Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:29:11 (778190): wrapper (7.7.26015): starting
06:29:11 (778190): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 06:29:11] Arguments: --nthreads 4
[2025-11-21 06:29:11] Threads: 4
[2025-11-21 06:29:11] Checking for CVMFS
[2025-11-21 06:29:11] No cvmfs_config command found, will try listing directly
[2025-11-21 06:29:11] CVMFS is ok
[2025-11-21 06:29:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 06:29:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 06:29:11] Further information can be found at the LHC@home message board.
[2025-11-21 06:29:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 06:29:11] Checking for apptainer binary...
[2025-11-21 06:29:11] which: no apptainer in ((null))
[2025-11-21 06:29:11] apptainer is not installed, using version from CVMFS
[2025-11-21 06:29:11] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 06:29:11] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot100/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2025-11-21 06:29:11] apptainer works
[2025-11-21 06:29:11] Set ATHENA_PROC_NUMBER=4
[2025-11-21 06:29:11] Set ATHENA_CORE_NUMBER=4
[2025-11-21 06:29:11] Starting ATLAS job with PandaID=6893874616
[2025-11-21 06:29:11] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot100/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 21:45:38]  *** The last 200 lines of the pilot log: ***
[2025-11-21 21:45:38] 2025-11-21 20:44:11,599 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2712.505476562501
[2025-11-21 21:45:38] 2025-11-21 20:44:11,629 | INFO     | using path: /scratch/boinc/var/slot100/slots/1/PanDA_Pilot-6893874616/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 21:45:38] 2025-11-21 20:44:11,630 | INFO     | extracted standard info from prmon json
[2025-11-21 21:45:38] 2025-11-21 20:44:11,630 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 21:45:38] 2025-11-21 20:44:11,630 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 21:45:38] 2025-11-21 20:44:11,644 | INFO     | fitting pss+swap vs Time
[2025-11-21 21:45:38] 2025-11-21 20:44:11,645 | INFO     | sum of square deviations: 225297805650.0
[2025-11-21 21:45:38] 2025-11-21 20:44:11,664 | INFO     | sum of deviations: 735608446337.9999
[2025-11-21 21:45:38] 2025-11-21 20:44:11,664 | INFO     | mean x: 1763730389.0
[2025-11-21 21:45:38] 2025-11-21 20:44:11,665 | INFO     | mean y: 2267965.5406006672
[2025-11-21 21:45:38] 2025-11-21 20:44:11,665 | INFO     | intersect: -5756398735.487724
[2025-11-21 21:45:38] 2025-11-21 20:44:11,666 | INFO     | chi2: 3.391536635032648
[2025-11-21 21:45:38] 2025-11-21 20:44:11,667 | INFO     | sum of square deviations: 221559530907.5
[2025-11-21 21:45:38] 2025-11-21 20:44:11,685 | INFO     | sum of deviations: 880760235363.0
[2025-11-21 21:45:38] 2025-11-21 20:44:11,685 | INFO     | mean x: 1763730236.5
[2025-11-21 21:45:38] 2025-11-21 20:44:11,685 | INFO     | mean y: 2273878.7225950784
[2025-11-21 21:45:38] 2025-11-21 20:44:11,685 | INFO     | intersect: -7009040199.501944
[2025-11-21 21:45:38] 2025-11-21 20:44:11,686 | INFO     | chi2: 1.9414249584414076
