Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:26:43 (1547675): wrapper (7.7.26015): starting
05:26:43 (1547675): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 05:26:43] Arguments: --nthreads 8
[2025-11-21 05:26:43] Threads: 8
[2025-11-21 05:26:43] Checking for CVMFS
[2025-11-21 05:26:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 05:26:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 05:26:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 05:26:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 05:26:44] 2.13.2.0 6867 26520 254056 153121 1 81 22535704 40960000 4717 16776704 0 20385752 99.598 18788495 29154 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 05:26:44] CVMFS is ok
[2025-11-21 05:26:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 05:26:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 05:26:44] Further information can be found at the LHC@home message board.
[2025-11-21 05:26:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 05:26:44] Checking for apptainer binary...
[2025-11-21 05:26:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 05:26:44] Running /usr/bin/apptainer --version
[2025-11-21 05:26:44] apptainer version 1.4.4-1.el9
[2025-11-21 05:26:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 05:26:44] c-211-11.aglt2.org
[2025-11-21 05:26:44] apptainer works
[2025-11-21 05:26:44] Set ATHENA_PROC_NUMBER=8
[2025-11-21 05:26:44] Set ATHENA_CORE_NUMBER=8
[2025-11-21 05:26:44] Starting ATLAS job with PandaID=6893874733
[2025-11-21 05:26:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 04:30:54]  *** The last 200 lines of the pilot log: ***
[2025-11-22 04:30:54] 2025-11-22 08:22:00,276 | INFO     | time since job start (78906s) is within the limit (172800.0s)
[2025-11-22 04:30:54] 2025-11-22 08:22:00,757 | INFO     | monitor loop #4782: job 0:6893874733 is in state 'finished'
[2025-11-22 04:30:54] 2025-11-22 08:22:00,757 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 04:30:54] 2025-11-22 08:22:02,283 | INFO     | time since job start (78908s) is within the limit (172800.0s)
[2025-11-22 04:30:54] 2025-11-22 08:22:03,262 | INFO     | monitor loop #4783: job 0:6893874733 is in state 'finished'
[2025-11-22 04:30:54] 2025-11-22 08:22:03,262 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 04:30:54] 2025-11-22 08:22:04,030 | INFO     | PID=1551573 has CPU usage=14.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-22 04:30:54] 2025-11-22 08:22:04,031 | INFO     | .. there are 11 such processes running
[2025-11-22 04:30:54] 2025-11-22 08:22:05,031 | INFO     | time since job start (78911s) is within the limit (172800.0s)
[2025-11-22 04:30:54] 2025-11-22 08:22:05,767 | INFO     | monitor loop #4784: job 0:6893874733 is in state 'finished'
[2025-11-22 04:30:54] 2025-11-22 08:22:05,767 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 04:30:54] 2025-11-22 08:22:07,038 | INFO     | time since job start (78913s) is within the limit (172800.0s)
[2025-11-22 04:30:54] 2025-11-22 08:22:08,276 | INFO     | monitor loop #4785: job 0:6893874733 is in state 'finished'
[2025-11-22 04:30:54] 2025-11-22 08:22:08,276 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 04:30:54] 2025-11-22 08:22:09,046 | INFO     | time since job start (78915s) is within the limit (172800.0s)
[2025-11-22 04:30:54] 2025-11-22 08:22:09,339 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 04:30:54] 2025-11-22 08:22:09,388 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2528.0304374999996
