Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:20:01 (14956): wrapper (7.7.26015): starting
05:20:01 (14956): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 05:20:01] Arguments: --nthreads 8
[2025-11-24 05:20:01] Threads: 8
[2025-11-24 05:20:01] Checking for CVMFS
[2025-11-24 05:20:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 05:20:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 05:20:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 05:20:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 05:20:03] 2.11.2.0 3687 282037 140360 153233 0 59 22569903 25165825 3915 130560 2 144948479 99.885 73894704 2726 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 05:20:03] CVMFS is ok
[2025-11-24 05:20:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 05:20:03] Checking for apptainer binary...
[2025-11-24 05:20:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 05:20:03] Running /usr/bin/apptainer --version
[2025-11-24 05:20:03] apptainer version 1.3.2-1.el7
[2025-11-24 05:20:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 05:20:10] cg-vwn214.simple-grid.lan
[2025-11-24 05:20:10] apptainer works
[2025-11-24 05:20:10] Set ATHENA_PROC_NUMBER=8
[2025-11-24 05:20:10] Set ATHENA_CORE_NUMBER=8
[2025-11-24 05:20:10] Starting ATLAS job with PandaID=6893874401
[2025-11-24 05:20:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 02:59:40]  *** The last 200 lines of the pilot log: ***
[2025-11-25 02:59:40] 2025-11-25 01:58:37,364 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:59:40] 2025-11-25 01:58:37,557 | INFO     | PID=18769 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 02:59:40] 2025-11-25 01:58:37,558 | INFO     | .. there are 2 such processes running
[2025-11-25 02:59:40] 2025-11-25 01:58:38,561 | INFO     | time since job start (77665s) is within the limit (172800.0s)
[2025-11-25 02:59:40] 2025-11-25 01:58:39,873 | INFO     | monitor loop #5207: job 0:6893874401 is in state 'finished'
[2025-11-25 02:59:40] 2025-11-25 01:58:39,873 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:59:40] 2025-11-25 01:58:40,577 | INFO     | time since job start (77667s) is within the limit (172800.0s)
[2025-11-25 02:59:40] 2025-11-25 01:58:42,384 | INFO     | monitor loop #5208: job 0:6893874401 is in state 'finished'
[2025-11-25 02:59:40] 2025-11-25 01:58:42,384 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:59:40] 2025-11-25 01:58:42,584 | INFO     | time since job start (77669s) is within the limit (172800.0s)
[2025-11-25 02:59:40] 2025-11-25 01:58:44,593 | INFO     | time since job start (77671s) is within the limit (172800.0s)
[2025-11-25 02:59:40] 2025-11-25 01:58:44,894 | INFO     | monitor loop #5209: job 0:6893874401 is in state 'finished'
[2025-11-25 02:59:40] 2025-11-25 01:58:44,894 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:59:40] 2025-11-25 01:58:45,517 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 02:59:40] 2025-11-25 01:58:45,518 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 02:59:40] 2025-11-25 01:58:45,520 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-6893874401/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 02:59:40] 2025-11-25 01:58:45,521 | INFO     | extracted standard info from prmon json