[2025-11-21 21:45:38] 2025-11-21 20:44:11,686 | INFO     | current chi2=1.9414249584414076 (change=42.756774661149464 %)
[2025-11-21 21:45:38] 2025-11-21 20:44:11,688 | INFO     | sum of square deviations: 217862838340.0
[2025-11-21 21:45:38] 2025-11-21 20:44:11,706 | INFO     | sum of deviations: 877227823390.0001
[2025-11-21 21:45:38] 2025-11-21 20:44:11,706 | INFO     | mean x: 1763730084.0
[2025-11-21 21:45:38] 2025-11-21 20:44:11,706 | INFO     | mean y: 2273732.088863892
[2025-11-21 21:45:38] 2025-11-21 20:44:11,707 | INFO     | intersect: -7099410586.464854
[2025-11-21 21:45:38] 2025-11-21 20:44:11,708 | INFO     | chi2: 1.9316408368938762
[2025-11-21 21:45:38] 2025-11-21 20:44:11,708 | INFO     | current chi2=1.9316408368938762 (change=0.5039659918344804 %)
[2025-11-21 21:45:38] 2025-11-21 20:44:11,708 | INFO     | right removable region: 888
[2025-11-21 21:45:38] 2025-11-21 20:44:11,709 | INFO     | sum of square deviations: 221559530907.5
[2025-11-21 21:45:38] 2025-11-21 20:44:11,727 | INFO     | sum of deviations: 579365705480.5004
[2025-11-21 21:45:38] 2025-11-21 20:44:11,728 | INFO     | mean x: 1763730541.5
[2025-11-21 21:45:38] 2025-11-21 20:44:11,728 | INFO     | mean y: 2274325.972035794
[2025-11-21 21:45:38] 2025-11-21 20:44:11,728 | INFO     | intersect: -4609781789.457581
[2025-11-21 21:45:38] 2025-11-21 20:44:11,729 | INFO     | chi2: 1.5837585249437531
[2025-11-21 21:45:38] 2025-11-21 20:44:11,729 | INFO     | current chi2=1.5837585249437531 (change=53.302626644677034 %)
[2025-11-21 21:45:38] 2025-11-21 20:44:11,730 | INFO     | sum of square deviations: 217862838340.0
[2025-11-21 21:45:38] 2025-11-21 20:44:11,748 | INFO     | sum of deviations: 551718389115.9999
[2025-11-21 21:45:38] 2025-11-21 20:44:11,748 | INFO     | mean x: 1763730694.0
[2025-11-21 21:45:38] 2025-11-21 20:44:11,748 | INFO     | mean y: 2275465.9561304837
[2025-11-21 21:45:38] 2025-11-21 20:44:11,748 | INFO     | intersect: -4464216684.529475
[2025-11-21 21:45:38] 2025-11-21 20:44:11,749 | INFO     | chi2: 1.5665462811599253
[2025-11-21 21:45:38] 2025-11-21 20:44:11,750 | INFO     | current chi2=1.5665462811599253 (change=1.0867972303062479 %)
[2025-11-21 21:45:38] 2025-11-21 20:44:11,750 | INFO     | left removable region: 20
[2025-11-21 21:45:38] 2025-11-21 20:44:11,751 | INFO     | sum of square deviations: 202785558437.0
[2025-11-21 21:45:38] 2025-11-21 20:44:11,769 | INFO     | sum of deviations: 642431695113.0
[2025-11-21 21:45:38] 2025-11-21 20:44:11,769 | INFO     | mean x: 1763730663.5
[2025-11-21 21:45:38] 2025-11-21 20:44:11,769 | INFO     | mean y: 2283468.486175115
[2025-11-21 21:45:38] 2025-11-21 20:44:11,769 | INFO     | intersect: -5585276556.046329
[2025-11-21 21:45:38] 2025-11-21 20:44:11,770 | INFO     | chi2: 0.0793055852492515
[2025-11-21 21:45:38] 2025-11-21 20:44:11,770 | INFO     | current memory leak: 3.17 B/s (using 868 data points, chi2=0.08)
[2025-11-21 21:45:38] 2025-11-21 20:44:11,771 | INFO     | could have reported an average CPU frequency of 2705 MHz (34 samples)
[2025-11-21 21:45:38] 2025-11-21 20:44:11,771 | INFO     | ..............................
