Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:32:39 (1878136): wrapper (7.7.26015): starting
22:32:39 (1878136): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 22:32:39] Arguments: --nthreads 8
[2025-11-20 22:32:39] Threads: 8
[2025-11-20 22:32:39] Checking for CVMFS
[2025-11-20 22:32:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 22:32:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 22:32:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 22:32:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 22:32:42] 2.13.3.0 16090 22266 383664 153106 1 976 30972789 32935937 35114 16776704 0 314603538 99.624 282449097 54416 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-20 22:32:42] CVMFS is ok
[2025-11-20 22:32:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 22:32:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 22:32:42] Further information can be found at the LHC@home message board.
[2025-11-20 22:32:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 22:32:42] Checking for apptainer binary...
[2025-11-20 22:32:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 22:32:42] Running /usr/bin/apptainer --version
[2025-11-20 22:32:42] apptainer version 1.4.4-1.el9
[2025-11-20 22:32:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 22:33:05] c7-9-15.aglt2.org
[2025-11-20 22:33:05] apptainer works
[2025-11-20 22:33:05] Set ATHENA_PROC_NUMBER=8
[2025-11-20 22:33:05] Set ATHENA_CORE_NUMBER=8
[2025-11-20 22:33:05] Starting ATLAS job with PandaID=6893857446
[2025-11-20 22:33:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
02:40:07 (1878136): BOINC client no longer exists - exiting
02:40:07 (1878136): timer handler: client dead, exiting
02:41:25 (101159): wrapper (7.7.26015): starting
02:41:25 (101159): wrapper: running run_atlas (--nthreads 9)
[2025-11-21 02:41:25] Arguments: --nthreads 9
[2025-11-21 02:41:25] Threads: 9
[2025-11-21 02:41:25] This job has been restarted, cleaning up previous attempt
[2025-11-21 02:41:26] Checking for CVMFS
[2025-11-21 02:41:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 02:41:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 02:41:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 02:41:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 02:41:26] 2.13.3.0 16090 22515 373752 153113 1 372 16549333 32935937 24041 16776704 0 317991728 99.628 282666095 54392 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-21 02:41:26] CVMFS is ok
[2025-11-21 02:41:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 02:41:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 02:41:26] Further information can be found at the LHC@home message board.
[2025-11-21 02:41:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 02:41:26] Checking for apptainer binary...
[2025-11-21 02:41:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 02:41:26] Running /usr/bin/apptainer --version
[2025-11-21 02:41:26] apptainer version 1.4.4-1.el9
[2025-11-21 02:41:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 02:41:26] c7-9-15.aglt2.org
[2025-11-21 02:41:26] apptainer works
[2025-11-21 02:41:26] Set ATHENA_PROC_NUMBER=9
[2025-11-21 02:41:26] Set ATHENA_CORE_NUMBER=9
[2025-11-21 02:41:26] Starting ATLAS job with PandaID=6893857446
[2025-11-21 02:41:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 08:42:52]  *** The last 200 lines of the pilot log: ***
[2025-11-21 08:42:52] 2025-11-21 13:42:01,001 | INFO     | monitor loop #1319: job 0:6893857446 is in state 'finished'
[2025-11-21 08:42:52] 2025-11-21 13:42:01,001 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 08:42:52] 2025-11-21 13:42:02,354 | INFO     | time since job start (21625s) is within the limit (172800.0s)
[2025-11-21 08:42:52] 2025-11-21 13:42:02,544 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-21 08:42:52] 2025-11-21 13:42:02,549 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.2394375000013
[2025-11-21 08:42:52] 2025-11-21 13:42:02,563 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6893857446/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 08:42:52] 2025-11-21 13:42:02,563 | INFO     | extracted standard info from prmon json
[2025-11-21 08:42:52] 2025-11-21 13:42:02,563 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 08:42:52] 2025-11-21 13:42:02,563 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 08:42:52] 2025-11-21 13:42:02,569 | INFO     | fitting pss+swap vs Time
