup supervisor_pilot 30161 3386
[2025-11-24 21:34:12] 2025-11-24 20:34:09,529 [wrapper] Test setup, not cleaning
[2025-11-24 21:34:12] 2025-11-24 20:34:09,653 [wrapper] apfmon messages muted
[2025-11-24 21:34:12] 2025-11-24 20:34:09,770 [wrapper] ==== wrapper stdout END ====
[2025-11-24 21:34:12] 2025-11-24 20:34:09,873 [wrapper] ==== wrapper stderr END ====
[2025-11-24 21:34:12]  *** Error codes and diagnostics ***
[2025-11-24 21:34:12]     "exeErrorCode": 0,
[2025-11-24 21:34:12]     "exeErrorDiag": "",
[2025-11-24 21:34:12]     "pilotErrorCode": 0,
[2025-11-24 21:34:12]     "pilotErrorDiag": "",
[2025-11-24 21:34:12]  *** Listing of results directory ***
[2025-11-24 21:34:12] total 1324712
[2025-11-24 21:34:12] -rw-r--r--. 1 boinc boinc    576529 Nov 20 14:12 pilot3.tar.gz
[2025-11-24 21:34:12] -rw-r--r--. 1 boinc boinc      5112 Nov 20 14:22 queuedata.json
[2025-11-24 21:34:12] -rwx------. 1 boinc boinc     36292 Nov 20 14:22 runpilot2-wrapper.sh
[2025-11-24 21:34:12] -rw-r--r--. 1 boinc boinc       100 Nov 24 01:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 21:34:12] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 01:34 run_atlas
[2025-11-24 21:34:12] -rw-r--r--. 1 boinc boinc       105 Nov 24 01:34 job.xml
[2025-11-24 21:34:12] -rw-r--r--. 1 boinc boinc      6393 Nov 24 01:34 init_data.xml
[2025-11-24 21:34:12] -rw-r--r--. 2 boinc boinc 411166731 Nov 24 01:34 EVNT.47493127._000513.pool.root.1
[2025-11-24 21:34:12] -rw-r--r--. 2 boinc boinc     15847 Nov 24 01:34 start_atlas.sh
[2025-11-24 21:34:12] drwxrwx--x. 2 boinc boinc        68 Nov 24 01:34 shared
[2025-11-24 21:34:12] -rw-r--r--. 2 boinc boinc    590104 Nov 24 01:34 input.tar.gz
[2025-11-24 21:34:12] -rw-r--r--. 1 boinc boinc         0 Nov 24 01:34 boinc_lockfile
[2025-11-24 21:34:12] -rw-r--r--. 1 boinc boinc      2786 Nov 24 01:34 pandaJob.out
[2025-11-24 21:34:12] -rw-------. 1 boinc boinc    989786 Nov 24 01:37 agis_schedconf.cvmfs.json
[2025-11-24 21:34:12] drwx------. 5 boinc boinc      4096 Nov 24 01:37 pilot3
[2025-11-24 21:34:12] -rw-r--r--. 1 boinc boinc       533 Nov 24 21:10 boinc_task_state.xml
[2025-11-24 21:34:12] -rw-------. 1 boinc boinc 917655065 Nov 24 21:30 HITS.47523449._005126.pool.root.1
[2025-11-24 21:34:12] -rw-------. 1 boinc boinc      1035 Nov 24 21:31 memory_monitor_summary.json
[2025-11-24 21:34:12] -rw-------. 1 boinc boinc   1516227 Nov 24 21:31 agis_ddmendpoints.agis.ALL.json
[2025-11-24 21:34:12] -rw-------. 1 boinc boinc   2314338 Nov 24 21:31 log.47523449._005126.job.log.tgz.1
[2025-11-24 21:34:12] -rw-------. 1 boinc boinc        95 Nov 24 21:33 pilot_heartbeat.json
[2025-11-24 21:34:12] -rw-------. 1 boinc boinc      8627 Nov 24 21:33 heartbeat.json
[2025-11-24 21:34:12] -rw-r--r--. 1 boinc boinc      8192 Nov 24 21:34 boinc_mmap_file
[2025-11-24 21:34:12] -rw-r--r--. 1 boinc boinc        29 Nov 24 21:34 wrapper_checkpoint.txt
[2025-11-24 21:34:12] -rw-------. 1 boinc boinc      4884 Nov 24 21:34 pilotlog.txt
[2025-11-24 21:34:12] -rw-------. 1 boinc boinc   9573014 Nov 24 21:34 log.47523449._005126.job.log.1
[2025-11-24 21:34:12] -rw-------. 1 boinc boinc       353 Nov 24 21:34 output.list
[2025-11-24 21:34:12] -rw-r--r--. 1 boinc boinc       620 Nov 24 21:34 runtime_log
[2025-11-24 21:34:12] -rw-------. 1 boinc boinc  11909120 Nov 24 21:34 result.tar.gz
[2025-11-24 21:34:12] -rw-r--r--. 1 boinc boinc      8833 Nov 24 21:34 runtime_log.err
[2025-11-24 21:34:12] -rw-------. 1 boinc boinc       661 Nov 24 21:34 5gJODmQnJg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm3hGKDmlLLbnn.diag
[2025-11-24 21:34:12] -rw-r--r--. 1 boinc boinc     21521 Nov 24 21:34 stderr.txt
[2025-11-24 21:34:12] HITS file was successfully produced:
[2025-11-24 21:34:12] -rw-------. 1 boinc boinc 917655065 Nov 24 21:30 shared/HITS.pool.root.1
[2025-11-24 21:34:12]  *** Contents of shared directory: ***
[2025-11-24 21:34:12] total 1309908
[2025-11-24 21:34:12] -rw-r--r--. 2 boinc boinc 411166731 Nov 24 01:34 ATLAS.root_0
[2025-11-24 21:34:12] -rw-r--r--. 2 boinc boinc     15847 Nov 24 01:34 start_atlas.sh
[2025-11-24 21:34:12] -rw-r--r--. 2 boinc boinc    590104 Nov 24 01:34 input.tar.gz
[2025-11-24 21:34:12] -rw-------. 1 boinc boinc 917655065 Nov 24 21:30 HITS.pool.root.1
[2025-11-24 21:34:12] -rw-------. 1 boinc boinc  11909120 Nov 24 21:34 result.tar.gz
21:34:14 (31939): run_atlas exited; CPU time 336358.452634
21:34:14 (31939): called boinc_finish(0)

</stderr_txt>
]]>

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