[2025-11-21 21:45:38] 2025-11-21 20:44:11,772 | INFO     | . Timing measurements:
[2025-11-21 21:45:38] 2025-11-21 20:44:11,772 | INFO     | . get job = 0 s
[2025-11-21 21:45:38] 2025-11-21 20:44:11,772 | INFO     | . initial setup = 1 s
[2025-11-21 21:45:38] 2025-11-21 20:44:11,772 | INFO     | . payload setup = 9 s
[2025-11-21 21:45:38] 2025-11-21 20:44:11,772 | INFO     | . stage-in = 0 s
[2025-11-21 21:45:38] 2025-11-21 20:44:11,772 | INFO     | . payload execution = 54844 s
[2025-11-21 21:45:38] 2025-11-21 20:44:11,772 | INFO     | . stage-out = 2 s
[2025-11-21 21:45:38] 2025-11-21 20:44:11,772 | INFO     | . log creation = 0 s
[2025-11-21 21:45:38] 2025-11-21 20:44:11,772 | INFO     | ..............................
[2025-11-21 21:45:38] 2025-11-21 20:44:11,869 | INFO     | 
[2025-11-21 21:45:38] 2025-11-21 20:44:11,869 | INFO     | job summary report
[2025-11-21 21:45:38] 2025-11-21 20:44:11,869 | INFO     | --------------------------------------------------
[2025-11-21 21:45:38] 2025-11-21 20:44:11,869 | INFO     | PanDA job id: 6893874616
[2025-11-21 21:45:38] 2025-11-21 20:44:11,870 | INFO     | task id: 47523449
[2025-11-21 21:45:38] 2025-11-21 20:44:11,870 | INFO     | errors: (none)
[2025-11-21 21:45:38] 2025-11-21 20:44:11,870 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 21:45:38] 2025-11-21 20:44:11,870 | INFO     | pilot state: finished 
[2025-11-21 21:45:38] 2025-11-21 20:44:11,870 | INFO     | transexitcode: 0
[2025-11-21 21:45:38] 2025-11-21 20:44:11,870 | INFO     | exeerrorcode: 0
[2025-11-21 21:45:38] 2025-11-21 20:44:11,870 | INFO     | exeerrordiag: 
[2025-11-21 21:45:38] 2025-11-21 20:44:11,870 | INFO     | exitcode: 0
[2025-11-21 21:45:38] 2025-11-21 20:44:11,870 | INFO     | exitmsg: OK
[2025-11-21 21:45:38] 2025-11-21 20:44:11,870 | INFO     | cpuconsumptiontime: 217311 s
[2025-11-21 21:45:38] 2025-11-21 20:44:11,870 | INFO     | nevents: 1000
[2025-11-21 21:45:38] 2025-11-21 20:44:11,871 | INFO     | neventsw: 0
[2025-11-21 21:45:38] 2025-11-21 20:44:11,871 | INFO     | pid: 791961
[2025-11-21 21:45:38] 2025-11-21 20:44:11,871 | INFO     | pgrp: 791961
[2025-11-21 21:45:38] 2025-11-21 20:44:11,871 | INFO     | corecount: 4
[2025-11-21 21:45:38] 2025-11-21 20:44:11,871 | INFO     | event service: False
[2025-11-21 21:45:38] 2025-11-21 20:44:11,871 | INFO     | sizes: {0: 2298818, 7: 2299080, 11: 2299108, 54857: 2351703, 54860: 2360721, 54861: 2360777, 54868: 2361151}
[2025-11-21 21:45:38] 2025-11-21 20:44:11,871 | INFO     | --------------------------------------------------
[2025-11-21 21:45:38] 2025-11-21 20:44:11,871 | INFO     | 
[2025-11-21 21:45:38] 2025-11-21 20:44:11,872 | INFO     | executing command: ls -lF /scratch/boinc/var/slot100/slots/1
[2025-11-21 21:45:38] 2025-11-21 20:44:11,899 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 21:45:38] 2025-11-21 20:44:11,900 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 21:45:38] 2025-11-21 20:44:11,900 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 21:45:38] 2025-11-21 20:44:11,900 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 21:45:38] 2025-11-21 20:44:11,900 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 21:45:38] 2025-11-21 20:44:11,900 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 21:45:38] 2025-11-21 20:44:11,900 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 21:45:38] 