[2025-11-22 04:30:54] 2025-11-22 08:22:09,407 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6893874733/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 04:30:54] 2025-11-22 08:22:09,408 | INFO     | extracted standard info from prmon json
[2025-11-22 04:30:54] 2025-11-22 08:22:09,408 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 04:30:54] 2025-11-22 08:22:09,408 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 04:30:54] 2025-11-22 08:22:09,530 | INFO     | fitting pss+swap vs Time
[2025-11-22 04:30:54] 2025-11-22 08:22:09,533 | INFO     | sum of square deviations: 670357120600.7716
[2025-11-22 04:30:54] 2025-11-22 08:22:09,619 | INFO     | sum of deviations: -885221597158.6082
[2025-11-22 04:30:54] 2025-11-22 08:22:09,620 | INFO     | mean x: 1763760248.7556071
[2025-11-22 04:30:54] 2025-11-22 08:22:09,620 | INFO     | mean y: 2962229.1183294663
[2025-11-22 04:30:54] 2025-11-22 08:22:09,620 | INFO     | intersect: 2332047154.790566
[2025-11-22 04:30:54] 2025-11-22 08:22:09,622 | INFO     | chi2: 31.611538292294092
[2025-11-22 04:30:54] 2025-11-22 08:22:09,624 | INFO     | sum of square deviations: 662612447069.975
[2025-11-22 04:30:54] 2025-11-22 08:22:09,677 | INFO     | sum of deviations: -367789365762.4579
[2025-11-22 04:30:54] 2025-11-22 08:22:09,681 | INFO     | mean x: 1763760096.2701864
[2025-11-22 04:30:54] 2025-11-22 08:22:09,682 | INFO     | mean y: 2972415.777173913
[2025-11-22 04:30:54] 2025-11-22 08:22:09,682 | INFO     | intersect: 981964298.6384366
[2025-11-22 04:30:54] 2025-11-22 08:22:09,684 | INFO     | chi2: 27.065262787184274
[2025-11-22 04:30:54] 2025-11-22 08:22:09,684 | INFO     | current chi2=27.065262787184274 (change=14.381696528251709 %)
[2025-11-22 04:30:54] 2025-11-22 08:22:09,685 | INFO     | right removable region: 1287
[2025-11-22 04:30:54] 2025-11-22 08:22:09,686 | INFO     | sum of square deviations: 662609484909.9751
[2025-11-22 04:30:54] 2025-11-22 08:22:09,764 | INFO     | sum of deviations: -1231448000495.9385
[2025-11-22 04:30:54] 2025-11-22 08:22:09,764 | INFO     | mean x: 1763760401.2701864
[2025-11-22 04:30:54] 2025-11-22 08:22:09,765 | INFO     | mean y: 2969037.8245341615
[2025-11-22 04:30:54] 2025-11-22 08:22:09,765 | INFO     | intersect: 3280886527.6310368
[2025-11-22 04:30:54] 2025-11-22 08:22:09,767 | INFO     | chi2: 29.61448576255176
[2025-11-22 04:30:54] 2025-11-22 08:22:09,767 | INFO     | current chi2=29.61448576255176 (change=6.317479748301754 %)
[2025-11-22 04:30:54] 2025-11-22 08:22:09,767 | INFO     | left removable region: 10
[2025-11-22 04:30:54] 2025-11-22 08:22:09,769 | INFO     | sum of square deviations: 645779024548.0793
[2025-11-22 04:30:54] 2025-11-22 08:22:09,816 | INFO     | sum of deviations: -703453611672.5815
[2025-11-22 04:30:54] 2025-11-22 08:22:09,816 | INFO     | mean x: 1763760370.8003132
[2025-11-22 04:30:54] 2025-11-22 08:22:09,817 | INFO     | mean y: 2982580.9506656225
[2025-11-22 04:30:54] 2025-11-22 08:22:09,817 | INFO     | intersect: 1924264561.0098958
[2025-11-22 04:30:54] 2025-11-22 08:22:09,819 | INFO     | chi2: 24.323611569767824
[2025-11-22 04:30:54] 2025-11-22 08:22:09,819 | INFO     | current memory leak: -1.09 B/s (using 1277 data points, chi2=24.32)
[2025-11-22 04:30:54] 2025-11-22 08:22:09,820 | INFO     | could have reported an average CPU frequency of 2589 MHz (46 samples)
[2025-11-22 04:30:54] 2025-11-22 08:22:09,820 | INFO     | ..............................