[2025-11-21 08:42:52] 2025-11-21 13:42:02,574 | INFO     | sum of square deviations: 13755736179.641254
[2025-11-21 08:42:52] 2025-11-21 13:42:02,576 | INFO     | sum of deviations: 215248550932.01407
[2025-11-21 08:42:52] 2025-11-21 13:42:02,577 | INFO     | mean x: 1763721690.6581922
[2025-11-21 08:42:52] 2025-11-21 13:42:02,577 | INFO     | mean y: 3025983.1158192093
[2025-11-21 08:42:52] 2025-11-21 13:42:02,577 | INFO     | intersect: -27595536042.47827
[2025-11-21 08:42:52] 2025-11-21 13:42:02,577 | INFO     | chi2: 3.7236009888252433
[2025-11-21 08:42:52] 2025-11-21 13:42:02,577 | INFO     | sum of square deviations: 13181180680.338133
[2025-11-21 08:42:52] 2025-11-21 13:42:02,590 | INFO     | sum of deviations: 313664980969.61053
[2025-11-21 08:42:52] 2025-11-21 13:42:02,590 | INFO     | mean x: 1763721538.1747851
[2025-11-21 08:42:52] 2025-11-21 13:42:02,590 | INFO     | mean y: 3052043.1375358165
[2025-11-21 08:42:52] 2025-11-21 13:42:02,590 | INFO     | intersect: -41967215729.04315
[2025-11-21 08:42:52] 2025-11-21 13:42:02,591 | INFO     | chi2: 1.5273009515223948
[2025-11-21 08:42:52] 2025-11-21 13:42:02,591 | INFO     | current chi2=1.5273009515223948 (change=58.98322736227863 %)
[2025-11-21 08:42:52] 2025-11-21 13:42:02,591 | INFO     | sum of square deviations: 12622773136.825546
[2025-11-21 08:42:52] 2025-11-21 13:42:02,593 | INFO     | sum of deviations: 306973696951.51746
[2025-11-21 08:42:52] 2025-11-21 13:42:02,593 | INFO     | mean x: 1763721385.6802325
[2025-11-21 08:42:52] 2025-11-21 13:42:02,593 | INFO     | mean y: 3050210.031976744
[2025-11-21 08:42:52] 2025-11-21 13:42:02,593 | INFO     | intersect: -42888956822.49502
[2025-11-21 08:42:52] 2025-11-21 13:42:02,593 | INFO     | chi2: 1.5195833728857078
[2025-11-21 08:42:52] 2025-11-21 13:42:02,593 | INFO     | current chi2=1.5195833728857078 (change=0.5053083106505104 %)
[2025-11-21 08:42:52] 2025-11-21 13:42:02,593 | INFO     | right removable region: 343
[2025-11-21 08:42:52] 2025-11-21 13:42:02,593 | INFO     | sum of square deviations: 13181016349.69045
[2025-11-21 08:42:52] 2025-11-21 13:42:02,595 | INFO     | sum of deviations: 142356655243.80807
[2025-11-21 08:42:52] 2025-11-21 13:42:02,595 | INFO     | mean x: 1763721843.1633239
[2025-11-21 08:42:52] 2025-11-21 13:42:02,595 | INFO     | mean y: 3045224.406876791
[2025-11-21 08:42:52] 2025-11-21 13:42:02,595 | INFO     | intersect: -19045375300.39366
[2025-11-21 08:42:52] 2025-11-21 13:42:02,595 | INFO     | chi2: 2.300743616798715
[2025-11-21 08:42:52] 2025-11-21 13:42:02,595 | INFO     | current chi2=2.300743616798715 (change=38.211864705606516 %)
[2025-11-21 08:42:52] 2025-11-21 13:42:02,596 | INFO     | sum of square deviations: 12622593739.206385
[2025-11-21 08:42:52] 2025-11-21 13:42:02,601 | INFO     | sum of deviations: 122472052638.17734
[2025-11-21 08:42:52] 2025-11-21 13:42:02,601 | INFO     | mean x: 1763721995.6598837
[2025-11-21 08:42:52] 2025-11-21 13:42:02,601 | INFO     | mean y: 3050650.9331395347
[2025-11-21 08:42:52] 2025-11-21 13:42:02,602 | INFO     | intersect: -17109648811.194155
[2025-11-21 08:42:52] 2025-11-21 13:42:02,602 | INFO     | chi2: 2.2696157780230592
[2025-11-21 08:42:52] 2025-11-21 13:42:02,602 | INFO     | current chi2=2.2696157780230592 (change=1.3529468711062822 %)
[2025-11-21 08:42:52] 2025-11-21 13:42:02,602 | INFO     | left removable region: 20
[2025-11-21 08:42:52] 2025-11-21 13:42:02,602 | INFO     | sum of square deviations: 10449316533.585089
[2025-11-21 08:42:52] 2025-11-21 13:42:02,608 | INFO     | sum of deviations: 182239209879.40866
[2025-11-21 08:42:52] 2025-11-21 13:42:02,608 | INFO     | mean x: 1763721965.1795666
[2025-11-21 08:42:52] 2025-11-21 13:42:02,608 | INFO     | mean y: 3085227.061919505
[2025-11-21 08:42:52] 2025-11-21 13:42:02,608 | INFO     | intersect: -30756754074.21776
[2025-11-21 08:42:52] 2025-11-21 13:42:02,608 | INFO     | chi2: 0.03324779587963334
[2025-11-21 08:42:52] 2025-11-21 13:42:02,608 | INFO     | current memory leak: 17.44 B/s (using 323 data points, chi2=0.03)
[2025-11-21 08:42:52] 2025-11-21 13:42:02,609 | INFO     | could have reported an average CPU frequency of 3796 MHz (15 samples)
[2025-11-21 08:42:52] 2025-11-21 13:42:02,609 | INFO     | ..............................