2025-11-21 20:44:11,901 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 21:45:38] 2025-11-21 20:44:11,901 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 21:45:38] 2025-11-21 20:44:11,901 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 21:45:38] 2025-11-21 20:44:11,901 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 21:45:38] 2025-11-21 20:44:11,901 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 21:45:38] 2025-11-21 20:44:11,901 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 21:45:38] 2025-11-21 20:44:11,901 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 21:45:38] 2025-11-21 20:44:11,901 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 21:45:38] 2025-11-21 20:44:11,901 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 21:45:38] 2025-11-21 20:44:11,901 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 21:45:38] 2025-11-21 20:44:11,901 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 21:45:38] 2025-11-21 20:44:11,902 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 21:45:38] 2025-11-21 20:44:11,902 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 21:45:38] 2025-11-21 20:44:11,902 | INFO     | job 6893874616 has completed (purged errors)
[2025-11-21 21:45:38] 2025-11-21 20:44:11,902 | INFO     | overall cleanup function is called
[2025-11-21 21:45:38] 2025-11-21 20:44:11,940 | INFO     | PID=782221 has CPU usage=25.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 21:45:38] 2025-11-21 20:44:11,940 | INFO     | .. there are 7 such processes running
[2025-11-21 21:45:38] 2025-11-21 20:44:12,926 | INFO     | --- collectZombieJob: --- 10, [791961]
[2025-11-21 21:45:38] 2025-11-21 20:44:12,927 | INFO     | zombie collector waiting for pid 791961
[2025-11-21 21:45:38] 2025-11-21 20:44:12,927 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 21:45:38] 2025-11-21 20:44:12,927 | INFO     | collected zombie processes
[2025-11-21 21:45:38] 2025-11-21 20:44:12,927 | INFO     | will attempt to kill all subprocesses of pid=791961
[2025-11-21 21:45:38] 2025-11-21 20:44:13,747 | INFO     | process IDs to be killed: [791961] (in reverse order)
[2025-11-21 21:45:38] 2025-11-21 20:44:13,991 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 21:45:38] 2025-11-21 20:44:13,992 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 21:45:38] 2025-11-21 20:44:14,023 | INFO     | did not find any defunct processes belonging to 791961
[2025-11-21 21:45:38] 2025-11-21 20:44:14,054 | INFO     | did not find any defunct processes belonging to 791961
[2025-11-21 21:45:38] 2025-11-21 20:44:14,056 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 21:45:38] 2025-11-21 20:44:14,056 | INFO     | ready for new job
[2025-11-21 21:45:38] 2025-11-21 20:44:14,056 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 21:45:38] 2025-11-21 20:44:14,063 | INFO     | ***************************************
[2025-11-21 21:45:38] 2025-11-21 20:44:14,063 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 21:45:38] 2025-11-21 20:44:14,063 | INFO     | ***************************************
[2025-11-21 21:45:38] 2025-11-21 20:44:14,063 | INFO     | 
[2025-11-21 21:45:38] 2025-11-21 20:44:14,071 | INFO     | architecture information:
[2025-11-21 21:45:38] 2025-11-21 20:44:14,072 | INFO     | executing command: cat /etc/os-release