[2025-11-22 04:30:54] 2025-11-22 08:22:09,820 | INFO     | . Timing measurements:
[2025-11-22 04:30:54] 2025-11-22 08:22:09,821 | INFO     | . get job = 0 s
[2025-11-22 04:30:54] 2025-11-22 08:22:09,821 | INFO     | . initial setup = 2 s
[2025-11-22 04:30:54] 2025-11-22 08:22:09,821 | INFO     | . payload setup = 5 s
[2025-11-22 04:30:54] 2025-11-22 08:22:09,821 | INFO     | . stage-in = 0 s
[2025-11-22 04:30:54] 2025-11-22 08:22:09,821 | INFO     | . payload execution = 78860 s
[2025-11-22 04:30:54] 2025-11-22 08:22:09,821 | INFO     | . stage-out = 7 s
[2025-11-22 04:30:54] 2025-11-22 08:22:09,821 | INFO     | . log creation = 2 s
[2025-11-22 04:30:54] 2025-11-22 08:22:09,821 | INFO     | ..............................
[2025-11-22 04:30:54] 2025-11-22 08:22:10,245 | INFO     | 
[2025-11-22 04:30:54] 2025-11-22 08:22:10,245 | INFO     | job summary report
[2025-11-22 04:30:54] 2025-11-22 08:22:10,246 | INFO     | --------------------------------------------------
[2025-11-22 04:30:54] 2025-11-22 08:22:10,246 | INFO     | PanDA job id: 6893874733
[2025-11-22 04:30:54] 2025-11-22 08:22:10,246 | INFO     | task id: 47523449
[2025-11-22 04:30:54] 2025-11-22 08:22:10,246 | INFO     | errors: (none)
[2025-11-22 04:30:54] 2025-11-22 08:22:10,246 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 04:30:54] 2025-11-22 08:22:10,246 | INFO     | pilot state: finished 
[2025-11-22 04:30:54] 2025-11-22 08:22:10,246 | INFO     | transexitcode: 0
[2025-11-22 04:30:54] 2025-11-22 08:22:10,247 | INFO     | exeerrorcode: 0
[2025-11-22 04:30:54] 2025-11-22 08:22:10,247 | INFO     | exeerrordiag: 
[2025-11-22 04:30:54] 2025-11-22 08:22:10,247 | INFO     | exitcode: 0
[2025-11-22 04:30:54] 2025-11-22 08:22:10,247 | INFO     | exitmsg: OK
[2025-11-22 04:30:54] 2025-11-22 08:22:10,247 | INFO     | cpuconsumptiontime: 317874 s
[2025-11-22 04:30:54] 2025-11-22 08:22:10,247 | INFO     | nevents: 1000
[2025-11-22 04:30:54] 2025-11-22 08:22:10,247 | INFO     | neventsw: 0
[2025-11-22 04:30:54] 2025-11-22 08:22:10,247 | INFO     | pid: 1557958
[2025-11-22 04:30:54] 2025-11-22 08:22:10,248 | INFO     | pgrp: 1557958
[2025-11-22 04:30:54] 2025-11-22 08:22:10,248 | INFO     | corecount: 8
[2025-11-22 04:30:54] 2025-11-22 08:22:10,248 | INFO     | event service: False
[2025-11-22 04:30:54] 2025-11-22 08:22:10,248 | INFO     | sizes: {0: 2298585, 1: 2298784, 4: 2299046, 12: 2299074, 78870: 2359909, 78871: 2359908, 78879: 2369170, 78901: 2369360}
[2025-11-22 04:30:54] 2025-11-22 08:22:10,248 | INFO     | --------------------------------------------------
[2025-11-22 04:30:54] 2025-11-22 08:22:10,248 | INFO     | 
[2025-11-22 04:30:54] 2025-11-22 08:22:10,248 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-22 04:30:54] 2025-11-22 08:22:10,300 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 04:30:54] 2025-11-22 08:22:10,300 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 04:30:54] 2025-11-22 08:22:10,301 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 04:30:54] 2025-11-22 08:22:10,301 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 04:30:54] 2025-11-22 08:22:10,301 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 04:30:54] 2025-11-22 08:22:10,301 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 04:30:54] 2025-11-22 08:22:10,301 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 04:30:54] 2025-11-22 