Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:21:58 (2608824): wrapper (7.7.26015): starting
03:21:58 (2608824): wrapper: running run_atlas (--nthreads 2)
[2025-11-24 03:21:58] Arguments: --nthreads 2
[2025-11-24 03:21:58] Threads: 2
[2025-11-24 03:21:58] Checking for CVMFS
[2025-11-24 03:21:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 03:21:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 03:21:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 03:21:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 03:21:58] 2.9.2.0 1624889 7580 57404 153229 1 81 19833310 36864001 0 130560 0 2417157 99.895 432694 7125 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 03:21:58] CVMFS is ok
[2025-11-24 03:21:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 03:21:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 03:21:58] Further information can be found at the LHC@home message board.
[2025-11-24 03:21:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 03:21:58] Checking for apptainer binary...
[2025-11-24 03:21:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 03:21:58] Running /usr/bin/apptainer --version
[2025-11-24 03:21:58] apptainer version 1.4.1-1.1
[2025-11-24 03:21:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 03:21:58] thA315
[2025-11-24 03:21:58] apptainer works
[2025-11-24 03:21:58] Set ATHENA_PROC_NUMBER=2
[2025-11-24 03:21:58] Set ATHENA_CORE_NUMBER=2
[2025-11-24 03:21:58] Starting ATLAS job with PandaID=6893857049
[2025-11-24 03:21:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 16:07:23]  *** The last 200 lines of the pilot log: ***
[2025-11-24 16:07:23] 2025-11-24 15:06:42,470 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 16:07:23] 2025-11-24 15:06:42,471 | INFO     | did not find any defunct processes belonging to 2618965
[2025-11-24 16:07:23] 2025-11-24 15:06:42,472 | INFO     | did not find any defunct processes belonging to 2618965
[2025-11-24 16:07:23] 2025-11-24 15:06:42,472 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 16:07:23] 2025-11-24 15:06:42,472 | INFO     | ready for new job
[2025-11-24 16:07:23] 2025-11-24 15:06:42,472 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 16:07:23] 2025-11-24 15:06:42,473 | INFO     | ***************************************
[2025-11-24 16:07:23] 2025-11-24 15:06:42,473 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 16:07:23] 2025-11-24 15:06:42,473 | INFO     | ***************************************
[2025-11-24 16:07:23] 2025-11-24 15:06:42,473 | INFO     | 
[2025-11-24 16:07:23] 2025-11-24 15:06:42,474 | INFO     | architecture information:
[2025-11-24 16:07:23] 2025-11-24 15:06:42,474 | INFO     | executing command: cat /etc/os-release
[2025-11-24 16:07:23] 2025-11-24 15:06:42,482 | INFO     | cat /etc/os-release:
[2025-11-24 16:07:23] NAME="CentOS Linux"
[2025-11-24 16:07:23] VERSION="7 (Core)"
[2025-11-24 16:07:23] ID="centos"
[2025-11-24 16:07:23] ID_LIKE="rhel fedora"
[2025-11-24 16:07:23] VERSION_ID="7"
[2025-11-24 16:07:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 16:07:23] ANSI_COLOR="0;31"
[2025-11-24 16:07:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 16:07:23] HOME_URL="https://www.centos.org/"
[2025-11-24 16:07:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 16:07:23] 
[2025-11-24 16:07:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 16:07:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 16:07:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 16:07:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 16:07:23] 
[2025-11-24 16:07:23] 2025-11-24 15:06:42,482 | INFO     | ***************************************
[2025-11-24 16:07:23] 2025-11-24 15:06:42,986 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-24 16:07:23] 2025-11-24 15:06:42,998 | INFO     | sufficient remaining disk space (502254272512 B)
[2025-11-24 16:07:23] 2025-11-24 15:06:42,998 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 16:07:23] 2025-11-24 15:06:42,998 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 16:07:23] 2025-11-24 15:06:42,998 | INFO     | update_server=False
