Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:04 (1521388): wrapper (7.7.26015): starting
00:03:04 (1521388): wrapper: running run_atlas (--nthreads 9)
[2025-11-21 00:03:04] Arguments: --nthreads 9
[2025-11-21 00:03:04] Threads: 9
[2025-11-21 00:03:04] Checking for CVMFS
[2025-11-21 00:03:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 00:03:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 00:03:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 00:03:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 00:03:06] 2.13.2.0 5784 25231 170668 153108 1 142 31845293 39288832 4999 16776704 0 12907462 99.668 9693357 33590 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 00:03:06] CVMFS is ok
[2025-11-21 00:03:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 00:03:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 00:03:06] Further information can be found at the LHC@home message board.
[2025-11-21 00:03:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 00:03:06] Checking for apptainer binary...
[2025-11-21 00:03:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 00:03:06] Running /usr/bin/apptainer --version
[2025-11-21 00:03:06] apptainer version 1.4.4-1.el9
[2025-11-21 00:03:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 00:03:06] c-210-12.aglt2.org
[2025-11-21 00:03:06] apptainer works
[2025-11-21 00:03:06] Set ATHENA_PROC_NUMBER=9
[2025-11-21 00:03:06] Set ATHENA_CORE_NUMBER=9
[2025-11-21 00:03:07] Starting ATLAS job with PandaID=6893858419
[2025-11-21 00:03:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 16:08:49]  *** The last 200 lines of the pilot log: ***
[2025-11-21 16:08:49] 2025-11-21 21:08:05,231 | INFO     | total number of processed events: 1000 (read)
[2025-11-21 16:08:49] 2025-11-21 21:08:05,283 | INFO     | executing command: lscpu
[2025-11-21 16:08:49] 2025-11-21 21:08:05,378 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-21 16:08:49] 2025-11-21 21:08:05,600 | INFO     | time since job start (57855s) is within the limit (172800.0s)
[2025-11-21 16:08:49] 2025-11-21 21:08:07,115 | INFO     | monitor loop #3986: job 0:6893858419 is in state 'finished'
[2025-11-21 16:08:49] 2025-11-21 21:08:07,115 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 16:08:49] 2025-11-21 21:08:07,607 | INFO     | time since job start (57857s) is within the limit (172800.0s)
[2025-11-21 16:08:49] 2025-11-21 21:08:09,612 | INFO     | time since job start (57859s) is within the limit (172800.0s)
[2025-11-21 16:08:49] 2025-11-21 21:08:09,620 | INFO     | monitor loop #3987: job 0:6893858419 is in state 'finished'
[2025-11-21 16:08:49] 2025-11-21 21:08:09,620 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 16:08:49] 2025-11-21 21:08:11,619 | INFO     | time since job start (57861s) is within the limit (172800.0s)
[2025-11-21 16:08:49] 2025-11-21 21:08:12,125 | INFO     | monitor loop #3988: job 0:6893858419 is in state 'finished'
[2025-11-21 16:08:49] 2025-11-21 21:08:12,125 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 16:08:49] 2025-11-21 21:08:13,626 | INFO     | time since job start (57863s) is within the limit (172800.0s)
[2025-11-21 16:08:49] 2025-11-21 21:08:14,630 | INFO     | monitor loop #3989: job 0:6893858419 is in state 'finished'
[2025-11-21 16:08:49] 2025-11-21 21:08:14,630 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 16:08:49] 2025-11-21 21:08:15,402 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 16:08:49] 2025-11-21 21:08:15,408 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.2105750000005