[2025-11-25 02:59:40] 2025-11-25 01:58:45,521 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 02:59:40] 2025-11-25 01:58:45,521 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 02:59:40] 2025-11-25 01:58:45,545 | INFO     | fitting pss+swap vs Time
[2025-11-25 02:59:40] 2025-11-25 01:58:45,548 | INFO     | sum of square deviations: 624729695996.5996
[2025-11-25 02:59:40] 2025-11-25 01:58:45,595 | INFO     | sum of deviations: 1865907874348.6323
[2025-11-25 02:59:40] 2025-11-25 01:58:45,595 | INFO     | mean x: 1763997262.0815518
[2025-11-25 02:59:40] 2025-11-25 01:58:45,595 | INFO     | mean y: 2827752.207442597
[2025-11-25 02:59:40] 2025-11-25 01:58:45,596 | INFO     | intersect: -5265781060.115305
[2025-11-25 02:59:40] 2025-11-25 01:58:45,597 | INFO     | chi2: 27.718349495016575
[2025-11-25 02:59:40] 2025-11-25 01:58:45,599 | INFO     | sum of square deviations: 617339918243.2281
[2025-11-25 02:59:40] 2025-11-25 01:58:45,657 | INFO     | sum of deviations: 2279133226256.97
[2025-11-25 02:59:40] 2025-11-25 01:58:45,657 | INFO     | mean x: 1763997109.5858505
[2025-11-25 02:59:40] 2025-11-25 01:58:45,657 | INFO     | mean y: 2836278.616057234
[2025-11-25 02:59:40] 2025-11-25 01:58:45,657 | INFO     | intersect: -6509596021.111502
[2025-11-25 02:59:40] 2025-11-25 01:58:45,659 | INFO     | chi2: 24.447766125862408
[2025-11-25 02:59:40] 2025-11-25 01:58:45,659 | INFO     | current chi2=24.447766125862408 (change=11.799343859713503 %)
[2025-11-25 02:59:40] 2025-11-25 01:58:45,659 | INFO     | right removable region: 1257
[2025-11-25 02:59:40] 2025-11-25 01:58:45,661 | INFO     | sum of square deviations: 617339084983.2288
[2025-11-25 02:59:40] 2025-11-25 01:58:45,716 | INFO     | sum of deviations: 1342260417224.061
[2025-11-25 02:59:40] 2025-11-25 01:58:45,717 | INFO     | mean x: 1763997414.5858505
[2025-11-25 02:59:40] 2025-11-25 01:58:45,717 | INFO     | mean y: 2838556.666136725
[2025-11-25 02:59:40] 2025-11-25 01:58:45,717 | INFO     | intersect: -3832564001.3113694
[2025-11-25 02:59:40] 2025-11-25 01:58:45,718 | INFO     | chi2: 23.1166693286686
[2025-11-25 02:59:40] 2025-11-25 01:58:45,719 | INFO     | current chi2=23.1166693286686 (change=16.601566291583495 %)
[2025-11-25 02:59:40] 2025-11-25 01:58:45,719 | INFO     | left removable region: 10
[2025-11-25 02:59:40] 2025-11-25 01:58:45,721 | INFO     | sum of square deviations: 601286378009.6442
[2025-11-25 02:59:40] 2025-11-25 01:58:45,771 | INFO     | sum of deviations: 1407777675500.2944
[2025-11-25 02:59:40] 2025-11-25 01:58:45,772 | INFO     | mean x: 1763997384.095429
[2025-11-25 02:59:40] 2025-11-25 01:58:45,772 | INFO     | mean y: 2858259.5605453085
[2025-11-25 02:59:40] 2025-11-25 01:58:45,772 | INFO     | intersect: -4127147387.982384
[2025-11-25 02:59:40] 2025-11-25 01:58:45,773 | INFO     | chi2: 15.891418927319924
[2025-11-25 02:59:40] 2025-11-25 01:58:45,774 | INFO     | current memory leak: 2.34 B/s (using 1247 data points, chi2=15.89)
[2025-11-25 02:59:40] 2025-11-25 01:58:45,776 | INFO     | could have reported an average CPU frequency of 1999 MHz (42 samples)
[2025-11-25 02:59:40] 2025-11-25 01:58:45,776 | INFO     | ..............................