08:22:10,301 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 04:30:54] 2025-11-22 08:22:10,301 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 04:30:54] 2025-11-22 08:22:10,302 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 04:30:54] 2025-11-22 08:22:10,302 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 04:30:54] 2025-11-22 08:22:10,302 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 04:30:54] 2025-11-22 08:22:10,302 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 04:30:54] 2025-11-22 08:22:10,302 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 04:30:54] 2025-11-22 08:22:10,302 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 04:30:54] 2025-11-22 08:22:10,302 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 04:30:54] 2025-11-22 08:22:10,302 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 04:30:54] 2025-11-22 08:22:10,303 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 04:30:54] 2025-11-22 08:22:10,303 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 04:30:54] 2025-11-22 08:22:10,303 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 04:30:54] 2025-11-22 08:22:10,304 | INFO     | job 6893874733 has completed (purged errors)
[2025-11-22 04:30:54] 2025-11-22 08:22:10,305 | INFO     | overall cleanup function is called
[2025-11-22 04:30:54] 2025-11-22 08:22:11,323 | INFO     | --- collectZombieJob: --- 10, [1557958]
[2025-11-22 04:30:54] 2025-11-22 08:22:11,323 | INFO     | zombie collector waiting for pid 1557958
[2025-11-22 04:30:54] 2025-11-22 08:22:11,324 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 04:30:54] 2025-11-22 08:22:11,324 | INFO     | collected zombie processes
[2025-11-22 04:30:54] 2025-11-22 08:22:11,324 | INFO     | will attempt to kill all subprocesses of pid=1557958
[2025-11-22 04:30:54] 2025-11-22 08:22:12,455 | INFO     | process IDs to be killed: [1557958] (in reverse order)
[2025-11-22 04:30:54] 2025-11-22 08:22:12,618 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 04:30:54] 2025-11-22 08:22:12,618 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 04:30:54] 2025-11-22 08:22:12,630 | INFO     | did not find any defunct processes belonging to 1557958
[2025-11-22 04:30:54] 2025-11-22 08:22:12,641 | INFO     | did not find any defunct processes belonging to 1557958
[2025-11-22 04:30:54] 2025-11-22 08:22:12,643 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 04:30:54] 2025-11-22 08:22:12,643 | INFO     | ready for new job
[2025-11-22 04:30:54] 2025-11-22 08:22:12,643 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 04:30:54] 2025-11-22 08:22:12,649 | INFO     | ***************************************
[2025-11-22 04:30:54] 2025-11-22 08:22:12,649 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 04:30:54] 2025-11-22 08:22:12,649 | INFO     | ***************************************
[2025-11-22 04:30:54] 2025-11-22 08:22:12,649 | INFO     | 
[2025-11-22 04:30:54] 2025-11-22 08:22:12,652 | INFO     | architecture information:
[2025-11-22 04:30:54] 2025-11-22 08:22:12,654 | INFO     | executing command: cat /etc/os-release
[2025-11-22 04:30:54] 2025-11-22 08:22:12,686 | INFO     | cat /etc/os-release:
[2025-11-22 04:30:54] NAME="CentOS Linux"
[2025-11-22 04:30:54] VERSION="7 (Core)"
[2025-11-22 04:30:54] ID="centos"
[2025-11-22 04:30:54] ID_LIKE="rhel fedora"
[2025-11-22 04:30:54] VERSION_ID="7"