[2025-11-21 16:08:49] 2025-11-21 21:08:15,415 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6893858419/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 16:08:49] 2025-11-21 21:08:15,416 | INFO     | extracted standard info from prmon json
[2025-11-21 16:08:49] 2025-11-21 21:08:15,416 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 16:08:49] 2025-11-21 21:08:15,416 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 16:08:49] 2025-11-21 21:08:15,434 | INFO     | fitting pss+swap vs Time
[2025-11-21 16:08:49] 2025-11-21 21:08:15,436 | INFO     | sum of square deviations: 263361905218.7187
[2025-11-21 16:08:49] 2025-11-21 21:08:15,459 | INFO     | sum of deviations: 1799095658863.5735
[2025-11-21 16:08:49] 2025-11-21 21:08:15,459 | INFO     | mean x: 1763730391.5058079
[2025-11-21 16:08:49] 2025-11-21 21:08:15,459 | INFO     | mean y: 3061662.8046462513
[2025-11-21 16:08:49] 2025-11-21 21:08:15,459 | INFO     | intersect: -12045452673.878235
[2025-11-21 16:08:49] 2025-11-21 21:08:15,461 | INFO     | chi2: 14.846600704043395
[2025-11-21 16:08:49] 2025-11-21 21:08:15,462 | INFO     | sum of square deviations: 259213043734.82056
[2025-11-21 16:08:49] 2025-11-21 21:08:15,484 | INFO     | sum of deviations: 2153156825683.5022
[2025-11-21 16:08:49] 2025-11-21 21:08:15,485 | INFO     | mean x: 1763730239.0138004
[2025-11-21 16:08:49] 2025-11-21 21:08:15,485 | INFO     | mean y: 3074675.192144374
[2025-11-21 16:08:49] 2025-11-21 21:08:15,485 | INFO     | intersect: -14647375580.24314
[2025-11-21 16:08:49] 2025-11-21 21:08:15,486 | INFO     | chi2: 11.22120593153064
[2025-11-21 16:08:49] 2025-11-21 21:08:15,487 | INFO     | current chi2=11.22120593153064 (change=24.419022541135607 %)
[2025-11-21 16:08:49] 2025-11-21 21:08:15,487 | INFO     | right removable region: 941
[2025-11-21 16:08:49] 2025-11-21 21:08:15,488 | INFO     | sum of square deviations: 259212173874.8205
[2025-11-21 16:08:49] 2025-11-21 21:08:15,510 | INFO     | sum of deviations: 1428674875566.18
[2025-11-21 16:08:49] 2025-11-21 21:08:15,511 | INFO     | mean x: 1763730544.0138004
[2025-11-21 16:08:49] 2025-11-21 21:08:15,511 | INFO     | mean y: 3075270.524416136
[2025-11-21 16:08:49] 2025-11-21 21:08:15,511 | INFO     | intersect: -9717909194.958502
[2025-11-21 16:08:49] 2025-11-21 21:08:15,512 | INFO     | chi2: 11.445734912616373
[2025-11-21 16:08:49] 2025-11-21 21:08:15,513 | INFO     | current chi2=11.445734912616373 (change=22.906696685799687 %)
[2025-11-21 16:08:49] 2025-11-21 21:08:15,513 | INFO     | left removable region: 10
[2025-11-21 16:08:49] 2025-11-21 21:08:15,514 | INFO     | sum of square deviations: 250237937458.05173
[2025-11-21 16:08:49] 2025-11-21 21:08:15,536 | INFO     | sum of deviations: 1735566821218.2554
[2025-11-21 16:08:49] 2025-11-21 21:08:15,536 | INFO     | mean x: 1763730513.52739
[2025-11-21 16:08:49] 2025-11-21 21:08:15,536 | INFO     | mean y: 3095772.4801288936
[2025-11-21 16:08:49] 2025-11-21 21:08:15,536 | INFO     | intersect: -12229550451.921843
[2025-11-21 16:08:49] 2025-11-21 21:08:15,538 | INFO     | chi2: 6.6819785892884145
[2025-11-21 16:08:49] 2025-11-21 21:08:15,538 | INFO     | current memory leak: 6.94 B/s (using 931 data points, chi2=6.68)
[2025-11-21 16:08:49] 2025-11-21 21:08:15,539 | INFO     | could have reported an average CPU frequency of 2600 MHz (35 samples)
[2025-11-21 16:08:49] 2025-11-21 21:08:15,539 | INFO     | ..............................