[2025-11-21 08:42:52] 2025-11-21 13:42:02,609 | INFO     | . Timing measurements:
[2025-11-21 08:42:52] 2025-11-21 13:42:02,609 | INFO     | . get job = 0 s
[2025-11-21 08:42:52] 2025-11-21 13:42:02,609 | INFO     | . initial setup = 2 s
[2025-11-21 08:42:52] 2025-11-21 13:42:02,609 | INFO     | . payload setup = 5 s
[2025-11-21 08:42:52] 2025-11-21 13:42:02,609 | INFO     | . stage-in = 0 s
[2025-11-21 08:42:52] 2025-11-21 13:42:02,609 | INFO     | . payload execution = 21579 s
[2025-11-21 08:42:52] 2025-11-21 13:42:02,609 | INFO     | . stage-out = 4 s
[2025-11-21 08:42:52] 2025-11-21 13:42:02,609 | INFO     | . log creation = 0 s
[2025-11-21 08:42:52] 2025-11-21 13:42:02,609 | INFO     | ..............................
[2025-11-21 08:42:52] 2025-11-21 13:42:02,723 | INFO     | 
[2025-11-21 08:42:52] 2025-11-21 13:42:02,723 | INFO     | job summary report
[2025-11-21 08:42:52] 2025-11-21 13:42:02,723 | INFO     | --------------------------------------------------
[2025-11-21 08:42:52] 2025-11-21 13:42:02,723 | INFO     | PanDA job id: 6893857446
[2025-11-21 08:42:52] 2025-11-21 13:42:02,723 | INFO     | task id: 47523449
[2025-11-21 08:42:52] 2025-11-21 13:42:02,723 | INFO     | errors: (none)
[2025-11-21 08:42:52] 2025-11-21 13:42:02,723 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 08:42:52] 2025-11-21 13:42:02,723 | INFO     | pilot state: finished 
[2025-11-21 08:42:52] 2025-11-21 13:42:02,723 | INFO     | transexitcode: 0
[2025-11-21 08:42:52] 2025-11-21 13:42:02,723 | INFO     | exeerrorcode: 0
[2025-11-21 08:42:52] 2025-11-21 13:42:02,723 | INFO     | exeerrordiag: 
[2025-11-21 08:42:52] 2025-11-21 13:42:02,723 | INFO     | exitcode: 0
[2025-11-21 08:42:52] 2025-11-21 13:42:02,723 | INFO     | exitmsg: OK
[2025-11-21 08:42:52] 2025-11-21 13:42:02,723 | INFO     | cpuconsumptiontime: 136084 s
[2025-11-21 08:42:52] 2025-11-21 13:42:02,723 | INFO     | nevents: 1000
[2025-11-21 08:42:52] 2025-11-21 13:42:02,724 | INFO     | neventsw: 0
[2025-11-21 08:42:52] 2025-11-21 13:42:02,724 | INFO     | pid: 207519
[2025-11-21 08:42:52] 2025-11-21 13:42:02,724 | INFO     | pgrp: 207519
[2025-11-21 08:42:52] 2025-11-21 13:42:02,724 | INFO     | corecount: 9
[2025-11-21 08:42:52] 2025-11-21 13:42:02,724 | INFO     | event service: False
[2025-11-21 08:42:52] 2025-11-21 13:42:02,724 | INFO     | sizes: {0: 2298807, 4: 2299069, 10: 2299097, 21588: 2333846, 21593: 2342840, 21594: 2342896, 21610: 2343270}
[2025-11-21 08:42:52] 2025-11-21 13:42:02,724 | INFO     | --------------------------------------------------
[2025-11-21 08:42:52] 2025-11-21 13:42:02,724 | INFO     | 
[2025-11-21 08:42:52] 2025-11-21 13:42:02,724 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-21 08:42:52] 2025-11-21 13:42:02,761 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 08:42:52] 2025-11-21 13:42:02,762 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 08:42:52] 2025-11-21 13:42:02,762 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 08:42:52] 2025-11-21 13:42:02,762 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 08:42:52] 2025-11-21 13:42:02,762 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 08:42:52] 2025-11-21 13:42:02,762 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 08:42:52] 2025-11-21 13:42:02,762 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 08:42:52] 2025-11-21 13:42:02,763 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 08:42:52] 2025-11-21 13:42:02,763 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 08:42:52] 2025-11-21 13:42:02,763 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 08:42:52] 2025-11-21 13:42:02,763 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 08:42:52] 2025-11-21 13:42:02,763 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 08:42:52] 