[2025-11-25 02:59:40] 2025-11-25 01:58:45,776 | INFO     | . Timing measurements:
[2025-11-25 02:59:40] 2025-11-25 01:58:45,777 | INFO     | . get job = 0 s
[2025-11-25 02:59:40] 2025-11-25 01:58:45,777 | INFO     | . initial setup = 11 s
[2025-11-25 02:59:40] 2025-11-25 01:58:45,777 | INFO     | . payload setup = 166 s
[2025-11-25 02:59:40] 2025-11-25 01:58:45,777 | INFO     | . stage-in = 0 s
[2025-11-25 02:59:40] 2025-11-25 01:58:45,777 | INFO     | . payload execution = 77190 s
[2025-11-25 02:59:40] 2025-11-25 01:58:45,777 | INFO     | . stage-out = 5 s
[2025-11-25 02:59:40] 2025-11-25 01:58:45,777 | INFO     | . log creation = 2 s
[2025-11-25 02:59:40] 2025-11-25 01:58:45,777 | INFO     | ..............................
[2025-11-25 02:59:40] 2025-11-25 01:58:46,238 | INFO     | 
[2025-11-25 02:59:40] 2025-11-25 01:58:46,238 | INFO     | job summary report
[2025-11-25 02:59:40] 2025-11-25 01:58:46,238 | INFO     | --------------------------------------------------
[2025-11-25 02:59:40] 2025-11-25 01:58:46,238 | INFO     | PanDA job id: 6893874401
[2025-11-25 02:59:40] 2025-11-25 01:58:46,238 | INFO     | task id: 47523449
[2025-11-25 02:59:40] 2025-11-25 01:58:46,238 | INFO     | errors: (none)
[2025-11-25 02:59:40] 2025-11-25 01:58:46,238 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 02:59:40] 2025-11-25 01:58:46,238 | INFO     | pilot state: finished 
[2025-11-25 02:59:40] 2025-11-25 01:58:46,239 | INFO     | transexitcode: 0
[2025-11-25 02:59:40] 2025-11-25 01:58:46,239 | INFO     | exeerrorcode: 0
[2025-11-25 02:59:40] 2025-11-25 01:58:46,239 | INFO     | exeerrordiag: 
[2025-11-25 02:59:40] 2025-11-25 01:58:46,239 | INFO     | exitcode: 0
[2025-11-25 02:59:40] 2025-11-25 01:58:46,239 | INFO     | exitmsg: OK
[2025-11-25 02:59:40] 2025-11-25 01:58:46,239 | INFO     | cpuconsumptiontime: 334465 s
[2025-11-25 02:59:40] 2025-11-25 01:58:46,239 | INFO     | nevents: 1000
[2025-11-25 02:59:40] 2025-11-25 01:58:46,239 | INFO     | neventsw: 0
[2025-11-25 02:59:40] 2025-11-25 01:58:46,239 | INFO     | pid: 25305
[2025-11-25 02:59:40] 2025-11-25 01:58:46,239 | INFO     | pgrp: 25305
[2025-11-25 02:59:40] 2025-11-25 01:58:46,239 | INFO     | corecount: 8
[2025-11-25 02:59:40] 2025-11-25 01:58:46,239 | INFO     | event service: False
[2025-11-25 02:59:40] 2025-11-25 01:58:46,240 | INFO     | sizes: {0: 2298580, 1: 2298835, 12: 2298835, 23: 2298863, 34: 2298891, 44: 2298919, 55: 2299075, 66: 2299103, 77: 2299131, 87: 2299187, 89: 2299477, 98: 2299785, 7
[2025-11-25 02:59:40] 2025-11-25 01:58:46,240 | INFO     | --------------------------------------------------
[2025-11-25 02:59:40] 2025-11-25 01:58:46,240 | INFO     | 
[2025-11-25 02:59:40] 2025-11-25 01:58:46,240 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2025-11-25 02:59:40] 2025-11-25 01:58:46,640 | INFO     | time since job start (77673s) is within the limit (172800.0s)