[2025-11-21 21:45:38] 2025-11-21 20:44:14,096 | INFO     | cat /etc/os-release:
[2025-11-21 21:45:38] NAME="CentOS Linux"
[2025-11-21 21:45:38] VERSION="7 (Core)"
[2025-11-21 21:45:38] ID="centos"
[2025-11-21 21:45:38] ID_LIKE="rhel fedora"
[2025-11-21 21:45:38] VERSION_ID="7"
[2025-11-21 21:45:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 21:45:38] ANSI_COLOR="0;31"
[2025-11-21 21:45:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 21:45:38] HOME_URL="https://www.centos.org/"
[2025-11-21 21:45:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 21:45:38] 
[2025-11-21 21:45:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 21:45:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 21:45:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 21:45:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 21:45:38] 
[2025-11-21 21:45:38] 2025-11-21 20:44:14,096 | INFO     | ***************************************
[2025-11-21 21:45:38] 2025-11-21 20:44:14,599 | INFO     | executing command: df -mP /scratch/boinc/var/slot100/slots/1
[2025-11-21 21:45:38] 2025-11-21 20:44:14,622 | INFO     | sufficient remaining disk space (3312971677696 B)
[2025-11-21 21:45:38] 2025-11-21 20:44:14,623 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 21:45:38] 2025-11-21 20:44:14,623 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 21:45:38] 2025-11-21 20:44:14,623 | INFO     | update_server=False
[2025-11-21 21:45:38] 2025-11-21 20:44:14,623 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 21:45:38] 2025-11-21 20:44:14,624 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 21:45:38] 2025-11-21 20:44:14,746 | INFO     | all job control threads have been joined
[2025-11-21 21:45:38] 2025-11-21 20:44:15,041 | INFO     | all data control threads have been joined
[2025-11-21 21:45:38] 2025-11-21 20:44:15,061 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 21:45:38] 2025-11-21 20:44:15,061 | INFO     | aborting loop
[2025-11-21 21:45:38] 2025-11-21 20:44:15,397 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 21:45:38] 2025-11-21 20:44:15,584 | INFO     | all payload control threads have been joined
[2025-11-21 21:45:38] 2025-11-21 20:44:15,629 | INFO     | [job] retrieve thread has finished
[2025-11-21 21:45:38] 2025-11-21 20:44:15,752 | INFO     | [job] control thread has finished
[2025-11-21 21:45:38] 2025-11-21 20:44:16,046 | INFO     | [data] control thread has finished
[2025-11-21 21:45:38] 2025-11-21 20:44:16,066 | INFO     | [job] job monitor thread has finished
[2025-11-21 21:45:38] 2025-11-21 20:44:16,366 | INFO     | [payload] validate_post thread has finished
[2025-11-21 21:45:38] 2025-11-21 20:44:16,590 | INFO     | [payload] control thread has finished
[2025-11-21 21:45:38] 2025-11-21 20:44:16,630 | INFO     | [data] copytool_out thread has finished
[2025-11-21 21:45:38] 2025-11-21 20:44:16,640 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 21:45:38] 2025-11-21 20:44:16,803 | INFO     | [job] validate thread has finished
[2025-11-21 21:45:38] 2025-11-21 20:44:16,827 | INFO     | [payload] failed_post thread has finished
[2025-11-21 21:45:38] 2025-11-21 20:44:16,864 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 21:45:38] 2025-11-21 20:44:16,876 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 21:45:38] 2025-11-21 20:44:16,925 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 21:45:38] 2025-11-21 20:44:17,068 | INFO     | [data] copytool_in thread has finished