2025-11-21 13:42:02,763 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 08:42:52] 2025-11-21 13:42:02,763 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 08:42:52] 2025-11-21 13:42:02,763 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 08:42:52] 2025-11-21 13:42:02,764 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 08:42:52] 2025-11-21 13:42:02,764 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 08:42:52] 2025-11-21 13:42:02,764 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 08:42:52] 2025-11-21 13:42:02,764 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 08:42:52] 2025-11-21 13:42:02,764 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 08:42:52] 2025-11-21 13:42:02,764 | INFO     | job 6893857446 has completed (purged errors)
[2025-11-21 08:42:52] 2025-11-21 13:42:02,764 | INFO     | overall cleanup function is called
[2025-11-21 08:42:52] 2025-11-21 13:42:03,782 | INFO     | --- collectZombieJob: --- 10, [207519]
[2025-11-21 08:42:52] 2025-11-21 13:42:03,783 | INFO     | zombie collector waiting for pid 207519
[2025-11-21 08:42:52] 2025-11-21 13:42:03,783 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 08:42:52] 2025-11-21 13:42:03,783 | INFO     | collected zombie processes
[2025-11-21 08:42:52] 2025-11-21 13:42:03,783 | INFO     | will attempt to kill all subprocesses of pid=207519
[2025-11-21 08:42:52] 2025-11-21 13:42:04,612 | INFO     | process IDs to be killed: [207519] (in reverse order)
[2025-11-21 08:42:52] 2025-11-21 13:42:04,837 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 08:42:52] 2025-11-21 13:42:04,837 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 08:42:52] 2025-11-21 13:42:04,863 | INFO     | did not find any defunct processes belonging to 207519
[2025-11-21 08:42:52] 2025-11-21 13:42:04,897 | INFO     | did not find any defunct processes belonging to 207519
[2025-11-21 08:42:52] 2025-11-21 13:42:04,913 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 08:42:52] 2025-11-21 13:42:04,914 | INFO     | ready for new job
[2025-11-21 08:42:52] 2025-11-21 13:42:04,914 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 08:42:52] 2025-11-21 13:42:04,916 | INFO     | ***************************************
[2025-11-21 08:42:52] 2025-11-21 13:42:04,916 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 08:42:52] 2025-11-21 13:42:04,916 | INFO     | ***************************************
[2025-11-21 08:42:52] 2025-11-21 13:42:04,916 | INFO     | 
[2025-11-21 08:42:52] 2025-11-21 13:42:04,924 | INFO     | architecture information:
[2025-11-21 08:42:52] 2025-11-21 13:42:04,925 | INFO     | executing command: cat /etc/os-release
[2025-11-21 08:42:52] 2025-11-21 13:42:04,966 | INFO     | cat /etc/os-release:
[2025-11-21 08:42:52] NAME="CentOS Linux"
[2025-11-21 08:42:52] VERSION="7 (Core)"
[2025-11-21 08:42:52] ID="centos"
[2025-11-21 08:42:52] ID_LIKE="rhel fedora"
[2025-11-21 08:42:52] VERSION_ID="7"
[2025-11-21 08:42:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 08:42:52] ANSI_COLOR="0;31"
[2025-11-21 08:42:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 08:42:52] HOME_URL="https://www.centos.org/"
[2025-11-21 08:42:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 08:42:52] 
[2025-11-21 08:42:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 08:42:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 08:42:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 08:42:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 08:42:52] 
[2025-11-21 08:42:52] 2025-11-21 13:42:04,966 | INFO     | ***************************************
[2025-11-21 08:42:52] 2025-11-21 13:42:05,468 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-21 08:42:52] 2025-11-21 13:42:05,485 | INFO     | sufficient remaining disk space (51955892224 B)