[2025-11-24 16:07:23] 2025-11-24 15:06:42,998 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 16:07:23] 2025-11-24 15:06:42,998 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 16:07:23] 2025-11-24 15:06:43,085 | INFO     | all payload control threads have been joined
[2025-11-24 16:07:23] 2025-11-24 15:06:43,343 | INFO     | all data control threads have been joined
[2025-11-24 16:07:23] 2025-11-24 15:06:43,346 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 16:07:23] 2025-11-24 15:06:43,347 | INFO     | aborting loop
[2025-11-24 16:07:23] 2025-11-24 15:06:44,004 | INFO     | [job] queue monitor thread has finished
[2025-11-24 16:07:23] 2025-11-24 15:06:44,004 | INFO     | [job] retrieve thread has finished
[2025-11-24 16:07:23] 2025-11-24 15:06:44,092 | INFO     | [payload] control thread has finished
[2025-11-24 16:07:23] 2025-11-24 15:06:44,171 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 16:07:23] 2025-11-24 15:06:44,207 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 16:07:23] 2025-11-24 15:06:44,261 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 16:07:23] 2025-11-24 15:06:44,349 | INFO     | [data] control thread has finished
[2025-11-24 16:07:23] 2025-11-24 15:06:44,352 | INFO     | [job] job monitor thread has finished
[2025-11-24 16:07:23] 2025-11-24 15:06:44,610 | INFO     | all job control threads have been joined
[2025-11-24 16:07:23] 2025-11-24 15:06:44,656 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 16:07:23] 2025-11-24 15:06:44,723 | INFO     | [payload] failed_post thread has finished
[2025-11-24 16:07:23] 2025-11-24 15:06:45,223 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 16:07:23] 2025-11-24 15:06:45,277 | INFO     | [data] copytool_in thread has finished
[2025-11-24 16:07:23] 2025-11-24 15:06:45,428 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 16:07:23] 2025-11-24 15:06:45,432 | INFO     | [job] validate thread has finished
[2025-11-24 16:07:23] 2025-11-24 15:06:45,600 | INFO     | [payload] validate_post thread has finished
[2025-11-24 16:07:23] 2025-11-24 15:06:45,615 | INFO     | [job] control thread has finished
[2025-11-24 16:07:23] 2025-11-24 15:06:46,211 | INFO     | [data] copytool_out thread has finished
[2025-11-24 16:07:23] 2025-11-24 15:06:48,267 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 16:07:23] 2025-11-24 15:07:08,547 [wrapper] supervise_pilot (15 min periods counter: 52)
[2025-11-24 16:07:23] 2025-11-24 15:07:13,068 | INFO     | PID=2612538 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 16:07:23] 2025-11-24 15:07:13,068 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 16:07:23] 2025-11-24 15:07:13,068 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 16:07:23] 2025-11-24 15:07:13,068 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 16:07:23] 2025-11-24 15:07:18,396 | INFO     | [monitor] cgroup control has ended
[2025-11-24 16:07:23] 2025-11-24 15:07:18,460 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139747786807104)>', '<ExcThread(monitor, started 139747129276160)>']
[2025-11-24 16:07:23] 2025-11-24 15:07:19,097 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 16:07:23] 2025-11-24 15:07:19,097 | INFO     | [monitor] control thread has ended
[2025-11-24 16:07:23] 2025-11-24 15:07:23,484 | INFO     | all workflow threads have been joined
[2025-11-24 16:07:23] 2025-11-24 15:07:23,486 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 16:07:23] 2025-11-24 15:07:23,487 | INFO     | traces error code: 0
[2025-11-24 16:07:23] 2025-11-24 15:07:23,487 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 16:07:23] 2025-11-24 15:07:23,530 [wrapper] ==== pilot stdout END ====
[2025-11-24 16:07:23] 2025-11-24 15:07:23,532 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 16:07:23] 2025-11-24 15:07:23,535 [wrapper] pilotpid: 2612538
[2025-11-24 16:07:23] 2025-11-24 15:07:23,536 [wrapper] Pilot exit status: 0
[2025-11-24 16:07:23] 2025-11-24 15:07:23,542 [wrapper] pandaids: 6893857049
[2025-11-24 16:07:23] 2025-11-24 15:07:23,554 [wrapper] cleanup supervisor_pilot 2710021 2612539
[2025-11-24 16:07:23] 2025-11-24 15:07:23,556 [wrapper] Test setup, not cleaning
[2025-11-24 16:07:23] 2025-11-24 15:07:23,558 [wrapper] apfmon messages muted
[2025-11-24 16:07:23] 2025-11-24 15:07:23,560 [wrapper] ==== wrapper stdout END ====