[2025-11-21 21:45:38] 2025-11-21 20:44:17,879 | INFO     | [job] queue monitor thread has finished
[2025-11-21 21:45:38] 2025-11-21 20:44:19,403 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 21:45:38] 2025-11-21 20:44:24,121 [wrapper] supervise_pilot (15 min periods counter: 62)
[2025-11-21 21:45:38] 2025-11-21 20:44:25,070 | INFO     | job.realtimelogging is not enabled
[2025-11-21 21:45:38] 2025-11-21 20:44:26,072 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 21:45:38] 2025-11-21 20:44:45,007 | INFO     | PID=782221 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-21 21:45:38] 2025-11-21 20:44:45,007 | INFO     | .. there are 7 such processes running
[2025-11-21 21:45:38] 2025-11-21 20:44:45,008 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 21:45:38] 2025-11-21 20:44:45,008 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 21:45:38] 2025-11-21 20:44:45,008 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 21:45:38] 2025-11-21 20:44:55,132 | INFO     | [monitor] cgroup control has ended
[2025-11-21 21:45:38] 2025-11-21 20:44:55,567 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23065714276160)>', '<ExcThread(monitor, started 23065478006528)>']
[2025-11-21 21:45:38] 2025-11-21 20:44:56,063 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 21:45:38] 2025-11-21 20:44:56,064 | INFO     | [monitor] control thread has ended
[2025-11-21 21:45:38] 2025-11-21 20:45:00,591 | INFO     | all workflow threads have been joined
[2025-11-21 21:45:38] 2025-11-21 20:45:00,592 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 21:45:38] 2025-11-21 20:45:00,592 | INFO     | traces error code: 0
[2025-11-21 21:45:38] 2025-11-21 20:45:00,592 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 21:45:38] 2025-11-21 20:45:00,735 [wrapper] ==== pilot stdout END ====
[2025-11-21 21:45:38] 2025-11-21 20:45:00,739 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 21:45:38] 2025-11-21 20:45:00,743 [wrapper] pilotpid: 782221
[2025-11-21 21:45:38] 2025-11-21 20:45:00,747 [wrapper] Pilot exit status: 0
[2025-11-21 21:45:38] 2025-11-21 20:45:00,762 [wrapper] pandaids: 6893874616
[2025-11-21 21:45:38] 2025-11-21 20:45:00,940 [wrapper] cleanup supervisor_pilot 2160744 782222
[2025-11-21 21:45:38] 2025-11-21 20:45:00,945 [wrapper] Test setup, not cleaning
[2025-11-21 21:45:38] 2025-11-21 20:45:00,949 [wrapper] apfmon messages muted
[2025-11-21 21:45:38] 2025-11-21 20:45:00,953 [wrapper] ==== wrapper stdout END ====
[2025-11-21 21:45:38] 2025-11-21 20:45:00,957 [wrapper] ==== wrapper stderr END ====
[2025-11-21 21:45:38]  *** Error codes and diagnostics ***
[2025-11-21 21:45:38]     "exeErrorCode": 0,
[2025-11-21 21:45:38]     "exeErrorDiag": "",
[2025-11-21 21:45:38]     "pilotErrorCode": 0,
[2025-11-21 21:45:38]     "pilotErrorDiag": "",
[2025-11-21 21:45:38]  *** Listing of results directory ***
[2025-11-21 21:45:38] total 1319352
[2025-11-21 21:45:38] -rw-r--r-- 1 boinc boinc    576529 Nov 20 17:08 pilot3.tar.gz
[2025-11-21 21:45:38] -rw-r--r-- 1 boinc boinc      5112 Nov 20 17:12 queuedata.json
[2025-11-21 21:45:38] -rwx------ 1 boinc boinc     36292 Nov 20 17:13 runpilot2-wrapper.sh
[2025-11-21 21:45:38] -rw-r--r-- 1 boinc boinc       100 Nov 21 05:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 21:45:38] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 05:01 run_atlas