[2025-11-21 16:08:49] 2025-11-21 21:08:15,539 | INFO     | . Timing measurements:
[2025-11-21 16:08:49] 2025-11-21 21:08:15,539 | INFO     | . get job = 0 s
[2025-11-21 16:08:49] 2025-11-21 21:08:15,540 | INFO     | . initial setup = 3 s
[2025-11-21 16:08:49] 2025-11-21 21:08:15,540 | INFO     | . payload setup = 38 s
[2025-11-21 16:08:49] 2025-11-21 21:08:15,540 | INFO     | . stage-in = 0 s
[2025-11-21 16:08:49] 2025-11-21 21:08:15,540 | INFO     | . payload execution = 57756 s
[2025-11-21 16:08:49] 2025-11-21 21:08:15,540 | INFO     | . stage-out = 4 s
[2025-11-21 16:08:49] 2025-11-21 21:08:15,540 | INFO     | . log creation = 1 s
[2025-11-21 16:08:49] 2025-11-21 21:08:15,540 | INFO     | ..............................
[2025-11-21 16:08:49] 2025-11-21 21:08:15,639 | INFO     | time since job start (57865s) is within the limit (172800.0s)
[2025-11-21 16:08:49] 2025-11-21 21:08:15,646 | INFO     | 
[2025-11-21 16:08:49] 2025-11-21 21:08:15,647 | INFO     | job summary report
[2025-11-21 16:08:49] 2025-11-21 21:08:15,647 | INFO     | --------------------------------------------------
[2025-11-21 16:08:49] 2025-11-21 21:08:15,647 | INFO     | PanDA job id: 6893858419
[2025-11-21 16:08:49] 2025-11-21 21:08:15,647 | INFO     | task id: 47523449
[2025-11-21 16:08:49] 2025-11-21 21:08:15,647 | INFO     | errors: (none)
[2025-11-21 16:08:49] 2025-11-21 21:08:15,647 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 16:08:49] 2025-11-21 21:08:15,647 | INFO     | pilot state: finished 
[2025-11-21 16:08:49] 2025-11-21 21:08:15,647 | INFO     | transexitcode: 0
[2025-11-21 16:08:49] 2025-11-21 21:08:15,648 | INFO     | exeerrorcode: 0
[2025-11-21 16:08:49] 2025-11-21 21:08:15,648 | INFO     | exeerrordiag: 
[2025-11-21 16:08:49] 2025-11-21 21:08:15,648 | INFO     | exitcode: 0
[2025-11-21 16:08:49] 2025-11-21 21:08:15,648 | INFO     | exitmsg: OK
[2025-11-21 16:08:49] 2025-11-21 21:08:15,648 | INFO     | cpuconsumptiontime: 294314 s
[2025-11-21 16:08:49] 2025-11-21 21:08:15,648 | INFO     | nevents: 1000
[2025-11-21 16:08:49] 2025-11-21 21:08:15,648 | INFO     | neventsw: 0
[2025-11-21 16:08:49] 2025-11-21 21:08:15,648 | INFO     | pid: 1534677
[2025-11-21 16:08:49] 2025-11-21 21:08:15,648 | INFO     | pgrp: 1534677
[2025-11-21 16:08:49] 2025-11-21 21:08:15,648 | INFO     | corecount: 9
[2025-11-21 16:08:49] 2025-11-21 21:08:15,649 | INFO     | event service: False
[2025-11-21 16:08:49] 2025-11-21 21:08:15,649 | INFO     | sizes: {0: 2298580, 1: 2298664, 2: 2298863, 13: 2298863, 21: 2299181, 24: 2299209, 57795: 2350920, 57796: 2350919, 57800: 2359969, 57804: 2360025, 57816: 2360271}
[2025-11-21 16:08:49] 2025-11-21 21:08:15,649 | INFO     | --------------------------------------------------
[2025-11-21 16:08:49] 2025-11-21 21:08:15,649 | INFO     | 
[2025-11-21 16:08:49] 2025-11-21 21:08:15,649 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-21 16:08:49] 2025-11-21 21:08:15,670 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 16:08:49] 2025-11-21 21:08:15,671 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 16:08:49] 2025-11-21 21:08:15,671 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 16:08:49] 2025-11-21 21:08:15,671 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 16:08:49] 2025-11-21 21:08:15,671 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 16:08:49] 2025-11-21 21:08:15,671 