[2025-11-25 02:59:40] 2025-11-25 01:58:46,886 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 02:59:40] 2025-11-25 01:58:46,886 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 02:59:40] 2025-11-25 01:58:46,887 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 02:59:40] 2025-11-25 01:58:46,887 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 02:59:40] 2025-11-25 01:58:46,887 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 02:59:40] 2025-11-25 01:58:46,887 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 02:59:40] 2025-11-25 01:58:46,887 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 02:59:40] 2025-11-25 01:58:46,887 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 02:59:40] 2025-11-25 01:58:46,887 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 02:59:40] 2025-11-25 01:58:46,887 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 02:59:40] 2025-11-25 01:58:46,888 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 02:59:40] 2025-11-25 01:58:46,888 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 02:59:40] 2025-11-25 01:58:46,888 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 02:59:40] 2025-11-25 01:58:46,888 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 02:59:40] 2025-11-25 01:58:46,888 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 02:59:40] 2025-11-25 01:58:46,888 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 02:59:40] 2025-11-25 01:58:46,888 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 02:59:40] 2025-11-25 01:58:46,888 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 02:59:40] 2025-11-25 01:58:46,888 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 02:59:40] 2025-11-25 01:58:46,889 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 02:59:40] 2025-11-25 01:58:46,889 | INFO     | job 6893874401 has completed (purged errors)
[2025-11-25 02:59:40] 2025-11-25 01:58:46,889 | INFO     | overall cleanup function is called
[2025-11-25 02:59:40] 2025-11-25 01:58:47,910 | INFO     | --- collectZombieJob: --- 10, [25305]
[2025-11-25 02:59:40] 2025-11-25 01:58:47,910 | INFO     | zombie collector waiting for pid 25305
[2025-11-25 02:59:40] 2025-11-25 01:58:47,910 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 02:59:40] 2025-11-25 01:58:47,910 | INFO     | collected zombie processes
[2025-11-25 02:59:40] 2025-11-25 01:58:47,910 | INFO     | will attempt to kill all subprocesses of pid=25305
[2025-11-25 02:59:40] 2025-11-25 01:58:48,001 | INFO     | process IDs to be killed: [25305] (in reverse order)
[2025-11-25 02:59:40] 2025-11-25 01:58:48,676 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 02:59:40] 2025-11-25 01:58:48,677 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 02:59:40] 2025-11-25 01:58:48,679 | INFO     | did not find any defunct processes belonging to 25305
[2025-11-25 02:59:40] 2025-11-25 01:58:48,687 | INFO     | did not find any defunct processes belonging to 25305
[2025-11-25 02:59:40] 2025-11-25 01:58:48,732 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 02:59:40] 2025-11-25 01:58:48,732 | INFO     | ready for new job
[2025-11-25 02:59:40] 2025-11-25 01:58:48,732 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 02:59:40] 2025-11-25 01:58:48,738 | INFO     | ***************************************
[2025-11-25 02:59:40] 2025-11-25 01:58:48,738 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 02:59:40] 2025-11-25 01:58:48,738 | INFO     | ***************************************
[2025-11-25 02:59:40] 2025-11-25 01:58:48,738 | INFO     | 
[2025-11-25 02:59:40] 2025-11-25 01:58:48,739 | INFO     | pilot is running in a VM
[2025-11-25 02:59:40] 2025-11-25 01:58:48,739 | INFO     | architecture information:
[2025-11-25 02:59:40] 2025-11-25 01:58:48,746 | INFO     | executing command: cat /etc/os-release