[2025-11-22 04:30:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 04:30:54] ANSI_COLOR="0;31"
[2025-11-22 04:30:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 04:30:54] HOME_URL="https://www.centos.org/"
[2025-11-22 04:30:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 04:30:54] 
[2025-11-22 04:30:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 04:30:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 04:30:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 04:30:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 04:30:54] 
[2025-11-22 04:30:54] 2025-11-22 08:22:12,687 | INFO     | ***************************************
[2025-11-22 04:30:54] 2025-11-22 08:22:13,190 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-22 04:30:54] 2025-11-22 08:22:13,210 | INFO     | sufficient remaining disk space (57226035200 B)
[2025-11-22 04:30:54] 2025-11-22 08:22:13,210 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 04:30:54] 2025-11-22 08:22:13,211 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 04:30:54] 2025-11-22 08:22:13,211 | INFO     | update_server=False
[2025-11-22 04:30:54] 2025-11-22 08:22:13,211 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 04:30:54] 2025-11-22 08:22:13,211 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 04:30:54] 2025-11-22 08:22:13,325 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 04:30:54] 2025-11-22 08:22:13,325 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 04:30:54] 2025-11-22 08:22:13,325 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 04:30:54] 2025-11-22 08:22:13,325 | INFO     | will abort loop
[2025-11-22 04:30:54] 2025-11-22 08:22:13,688 | INFO     | all data control threads have been joined
[2025-11-22 04:30:54] 2025-11-22 08:22:13,838 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 04:30:54] 2025-11-22 08:22:14,154 | INFO     | all job control threads have been joined
[2025-11-22 04:30:54] 2025-11-22 08:22:14,217 | INFO     | [job] retrieve thread has finished
[2025-11-22 04:30:54] 2025-11-22 08:22:14,308 | INFO     | all payload control threads have been joined
[2025-11-22 04:30:54] 2025-11-22 08:22:14,331 | INFO     | [job] job monitor thread has finished
[2025-11-22 04:30:54] 2025-11-22 08:22:14,696 | INFO     | [data] control thread has finished
[2025-11-22 04:30:54] 2025-11-22 08:22:14,697 | INFO     | [payload] failed_post thread has finished
[2025-11-22 04:30:54] 2025-11-22 08:22:14,873 | INFO     | [payload] validate_post thread has finished
[2025-11-22 04:30:54] 2025-11-22 08:22:14,952 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 04:30:54] 2025-11-22 08:22:14,953 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 04:30:54] 2025-11-22 08:22:15,025 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 04:30:54] 2025-11-22 08:22:15,166 | INFO     | [job] control thread has finished
[2025-11-22 04:30:54] 2025-11-22 08:22:15,188 | INFO     | [data] copytool_in thread has finished
[2025-11-22 04:30:54] 2025-11-22 08:22:15,231 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 04:30:54] 2025-11-22 08:22:15,314 | INFO     | [payload] control thread has finished
[2025-11-22 04:30:54] 2025-11-22 08:22:15,644 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 04:30:54] 2025-11-22 08:22:15,645 | INFO     | [job] validate thread has finished
[2025-11-22 04:30:54] 2025-11-22 08:22:15,845 | INFO     | [data] copytool_out thread has finished