[2025-11-21 08:42:52] 2025-11-21 13:42:05,486 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 08:42:52] 2025-11-21 13:42:05,486 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 08:42:52] 2025-11-21 13:42:05,486 | INFO     | update_server=False
[2025-11-21 08:42:52] 2025-11-21 13:42:05,486 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 08:42:52] 2025-11-21 13:42:05,486 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 08:42:52] 2025-11-21 13:42:05,487 | INFO     | aborting loop
[2025-11-21 08:42:52] 2025-11-21 13:42:06,094 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 08:42:52] 2025-11-21 13:42:06,491 | INFO     | [job] retrieve thread has finished
[2025-11-21 08:42:52] 2025-11-21 13:42:06,494 | INFO     | [job] job monitor thread has finished
[2025-11-21 08:42:52] 2025-11-21 13:42:06,494 | INFO     | all data control threads have been joined
[2025-11-21 08:42:52] 2025-11-21 13:42:06,618 | INFO     | all job control threads have been joined
[2025-11-21 08:42:52] 2025-11-21 13:42:06,723 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 08:42:52] 2025-11-21 13:42:06,856 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 08:42:52] 2025-11-21 13:42:06,898 | INFO     | all payload control threads have been joined
[2025-11-21 08:42:52] 2025-11-21 13:42:07,004 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 08:42:52] 2025-11-21 13:42:07,013 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 08:42:52] 2025-11-21 13:42:07,259 | INFO     | [job] validate thread has finished
[2025-11-21 08:42:52] 2025-11-21 13:42:07,396 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 08:42:52] 2025-11-21 13:42:07,447 | INFO     | [data] copytool_in thread has finished
[2025-11-21 08:42:52] 2025-11-21 13:42:07,500 | INFO     | [data] control thread has finished
[2025-11-21 08:42:52] 2025-11-21 13:42:07,558 | INFO     | [payload] failed_post thread has finished
[2025-11-21 08:42:52] 2025-11-21 13:42:07,586 | INFO     | [payload] validate_post thread has finished
[2025-11-21 08:42:52] 2025-11-21 13:42:07,625 | INFO     | [job] control thread has finished
[2025-11-21 08:42:52] 2025-11-21 13:42:07,737 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 08:42:52] 2025-11-21 13:42:07,904 | INFO     | [payload] control thread has finished
[2025-11-21 08:42:52] 2025-11-21 13:42:08,102 | INFO     | [data] copytool_out thread has finished
[2025-11-21 08:42:52] 2025-11-21 13:42:08,743 | INFO     | [job] queue monitor thread has finished
[2025-11-21 08:42:52] 2025-11-21 13:42:10,866 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 08:42:52] 2025-11-21 13:42:14,196 | INFO     | [monitor] cgroup control has ended
[2025-11-21 08:42:52] 2025-11-21 13:42:14,356 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140081116559168)>', '<ExcThread(monitor, started 140080341571328)>']
[2025-11-21 08:42:52] 2025-11-21 13:42:19,394 | INFO     | all workflow threads have been joined
[2025-11-21 08:42:52] 2025-11-21 13:42:19,395 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 08:42:52] 2025-11-21 13:42:19,395 | INFO     | traces error code: 0
[2025-11-21 08:42:52] 2025-11-21 13:42:19,395 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 08:42:52] 2025-11-21 13:42:36,647 | INFO     | PID=138805 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-21 08:42:52] 2025-11-21 13:42:36,648 | INFO     | .. there are 64 such processes running
[2025-11-21 08:42:52] 2025-11-21 13:42:36,648 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 08:42:52] 2025-11-21 13:42:36,648 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 08:42:52] 2025-11-21 13:42:36,648 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 08:42:52] 2025-11-21 13:42:36,648 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 08:42:52] 2025-11-21 13:42:36,648 | INFO     | [monitor] control thread has ended