[2025-11-25 02:59:40] 2025-11-25 01:58:49,028 | INFO     | cat /etc/os-release:
[2025-11-25 02:59:40] NAME="CentOS Linux"
[2025-11-25 02:59:40] VERSION="7 (Core)"
[2025-11-25 02:59:40] ID="centos"
[2025-11-25 02:59:40] ID_LIKE="rhel fedora"
[2025-11-25 02:59:40] VERSION_ID="7"
[2025-11-25 02:59:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 02:59:40] ANSI_COLOR="0;31"
[2025-11-25 02:59:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 02:59:40] HOME_URL="https://www.centos.org/"
[2025-11-25 02:59:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 02:59:40] 
[2025-11-25 02:59:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 02:59:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 02:59:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 02:59:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 02:59:40] 
[2025-11-25 02:59:40] 2025-11-25 01:58:49,029 | INFO     | ***************************************
[2025-11-25 02:59:40] 2025-11-25 01:58:49,532 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2025-11-25 02:59:40] 2025-11-25 01:58:49,848 | INFO     | sufficient remaining disk space (493079232512 B)
[2025-11-25 02:59:40] 2025-11-25 01:58:49,848 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 02:59:40] 2025-11-25 01:58:49,848 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 02:59:40] 2025-11-25 01:58:49,848 | INFO     | update_server=False
[2025-11-25 02:59:40] 2025-11-25 01:58:49,849 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 02:59:40] 2025-11-25 01:58:49,922 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 02:59:40] 2025-11-25 01:58:49,923 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 02:59:40] 2025-11-25 01:58:49,923 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 02:59:40] 2025-11-25 01:58:49,923 | INFO     | will abort loop
[2025-11-25 02:59:40] 2025-11-25 01:58:50,189 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 02:59:40] 2025-11-25 01:58:50,394 | INFO     | all data control threads have been joined
[2025-11-25 02:59:40] 2025-11-25 01:58:50,683 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 02:59:40] 2025-11-25 01:58:50,855 | INFO     | [job] retrieve thread has finished
[2025-11-25 02:59:40] 2025-11-25 01:58:50,885 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 02:59:40] 2025-11-25 01:58:50,929 | INFO     | [job] job monitor thread has finished
[2025-11-25 02:59:40] 2025-11-25 01:58:50,963 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 02:59:40] 2025-11-25 01:58:51,058 | INFO     | all job control threads have been joined
[2025-11-25 02:59:40] 2025-11-25 01:58:51,213 | INFO     | all payload control threads have been joined
[2025-11-25 02:59:40] 2025-11-25 01:58:51,215 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 02:59:40] 2025-11-25 01:58:51,327 | INFO     | [data] copytool_in thread has finished
[2025-11-25 02:59:40] 2025-11-25 01:58:51,342 | INFO     | [job] validate thread has finished
[2025-11-25 02:59:40] 2025-11-25 01:58:51,400 | INFO     | [data] control thread has finished
[2025-11-25 02:59:40] 2025-11-25 01:58:51,604 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 02:59:40] 2025-11-25 01:58:51,626 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 02:59:40] 2025-11-25 01:58:51,969 | INFO     | [job] queue monitor thread has finished
[2025-11-25 02:59:40] 2025-11-25 01:58:52,065 | INFO     | [job] control thread has finished