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 16:08:49] 2025-11-21 21:08:15,671 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 16:08:49] 2025-11-21 21:08:15,672 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 16:08:49] 2025-11-21 21:08:15,672 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 16:08:49] 2025-11-21 21:08:15,672 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 16:08:49] 2025-11-21 21:08:15,672 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 16:08:49] 2025-11-21 21:08:15,672 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 16:08:49] 2025-11-21 21:08:15,673 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 16:08:49] 2025-11-21 21:08:15,673 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 16:08:49] 2025-11-21 21:08:15,673 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 16:08:49] 2025-11-21 21:08:15,673 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 16:08:49] 2025-11-21 21:08:15,673 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 16:08:49] 2025-11-21 21:08:15,673 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 16:08:49] 2025-11-21 21:08:15,673 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 16:08:49] 2025-11-21 21:08:15,673 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 16:08:49] 2025-11-21 21:08:15,674 | INFO     | job 6893858419 has completed (purged errors)
[2025-11-21 16:08:49] 2025-11-21 21:08:15,674 | INFO     | overall cleanup function is called
[2025-11-21 16:08:49] 2025-11-21 21:08:16,692 | INFO     | --- collectZombieJob: --- 10, [1534677]
[2025-11-21 16:08:49] 2025-11-21 21:08:16,692 | INFO     | zombie collector waiting for pid 1534677
[2025-11-21 16:08:49] 2025-11-21 21:08:16,692 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 16:08:49] 2025-11-21 21:08:16,692 | INFO     | collected zombie processes
[2025-11-21 16:08:49] 2025-11-21 21:08:16,693 | INFO     | will attempt to kill all subprocesses of pid=1534677
[2025-11-21 16:08:49] 2025-11-21 21:08:17,245 | INFO     | process IDs to be killed: [1534677] (in reverse order)
[2025-11-21 16:08:49] 2025-11-21 21:08:17,430 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 16:08:49] 2025-11-21 21:08:17,431 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 16:08:49] 2025-11-21 21:08:17,440 | INFO     | did not find any defunct processes belonging to 1534677
[2025-11-21 16:08:49] 2025-11-21 21:08:17,449 | INFO     | did not find any defunct processes belonging to 1534677
[2025-11-21 16:08:49] 2025-11-21 21:08:17,451 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 16:08:49] 2025-11-21 21:08:17,451 | INFO     | ready for new job
[2025-11-21 16:08:49] 2025-11-21 21:08:17,452 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 16:08:49] 2025-11-21 21:08:17,457 | INFO     | ***************************************
[2025-11-21 16:08:49] 2025-11-21 21:08:17,457 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 16:08:49] 2025-11-21 21:08:17,457 | INFO     | ***************************************
[2025-11-21 16:08:49] 2025-11-21 21:08:17,457 | INFO     | 
[2025-11-21 16:08:49] 2025-11-21 21:08:17,459 | INFO     | architecture information:
[2025-11-21 16:08:49] 2025-11-21 21:08:17,460 | INFO     | executing command: cat /etc/os-release
[2025-11-21 16:08:49] 2025-11-21 21:08:17,478 | INFO     | cat /etc/os-release:
[2025-11-21 16:08:49] NAME="CentOS Linux"