[2025-11-21 21:45:38] -rw-r--r-- 1 boinc boinc       105 Nov 21 05:01 job.xml
[2025-11-21 21:45:38] -rw-r--r-- 1 boinc boinc      6686 Nov 21 06:29 init_data.xml
[2025-11-21 21:45:38] -rw-r--r-- 2 boinc boinc 411477039 Nov 21 06:29 EVNT.47493127._000727.pool.root.1
[2025-11-21 21:45:38] -rw-r--r-- 2 boinc boinc     15847 Nov 21 06:29 start_atlas.sh
[2025-11-21 21:45:38] drwxrwx--x 2 boinc boinc      4096 Nov 21 06:29 shared
[2025-11-21 21:45:38] -rw-r--r-- 2 boinc boinc    590106 Nov 21 06:29 input.tar.gz
[2025-11-21 21:45:38] -rw-r--r-- 1 boinc boinc         0 Nov 21 06:29 boinc_lockfile
[2025-11-21 21:45:38] -rw-r--r-- 1 boinc boinc      2785 Nov 21 06:29 pandaJob.out
[2025-11-21 21:45:38] -rw------- 1 boinc boinc    989817 Nov 21 06:29 agis_schedconf.cvmfs.json
[2025-11-21 21:45:38] drwx------ 5 boinc boinc      4096 Nov 21 06:29 pilot3
[2025-11-21 21:45:38] -rw-r--r-- 1 boinc boinc       532 Nov 21 21:37 boinc_task_state.xml
[2025-11-21 21:45:38] -rw------- 1 boinc boinc 917156997 Nov 21 21:43 HITS.47523449._007269.pool.root.1
[2025-11-21 21:45:38] -rw------- 1 boinc boinc      1039 Nov 21 21:43 memory_monitor_summary.json
[2025-11-21 21:45:38] -rw------- 1 boinc boinc   1526164 Nov 21 21:44 agis_ddmendpoints.agis.ALL.json
[2025-11-21 21:45:38] -rw------- 1 boinc boinc   1643334 Nov 21 21:44 log.47523449._007269.job.log.tgz.1
[2025-11-21 21:45:38] -rw------- 1 boinc boinc      8608 Nov 21 21:44 heartbeat.json
[2025-11-21 21:45:38] -rw------- 1 boinc boinc        95 Nov 21 21:44 pilot_heartbeat.json
[2025-11-21 21:45:38] -rw------- 1 boinc boinc      4906 Nov 21 21:45 pilotlog.txt
[2025-11-21 21:45:38] -rw------- 1 boinc boinc   7584639 Nov 21 21:45 log.47523449._007269.job.log.1
[2025-11-21 21:45:38] -rw------- 1 boinc boinc       353 Nov 21 21:45 output.list
[2025-11-21 21:45:38] -rw-r--r-- 1 boinc boinc       620 Nov 21 21:45 runtime_log
[2025-11-21 21:45:38] -rw------- 1 boinc boinc   9246720 Nov 21 21:45 result.tar.gz
[2025-11-21 21:45:38] -rw-r--r-- 1 boinc boinc      9223 Nov 21 21:45 runtime_log.err
[2025-11-21 21:45:38] -rw------- 1 boinc boinc       670 Nov 21 21:45 BHPODm3SMg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmzHIKDm1Lh4rn.diag
[2025-11-21 21:45:38] -rw-r--r-- 1 boinc boinc        28 Nov 21 21:45 wrapper_checkpoint.txt
[2025-11-21 21:45:38] -rw-r--r-- 1 boinc boinc      8192 Nov 21 21:45 boinc_mmap_file
[2025-11-21 21:45:38] -rw-r--r-- 1 boinc boinc     21085 Nov 21 21:45 stderr.txt
[2025-11-21 21:45:38] HITS file was successfully produced:
[2025-11-21 21:45:38] -rw------- 1 boinc boinc 917156997 Nov 21 21:43 shared/HITS.pool.root.1
[2025-11-21 21:45:38]  *** Contents of shared directory: ***
[2025-11-21 21:45:38] total 1307136
[2025-11-21 21:45:38] -rw-r--r-- 2 boinc boinc 411477039 Nov 21 06:29 ATLAS.root_0
[2025-11-21 21:45:38] -rw-r--r-- 2 boinc boinc     15847 Nov 21 06:29 start_atlas.sh
[2025-11-21 21:45:38] -rw-r--r-- 2 boinc boinc    590106 Nov 21 06:29 input.tar.gz
[2025-11-21 21:45:38] -rw------- 1 boinc boinc 917156997 Nov 21 21:43 HITS.pool.root.1
[2025-11-21 21:45:38] -rw------- 1 boinc boinc   9246720 Nov 21 21:45 result.tar.gz
21:45:40 (778190): run_atlas exited; CPU time 220078.827118
21:45:40 (778190): called boinc_finish(0)

</stderr_txt>
]]>

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