[2025-11-22 04:30:54] 2025-11-22 08:22:16,032 | INFO     | [job] queue monitor thread has finished
[2025-11-22 04:30:54] 2025-11-22 08:22:17,218 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 04:30:54] 2025-11-22 08:22:19,705 | INFO     | [monitor] cgroup control has ended
[2025-11-22 04:30:54] 2025-11-22 08:22:20,713 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139693300201280)>', '<ExcThread(monitor, started 139692536231680)>']
[2025-11-22 04:30:54] 2025-11-22 08:22:25,739 | INFO     | all workflow threads have been joined
[2025-11-22 04:30:54] 2025-11-22 08:22:25,739 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 04:30:54] 2025-11-22 08:22:25,740 | INFO     | traces error code: 0
[2025-11-22 04:30:54] 2025-11-22 08:22:25,740 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 04:30:54] 2025-11-22 08:22:42,766 | INFO     | PID=1551573 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 04:30:54] 2025-11-22 08:22:42,766 | INFO     | .. there are 11 such processes running
[2025-11-22 04:30:54] 2025-11-22 08:22:42,767 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 04:30:54] 2025-11-22 08:22:42,767 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 04:30:54] 2025-11-22 08:22:42,768 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 04:30:54] 2025-11-22 08:22:42,768 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 04:30:54] 2025-11-22 08:22:42,768 | INFO     | [monitor] control thread has ended
[2025-11-22 04:30:54] 2025-11-22 08:22:42,958 [wrapper] ==== pilot stdout END ====
[2025-11-22 04:30:54] 2025-11-22 08:22:42,961 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 04:30:54] 2025-11-22 08:22:42,965 [wrapper] pilotpid: 1551573
[2025-11-22 04:30:54] 2025-11-22 08:22:42,968 [wrapper] Pilot exit status: 0
[2025-11-22 04:30:54] 2025-11-22 08:22:43,037 [wrapper] pandaids: 6893874733
[2025-11-22 04:30:54] 2025-11-22 08:22:43,259 [wrapper] cleanup supervisor_pilot 3658340 1551574
[2025-11-22 04:30:54] 2025-11-22 08:22:43,263 [wrapper] Test setup, not cleaning
[2025-11-22 04:30:54] 2025-11-22 08:22:43,266 [wrapper] apfmon messages muted
[2025-11-22 04:30:54] 2025-11-22 08:22:43,269 [wrapper] ==== wrapper stdout END ====
[2025-11-22 04:30:54] 2025-11-22 08:22:43,272 [wrapper] ==== wrapper stderr END ====
[2025-11-22 04:30:54]  *** Error codes and diagnostics ***
[2025-11-22 04:30:54]     "exeErrorCode": 0,
[2025-11-22 04:30:54]     "exeErrorDiag": "",
[2025-11-22 04:30:54]     "pilotErrorCode": 0,
[2025-11-22 04:30:54]     "pilotErrorDiag": "",
[2025-11-22 04:30:54]  *** Listing of results directory ***
[2025-11-22 04:30:54] total 1320808
[2025-11-22 04:30:54] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 11:08 pilot3.tar.gz
[2025-11-22 04:30:54] -rwx------. 1 boincer umatlas     36292 Nov 20 11:25 runpilot2-wrapper.sh
[2025-11-22 04:30:54] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 11:25 queuedata.json
[2025-11-22 04:30:54] -rw-r--r--. 1 boincer umatlas       100 Nov 21 05:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 04:30:54] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 05:26 run_atlas
[2025-11-22 04:30:54] -rw-r--r--. 1 boincer umatlas       105 Nov 21 05:26 job.xml
[2025-11-22 04:30:54] -rw-r--r--. 2 boincer umatlas 411491693 Nov 21 05:26 EVNT.47493127._000735.pool.root.1