[2025-11-21 16:08:49] VERSION="7 (Core)"
[2025-11-21 16:08:49] ID="centos"
[2025-11-21 16:08:49] ID_LIKE="rhel fedora"
[2025-11-21 16:08:49] VERSION_ID="7"
[2025-11-21 16:08:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 16:08:49] ANSI_COLOR="0;31"
[2025-11-21 16:08:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 16:08:49] HOME_URL="https://www.centos.org/"
[2025-11-21 16:08:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 16:08:49] 
[2025-11-21 16:08:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 16:08:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 16:08:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 16:08:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 16:08:49] 
[2025-11-21 16:08:49] 2025-11-21 21:08:17,479 | INFO     | ***************************************
[2025-11-21 16:08:49] 2025-11-21 21:08:17,984 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-21 16:08:49] 2025-11-21 21:08:18,023 | INFO     | sufficient remaining disk space (49668947968 B)
[2025-11-21 16:08:49] 2025-11-21 21:08:18,024 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 16:08:49] 2025-11-21 21:08:18,029 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 16:08:49] 2025-11-21 21:08:18,030 | INFO     | update_server=False
[2025-11-21 16:08:49] 2025-11-21 21:08:18,030 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 16:08:49] 2025-11-21 21:08:18,031 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 16:08:49] 2025-11-21 21:08:18,153 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 16:08:49] 2025-11-21 21:08:18,153 | INFO     | aborting loop
[2025-11-21 16:08:49] 2025-11-21 21:08:18,266 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 16:08:49] 2025-11-21 21:08:18,273 | INFO     | all job control threads have been joined
[2025-11-21 16:08:49] 2025-11-21 21:08:19,036 | INFO     | [job] retrieve thread has finished
[2025-11-21 16:08:49] 2025-11-21 21:08:19,086 | INFO     | all data control threads have been joined
[2025-11-21 16:08:49] 2025-11-21 21:08:19,159 | INFO     | [job] job monitor thread has finished
[2025-11-21 16:08:49] 2025-11-21 21:08:19,186 | INFO     | all payload control threads have been joined
[2025-11-21 16:08:49] 2025-11-21 21:08:19,235 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 16:08:49] 2025-11-21 21:08:19,280 | INFO     | [job] control thread has finished
[2025-11-21 16:08:49] 2025-11-21 21:08:19,374 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 16:08:49] 2025-11-21 21:08:19,523 | INFO     | [payload] failed_post thread has finished
[2025-11-21 16:08:49] 2025-11-21 21:08:19,895 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 16:08:49] 2025-11-21 21:08:20,038 | INFO     | [data] copytool_out thread has finished
[2025-11-21 16:08:49] 2025-11-21 21:08:20,088 | INFO     | [payload] validate_post thread has finished
[2025-11-21 16:08:49] 2025-11-21 21:08:20,093 | INFO     | [data] control thread has finished
[2025-11-21 16:08:49] 2025-11-21 21:08:20,139 | INFO     | [job] validate thread has finished
[2025-11-21 16:08:49] 2025-11-21 21:08:20,158 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 16:08:49] 2025-11-21 21:08:20,194 | INFO     | [payload] control thread has finished
[2025-11-21 16:08:49] 2025-11-21 21:08:20,364 | INFO     | [data] copytool_in thread has finished