[2025-11-24 16:07:23] 2025-11-24 15:07:23,562 [wrapper] ==== wrapper stderr END ====
[2025-11-24 16:07:23]  *** Error codes and diagnostics ***
[2025-11-24 16:07:23]     "exeErrorCode": 0,
[2025-11-24 16:07:23]     "exeErrorDiag": "",
[2025-11-24 16:07:23]     "pilotErrorCode": 0,
[2025-11-24 16:07:23]     "pilotErrorDiag": "",
[2025-11-24 16:07:23]  *** Listing of results directory ***
[2025-11-24 16:07:23] total 1323268
[2025-11-24 16:07:23] -rw-r--r-- 1 boinc boinc      5112 Nov 20 13:55 queuedata.json
[2025-11-24 16:07:23] -rwx------ 1 boinc boinc     36292 Nov 20 13:56 runpilot2-wrapper.sh
[2025-11-24 16:07:23] -rw-r--r-- 1 boinc boinc    576529 Nov 20 13:56 pilot3.tar.gz
[2025-11-24 16:07:23] -rw-r--r-- 1 boinc boinc       100 Nov 24 03:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 16:07:23] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 03:21 run_atlas
[2025-11-24 16:07:23] -rw-r--r-- 1 boinc boinc       105 Nov 24 03:21 job.xml
[2025-11-24 16:07:23] -rw-r--r-- 2 boinc boinc 411064020 Nov 24 03:21 EVNT.47493127._000475.pool.root.1
[2025-11-24 16:07:23] -rw-r--r-- 2 boinc boinc    590096 Nov 24 03:21 input.tar.gz
[2025-11-24 16:07:23] -rw-r--r-- 2 boinc boinc     15847 Nov 24 03:21 start_atlas.sh
[2025-11-24 16:07:23] drwxrwx--x 2 boinc boinc      4096 Nov 24 03:21 shared
[2025-11-24 16:07:23] -rw-r--r-- 1 boinc boinc         0 Nov 24 03:21 boinc_setup_complete
[2025-11-24 16:07:23] -rw-r--r-- 1 boinc boinc      6206 Nov 24 03:21 init_data.xml
[2025-11-24 16:07:23] -rw-r--r-- 1 boinc boinc         0 Nov 24 03:21 boinc_lockfile
[2025-11-24 16:07:23] -rw-r--r-- 1 boinc boinc      2786 Nov 24 03:21 pandaJob.out
[2025-11-24 16:07:23] -rw------- 1 boinc boinc    989786 Nov 24 03:22 agis_schedconf.cvmfs.json
[2025-11-24 16:07:23] drwx------ 5 boinc boinc      4096 Nov 24 03:22 pilot3
[2025-11-24 16:07:23] -rw-r--r-- 1 boinc boinc       532 Nov 24 16:03 boinc_task_state.xml
[2025-11-24 16:07:23] -rw------- 1 boinc boinc 924712744 Nov 24 16:06 HITS.47523449._004746.pool.root.1
[2025-11-24 16:07:23] -rw------- 1 boinc boinc      1033 Nov 24 16:06 memory_monitor_summary.json
[2025-11-24 16:07:23] -rw------- 1 boinc boinc   1516227 Nov 24 16:06 agis_ddmendpoints.agis.ALL.json
[2025-11-24 16:07:23] -rw------- 1 boinc boinc   1243027 Nov 24 16:06 log.47523449._004746.job.log.tgz.1
[2025-11-24 16:07:23] -rw------- 1 boinc boinc      8561 Nov 24 16:06 heartbeat.json
[2025-11-24 16:07:23] -rw------- 1 boinc boinc        95 Nov 24 16:07 pilot_heartbeat.json
[2025-11-24 16:07:23] -rw-r--r-- 1 boinc boinc        28 Nov 24 16:07 wrapper_checkpoint.txt
[2025-11-24 16:07:23] -rw------- 1 boinc boinc      4752 Nov 24 16:07 pilotlog.txt
[2025-11-24 16:07:23] -rw------- 1 boinc boinc   6431273 Nov 24 16:07 log.47523449._004746.job.log.1
[2025-11-24 16:07:23] -rw------- 1 boinc boinc       353 Nov 24 16:07 output.list
[2025-11-24 16:07:23] -rw-r--r-- 1 boinc boinc       620 Nov 24 16:07 runtime_log
[2025-11-24 16:07:23] -rw------- 1 boinc boinc   7690240 Nov 24 16:07 result.tar.gz
[2025-11-24 16:07:23] -rw-r--r-- 1 boinc boinc      8898 Nov 24 16:07 runtime_log.err
[2025-11-24 16:07:23] -rw------- 1 boinc boinc       665 Nov 24 16:07 Au4LDmNOJg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmVrHKDmrgaXTm.diag
[2025-11-24 16:07:23] -rw-r--r-- 1 boinc boinc      8192 Nov 24 16:07 boinc_mmap_file
[2025-11-24 16:07:23] -rw-r--r-- 1 boinc boinc     10186 Nov 24 16:07 stderr.txt
[2025-11-24 16:07:23] HITS file was successfully produced:
[2025-11-24 16:07:23] -rw------- 1 boinc boinc 924712744 Nov 24 16:06 shared/HITS.pool.root.1
[2025-11-24 16:07:23]  *** Contents of shared directory: ***
[2025-11-24 16:07:23] total 1312588
[2025-11-24 16:07:23] -rw-r--r-- 2 boinc boinc 411064020 Nov 24 03:21 ATLAS.root_0
[2025-11-24 16:07:23] -rw-r--r-- 2 boinc boinc    590096 Nov 24 03:21 input.tar.gz
[2025-11-24 16:07:23] -rw-r--r-- 2 boinc boinc     15847 Nov 24 03:21 start_atlas.sh
[2025-11-24 16:07:23] -rw------- 1 boinc boinc 924712744 Nov 24 16:06 HITS.pool.root.1
[2025-11-24 16:07:23] -rw------- 1 boinc boinc   7690240 Nov 24 16:07 result.tar.gz
16:07:45 (2608824): run_atlas exited; CPU time 91065.130913
16:07:45 (2608824): called boinc_finish(0)

</stderr_txt>
]]>

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