[2025-11-22 04:30:54] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 05:26 start_atlas.sh
[2025-11-22 04:30:54] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 05:26 shared
[2025-11-22 04:30:54] -rw-r--r--. 2 boincer umatlas    590099 Nov 21 05:26 input.tar.gz
[2025-11-22 04:30:54] -rw-r--r--. 1 boincer umatlas         0 Nov 21 05:26 boinc_lockfile
[2025-11-22 04:30:54] -rw-r--r--. 1 boincer umatlas      2785 Nov 21 05:26 pandaJob.out
[2025-11-22 04:30:54] -rw-------. 1 boincer umatlas        57 Nov 21 05:26 setup.sh.local
[2025-11-22 04:30:54] -rw-------. 1 boincer umatlas    989817 Nov 21 05:26 agis_schedconf.cvmfs.json
[2025-11-22 04:30:54] drwx------. 5 boincer umatlas      4096 Nov 21 05:26 pilot3
[2025-11-22 04:30:54] -rw-r--r--. 1 boincer umatlas       533 Nov 22 02:23 boinc_task_state.xml
[2025-11-22 04:30:54] -rw-------. 1 boincer umatlas 912458543 Nov 22 03:17 HITS.47523449._007350.pool.root.1
[2025-11-22 04:30:54] -rw-------. 1 boincer umatlas      1058 Nov 22 03:21 memory_monitor_summary.json
[2025-11-22 04:30:54] -rw-------. 1 boincer umatlas   1526164 Nov 22 03:21 agis_ddmendpoints.agis.ALL.json
[2025-11-22 04:30:54] -rw-------. 1 boincer umatlas   2350294 Nov 22 03:21 log.47523449._007350.job.log.tgz.1
[2025-11-22 04:30:54] -rw-------. 1 boincer umatlas      8617 Nov 22 03:22 heartbeat.json
[2025-11-22 04:30:54] -rw-------. 1 boincer umatlas       823 Nov 22 03:22 pilotlog.txt
[2025-11-22 04:30:54] -rw-------. 1 boincer umatlas        95 Nov 22 03:22 pilot_heartbeat.json
[2025-11-22 04:30:54] -rw-------. 1 boincer umatlas   9964647 Nov 22 03:22 log.47523449._007350.job.log.1
[2025-11-22 04:30:54] -rw-------. 1 boincer umatlas       353 Nov 22 03:22 output.list
[2025-11-22 04:30:54] -rw-r--r--. 1 boincer umatlas       620 Nov 22 03:22 runtime_log
[2025-11-22 04:30:54] -rw-------. 1 boincer umatlas  12339200 Nov 22 03:22 result.tar.gz
[2025-11-22 04:30:54] -rw-r--r--. 1 boincer umatlas      9343 Nov 22 03:22 runtime_log.err
[2025-11-22 04:30:54] -rw-------. 1 boincer umatlas       660 Nov 22 03:22 N0EMDmgeMg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmytGKDm1O7X7n.diag
[2025-11-22 04:30:54] -rw-r--r--. 1 boincer umatlas      6616 Nov 22 04:29 init_data.xml
[2025-11-22 04:30:54] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 04:30 boinc_mmap_file
[2025-11-22 04:30:54] -rw-r--r--. 1 boincer umatlas        29 Nov 22 04:30 wrapper_checkpoint.txt
[2025-11-22 04:30:54] -rw-r--r--. 1 boincer umatlas     21823 Nov 22 04:30 stderr.txt
[2025-11-22 04:30:54] HITS file was successfully produced:
[2025-11-22 04:30:54] -rw-------. 1 boincer umatlas 912458543 Nov 22 03:17 shared/HITS.pool.root.1
[2025-11-22 04:30:54]  *** Contents of shared directory: ***
[2025-11-22 04:30:54] total 1305580
[2025-11-22 04:30:54] -rw-r--r--. 2 boincer umatlas 411491693 Nov 21 05:26 ATLAS.root_0
[2025-11-22 04:30:54] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 05:26 start_atlas.sh
[2025-11-22 04:30:54] -rw-r--r--. 2 boincer umatlas    590099 Nov 21 05:26 input.tar.gz
[2025-11-22 04:30:54] -rw-------. 1 boincer umatlas 912458543 Nov 22 03:17 HITS.pool.root.1
[2025-11-22 04:30:54] -rw-------. 1 boincer umatlas  12339200 Nov 22 03:22 result.tar.gz
04:30:56 (1547675): run_atlas exited; CPU time 319653.945132
04:30:56 (1547675): called boinc_finish(0)

</stderr_txt>
]]>

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