[2025-11-25 02:59:40] 2025-11-25 01:58:52,144 | INFO     | [payload] validate_post thread has finished
[2025-11-25 02:59:40] 2025-11-25 01:58:52,220 | INFO     | [payload] control thread has finished
[2025-11-25 02:59:40] 2025-11-25 01:58:52,306 | INFO     | [payload] failed_post thread has finished
[2025-11-25 02:59:40] 2025-11-25 01:58:52,690 | INFO     | [data] copytool_out thread has finished
[2025-11-25 02:59:40] 2025-11-25 01:58:54,198 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 02:59:40] 2025-11-25 01:59:19,820 | INFO     | PID=18769 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 02:59:40] 2025-11-25 01:59:19,820 | INFO     | .. there are 2 such processes running
[2025-11-25 02:59:40] 2025-11-25 01:59:19,826 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 02:59:40] 2025-11-25 01:59:19,826 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 02:59:40] 2025-11-25 01:59:19,826 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 02:59:40] 2025-11-25 01:59:28,138 | INFO     | [monitor] cgroup control has ended
[2025-11-25 02:59:40] 2025-11-25 01:59:29,475 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140268405557056)>', '<ExcThread(monitor, started 140267944384256)>']
[2025-11-25 02:59:40] 2025-11-25 01:59:29,885 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 02:59:40] 2025-11-25 01:59:29,886 | INFO     | [monitor] control thread has ended
[2025-11-25 02:59:40] 2025-11-25 01:59:34,501 | INFO     | all workflow threads have been joined
[2025-11-25 02:59:40] 2025-11-25 01:59:34,501 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 02:59:40] 2025-11-25 01:59:34,501 | INFO     | traces error code: 0
[2025-11-25 02:59:40] 2025-11-25 01:59:34,501 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 02:59:40] 2025-11-25 01:59:35,000 [wrapper] ==== pilot stdout END ====
[2025-11-25 02:59:40] 2025-11-25 01:59:35,116 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 02:59:40] 2025-11-25 01:59:35,229 [wrapper] pilotpid: 18769
[2025-11-25 02:59:40] 2025-11-25 01:59:35,320 [wrapper] Pilot exit status: 0
[2025-11-25 02:59:40] 2025-11-25 01:59:35,813 [wrapper] pandaids: 6893874401
[2025-11-25 02:59:40] 2025-11-25 01:59:36,754 [wrapper] cleanup supervisor_pilot 11071 18770
[2025-11-25 02:59:40] 2025-11-25 01:59:36,836 [wrapper] Test setup, not cleaning
[2025-11-25 02:59:40] 2025-11-25 01:59:36,952 [wrapper] apfmon messages muted
[2025-11-25 02:59:40] 2025-11-25 01:59:37,055 [wrapper] ==== wrapper stdout END ====
[2025-11-25 02:59:40] 2025-11-25 01:59:37,158 [wrapper] ==== wrapper stderr END ====
[2025-11-25 02:59:40]  *** Error codes and diagnostics ***
[2025-11-25 02:59:40]     "exeErrorCode": 0,
[2025-11-25 02:59:40]     "exeErrorDiag": "",
[2025-11-25 02:59:40]     "pilotErrorCode": 0,
[2025-11-25 02:59:40]     "pilotErrorDiag": "",
[2025-11-25 02:59:40]  *** Listing of results directory ***
[2025-11-25 02:59:40] total 1328724
[2025-11-25 02:59:40] -rw-r--r--. 1 boinc boinc    576529 Nov 20 17:00 pilot3.tar.gz
[2025-11-25 02:59:40] -rw-r--r--. 1 boinc boinc      5112 Nov 20 17:05 queuedata.json
[2025-11-25 02:59:40] -rwx------. 1 boinc boinc     36292 Nov 20 17:06 runpilot2-wrapper.sh
[2025-11-25 02:59:40] -rw-r--r--. 1 boinc boinc       100 Nov 24 05:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 02:59:40] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 05:20 run_atlas