[2025-11-21 16:08:49] 2025-11-21 21:08:20,661 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 16:08:49] 2025-11-21 21:08:21,667 | INFO     | [job] queue monitor thread has finished
[2025-11-21 16:08:49] 2025-11-21 21:08:22,317 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 16:08:49] 2025-11-21 21:08:29,322 | INFO     | [monitor] cgroup control has ended
[2025-11-21 16:08:49] 2025-11-21 21:08:30,371 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139910131832640)>', '<ExcThread(monitor, started 139909490796288)>']
[2025-11-21 16:08:49] 2025-11-21 21:08:35,409 | INFO     | all workflow threads have been joined
[2025-11-21 16:08:49] 2025-11-21 21:08:35,409 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 16:08:49] 2025-11-21 21:08:35,409 | INFO     | traces error code: 0
[2025-11-21 16:08:49] 2025-11-21 21:08:35,410 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 16:08:49] 2025-11-21 21:08:49,216 | INFO     | PID=1526347 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 16:08:49] 2025-11-21 21:08:49,217 | INFO     | .. there are 8 such processes running
[2025-11-21 16:08:49] 2025-11-21 21:08:49,218 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 16:08:49] 2025-11-21 21:08:49,218 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 16:08:49] 2025-11-21 21:08:49,218 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 16:08:49] 2025-11-21 21:08:49,218 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 16:08:49] 2025-11-21 21:08:49,218 | INFO     | [monitor] control thread has ended
[2025-11-21 16:08:49] 2025-11-21 21:08:49,453 [wrapper] ==== pilot stdout END ====
[2025-11-21 16:08:49] 2025-11-21 21:08:49,456 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 16:08:49] 2025-11-21 21:08:49,459 [wrapper] pilotpid: 1526347
[2025-11-21 16:08:49] 2025-11-21 21:08:49,462 [wrapper] Pilot exit status: 0
[2025-11-21 16:08:49] 2025-11-21 21:08:49,479 [wrapper] pandaids: 6893858419
[2025-11-21 16:08:49] 2025-11-21 21:08:49,526 [wrapper] cleanup supervisor_pilot 2923024 1526348
[2025-11-21 16:08:49] 2025-11-21 21:08:49,530 [wrapper] Test setup, not cleaning
[2025-11-21 16:08:49] 2025-11-21 21:08:49,533 [wrapper] apfmon messages muted
[2025-11-21 16:08:49] 2025-11-21 21:08:49,536 [wrapper] ==== wrapper stdout END ====
[2025-11-21 16:08:49] 2025-11-21 21:08:49,539 [wrapper] ==== wrapper stderr END ====
[2025-11-21 16:08:49]  *** Error codes and diagnostics ***
[2025-11-21 16:08:49]     "exeErrorCode": 0,
[2025-11-21 16:08:49]     "exeErrorDiag": "",
[2025-11-21 16:08:49]     "pilotErrorCode": 0,
[2025-11-21 16:08:49]     "pilotErrorDiag": "",
[2025-11-21 16:08:49]  *** Listing of results directory ***
[2025-11-21 16:08:49] total 1314984
[2025-11-21 16:08:49] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 08:12 pilot3.tar.gz
[2025-11-21 16:08:49] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 08:22 queuedata.json
[2025-11-21 16:08:49] -rwx------. 1 boincer umatlas     36292 Nov 20 08:22 runpilot2-wrapper.sh
[2025-11-21 16:08:49] -rw-r--r--. 1 boincer umatlas       100 Nov 21 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 16:08:49] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 00:03 run_atlas
[2025-11-21 16:08:49] -rw-r--r--. 1 boincer umatlas       105 Nov 21 00:03 job.xml
[2025-11-21 16:08:49] -rw-r--r--. 2 boincer umatlas 411166731 Nov 21 00:03 EVNT.47493127._000513.pool.root.1
[2025-11-21 16:08:49] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 00:03 start_atlas.sh
[2025-11-21 16:08:49] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 00:03 shared
[2025-11-21 16:08:49] -rw-r--r--. 2 boincer umatlas    590103 Nov 21 00:03 input.tar.gz
[2025-11-21 16:08:49] -rw-r--r--. 1 boincer umatlas         0 Nov 21 00:03 boinc_lockfile
[2025-11-21 16:08:49] -rw-r--r--. 1 boincer umatlas      2786 Nov 21 00:03 pandaJob.out
[2025-11-21 16:08:49] -rw-------. 1 boincer umatlas        57 Nov 21 00:03 setup.sh.local
[2025-11-21 16:08:49] -rw-------. 1 boincer umatlas    989817 Nov 21 00:03 agis_schedconf.cvmfs.json
[2025-11-21 16:08:49] drwx------. 5 boincer umatlas      4096 Nov 21 00:03 pilot3
[2025-11-21 16:08:49] -rw-r--r--. 1 boincer umatlas       533 Nov 21 15:43 boinc_task_state.xml
[2025-11-21 16:08:49] -rw-r--r--. 1 boincer umatlas      6661 Nov 21 16:03 init_data.xml
[2025-11-21 16:08:49] -rw-------. 1 boincer umatlas 911121397 Nov 21 16:07 HITS.47523449._005125.pool.root.1
[2025-11-21 16:08:49] -rw-------. 1 boincer umatlas      1054 Nov 21 16:07 memory_monitor_summary.json
[2025-11-21 16:08:49] -rw-------. 1 boincer umatlas   1526164 Nov 21 16:07 agis_ddmendpoints.agis.ALL.json
[2025-11-21 16:08:49] -rw-------. 1 boincer umatlas   2256607 Nov 21 16:07 log.47523449._005125.job.log.tgz.1
[2025-11-21 16:08:49] -rw-------. 1 boincer umatlas      8623 Nov 21 16:08 heartbeat.json
[2025-11-21 16:08:49] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 16:08 boinc_mmap_file
[2025-11-21 16:08:49] -rw-r--r--. 1 boincer umatlas        29 Nov 21 16:08 wrapper_checkpoint.txt
[2025-11-21 16:08:49] -rw-------. 1 boincer umatlas        95 Nov 21 16:08 pilot_heartbeat.json
[2025-11-21 16:08:49] -rw-------. 1 boincer umatlas       822 Nov 21 16:08 pilotlog.txt
[2025-11-21 16:08:49] -rw-------. 1 boincer umatlas   7911903 Nov 21 16:08 log.47523449._005125.job.log.1
[2025-11-21 16:08:49] -rw-------. 1 boincer umatlas       353 Nov 21 16:08 output.list
[2025-11-21 16:08:49] -rw-r--r--. 1 boincer umatlas       620 Nov 21 16:08 runtime_log
[2025-11-21 16:08:49] -rw-------. 1 boincer umatlas  10188800 Nov 21 16:08 result.tar.gz
[2025-11-21 16:08:49] -rw-------. 1 boincer umatlas       660 Nov 21 16:08 XMIODmQnJg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm2hGKDmH6JsOo.diag
[2025-11-21 16:08:49] -rw-r--r--. 1 boincer umatlas      9343 Nov 21 16:08 runtime_log.err
[2025-11-21 16:08:49] -rw-r--r--. 1 boincer umatlas     21845 Nov 21 16:08 stderr.txt
[2025-11-21 16:08:49] HITS file was successfully produced:
[2025-11-21 16:08:49] -rw-------. 1 boincer umatlas 911121397 Nov 21 16:07 shared/HITS.pool.root.1
[2025-11-21 16:08:49]  *** Contents of shared directory: ***
[2025-11-21 16:08:49] total 1301852
[2025-11-21 16:08:49] -rw-r--r--. 2 boincer umatlas 411166731 Nov 21 00:03 ATLAS.root_0
[2025-11-21 16:08:49] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 00:03 start_atlas.sh
[2025-11-21 16:08:49] -rw-r--r--. 2 boincer umatlas    590103 Nov 21 00:03 input.tar.gz
[2025-11-21 16:08:49] -rw-------. 1 boincer umatlas 911121397 Nov 21 16:07 HITS.pool.root.1
[2025-11-21 16:08:49] -rw-------. 1 boincer umatlas  10188800 Nov 21 16:08 result.tar.gz
16:08:51 (1521388): run_atlas exited; CPU time 294822.661480
16:08:51 (1521388): called boinc_finish(0)

</stderr_txt>
]]>

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