[2025-11-25 02:59:40] -rw-r--r--. 1 boinc boinc       105 Nov 24 05:20 job.xml
[2025-11-25 02:59:40] -rw-r--r--. 2 boinc boinc 411868477 Nov 24 05:20 EVNT.47493127._000718.pool.root.1
[2025-11-25 02:59:40] -rw-r--r--. 1 boinc boinc      6392 Nov 24 05:20 init_data.xml
[2025-11-25 02:59:40] -rw-r--r--. 2 boinc boinc     15847 Nov 24 05:20 start_atlas.sh
[2025-11-25 02:59:40] drwxrwx--x. 2 boinc boinc        68 Nov 24 05:20 shared
[2025-11-25 02:59:40] -rw-r--r--. 2 boinc boinc    590103 Nov 24 05:20 input.tar.gz
[2025-11-25 02:59:40] -rw-r--r--. 1 boinc boinc         0 Nov 24 05:20 boinc_lockfile
[2025-11-25 02:59:40] -rw-r--r--. 1 boinc boinc      2785 Nov 24 05:20 pandaJob.out
[2025-11-25 02:59:40] -rw-------. 1 boinc boinc    989786 Nov 24 05:24 agis_schedconf.cvmfs.json
[2025-11-25 02:59:40] drwx------. 5 boinc boinc      4096 Nov 24 05:24 pilot3
[2025-11-25 02:59:40] -rw-r--r--. 1 boinc boinc       533 Nov 25 02:23 boinc_task_state.xml
[2025-11-25 02:59:40] -rw-------. 1 boinc boinc 919447134 Nov 25 02:55 HITS.47523449._007174.pool.root.1
[2025-11-25 02:59:40] -rw-------. 1 boinc boinc      1033 Nov 25 02:56 memory_monitor_summary.json
[2025-11-25 02:59:40] -rw-------. 1 boinc boinc   1516227 Nov 25 02:56 agis_ddmendpoints.agis.ALL.json
[2025-11-25 02:59:40] -rw-------. 1 boinc boinc   2386203 Nov 25 02:56 log.47523449._007174.job.log.tgz.1
[2025-11-25 02:59:40] -rw-------. 1 boinc boinc      8641 Nov 25 02:58 heartbeat.json
[2025-11-25 02:59:40] -rw-r--r--. 1 boinc boinc        29 Nov 25 02:59 wrapper_checkpoint.txt
[2025-11-25 02:59:40] -rw-r--r--. 1 boinc boinc      8192 Nov 25 02:59 boinc_mmap_file
[2025-11-25 02:59:40] -rw-------. 1 boinc boinc        95 Nov 25 02:59 pilot_heartbeat.json
[2025-11-25 02:59:40] -rw-------. 1 boinc boinc      5071 Nov 25 02:59 pilotlog.txt
[2025-11-25 02:59:40] -rw-------. 1 boinc boinc  10309888 Nov 25 02:59 log.47523449._007174.job.log.1
[2025-11-25 02:59:40] -rw-------. 1 boinc boinc       353 Nov 25 02:59 output.list
[2025-11-25 02:59:40] -rw-r--r--. 1 boinc boinc       620 Nov 25 02:59 runtime_log
[2025-11-25 02:59:40] -rw-------. 1 boinc boinc  12718080 Nov 25 02:59 result.tar.gz
[2025-11-25 02:59:40] -rw-r--r--. 1 boinc boinc      8833 Nov 25 02:59 runtime_log.err
[2025-11-25 02:59:40] -rw-------. 1 boinc boinc       662 Nov 25 02:59 fV0MDm6LMg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm2sGKDmBdzxXn.diag
[2025-11-25 02:59:40] -rw-r--r--. 1 boinc boinc     21435 Nov 25 02:59 stderr.txt
[2025-11-25 02:59:40] HITS file was successfully produced:
[2025-11-25 02:59:40] -rw-------. 1 boinc boinc 919447134 Nov 25 02:55 shared/HITS.pool.root.1
[2025-11-25 02:59:40]  *** Contents of shared directory: ***
[2025-11-25 02:59:40] total 1313132
[2025-11-25 02:59:40] -rw-r--r--. 2 boinc boinc 411868477 Nov 24 05:20 ATLAS.root_0
[2025-11-25 02:59:40] -rw-r--r--. 2 boinc boinc     15847 Nov 24 05:20 start_atlas.sh
[2025-11-25 02:59:40] -rw-r--r--. 2 boinc boinc    590103 Nov 24 05:20 input.tar.gz
[2025-11-25 02:59:40] -rw-------. 1 boinc boinc 919447134 Nov 25 02:55 HITS.pool.root.1
[2025-11-25 02:59:40] -rw-------. 1 boinc boinc  12718080 Nov 25 02:59 result.tar.gz
02:59:42 (14956): run_atlas exited; CPU time 334656.323089
02:59:42 (14956): called boinc_finish(0)

</stderr_txt>
]]>

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