[2025-11-21 08:42:52] 2025-11-21 13:42:36,804 [wrapper] ==== pilot stdout END ====
[2025-11-21 08:42:52] 2025-11-21 13:42:36,810 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 08:42:52] 2025-11-21 13:42:36,816 [wrapper] pilotpid: 138805
[2025-11-21 08:42:52] 2025-11-21 13:42:36,820 [wrapper] Pilot exit status: 0
[2025-11-21 08:42:52] 2025-11-21 13:42:36,843 [wrapper] pandaids: 6893857446 6893857446
[2025-11-21 08:42:52] 2025-11-21 13:42:37,016 [wrapper] cleanup supervisor_pilot 2767973 138807
[2025-11-21 08:42:52] 2025-11-21 13:42:37,023 [wrapper] Test setup, not cleaning
[2025-11-21 08:42:52] 2025-11-21 13:42:37,027 [wrapper] apfmon messages muted
[2025-11-21 08:42:52] 2025-11-21 13:42:37,033 [wrapper] ==== wrapper stdout END ====
[2025-11-21 08:42:52] 2025-11-21 13:42:37,039 [wrapper] ==== wrapper stderr END ====
[2025-11-21 08:42:52]  *** Error codes and diagnostics ***
[2025-11-21 08:42:52]     "exeErrorCode": 0,
[2025-11-21 08:42:52]     "exeErrorDiag": "",
[2025-11-21 08:42:52]     "pilotErrorCode": 0,
[2025-11-21 08:42:52]     "pilotErrorDiag": "",
[2025-11-21 08:42:52]  *** Listing of results directory ***
[2025-11-21 08:42:52] total 1719072
[2025-11-21 08:42:52] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-21 08:42:52] -rwx------. 1 boincer umatlas     36292 Nov 20 08:01 runpilot2-wrapper.sh
[2025-11-21 08:42:52] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 08:01 queuedata.json
[2025-11-21 08:42:52] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 08:01 pilot3.tar.gz
[2025-11-21 08:42:52] -rw-r--r--. 1 boincer umatlas       100 Nov 20 22:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 08:42:52] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 20 22:32 run_atlas
[2025-11-21 08:42:52] -rw-r--r--. 1 boincer umatlas       105 Nov 20 22:32 job.xml
[2025-11-21 08:42:52] -rw-r--r--. 3 boincer umatlas 411036958 Nov 20 22:32 EVNT.47493127._000485.pool.root.1
[2025-11-21 08:42:52] -rw-r--r--. 3 boincer umatlas 411036958 Nov 20 22:32 ATLAS.root_0
[2025-11-21 08:42:52] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 22:32 start_atlas.sh
[2025-11-21 08:42:52] drwxrwx--x. 2 boincer umatlas      4096 Nov 20 22:32 shared
[2025-11-21 08:42:52] -rw-r--r--. 2 boincer umatlas    590099 Nov 20 22:32 input.tar.gz
[2025-11-21 08:42:52] -rw-r--r--. 1 boincer umatlas         0 Nov 20 22:32 boinc_lockfile
[2025-11-21 08:42:52] -rw-r--r--. 1 boincer umatlas      2786 Nov 21 02:41 pandaJob.out
[2025-11-21 08:42:52] -rw-------. 1 boincer umatlas        57 Nov 21 02:41 setup.sh.local
[2025-11-21 08:42:52] -rw-------. 1 boincer umatlas    989817 Nov 21 02:41 agis_schedconf.cvmfs.json
[2025-11-21 08:42:52] -rw-r--r--. 1 boincer umatlas       533 Nov 21 08:35 boinc_task_state.xml
[2025-11-21 08:42:52] -rw-r--r--. 1 boincer umatlas      7172 Nov 21 08:40 init_data.xml
[2025-11-21 08:42:52] -rw-------. 1 boincer umatlas 925268880 Nov 21 08:41 HITS.47523449._004843.pool.root.1
[2025-11-21 08:42:52] -rw-------. 1 boincer umatlas      1039 Nov 21 08:41 memory_monitor_summary.json
[2025-11-21 08:42:52] -rw-------. 1 boincer umatlas   1526164 Nov 21 08:41 agis_ddmendpoints.agis.ALL.json
[2025-11-21 08:42:52] -rw-------. 1 boincer umatlas   1737004 Nov 21 08:41 log.47523449._004843.job.log.tgz.1
[2025-11-21 08:42:52] -rw-------. 1 boincer umatlas      8575 Nov 21 08:42 heartbeat.json
[2025-11-21 08:42:52] -rw-r--r--. 1 boincer umatlas        29 Nov 21 08:42 wrapper_checkpoint.txt
[2025-11-21 08:42:52] -rw-------. 1 boincer umatlas        96 Nov 21 08:42 pilot_heartbeat.json
[2025-11-21 08:42:52] -rw-------. 1 boincer umatlas       822 Nov 21 08:42 pilotlog.txt
[2025-11-21 08:42:52] -rw-------. 1 boincer umatlas   2794126 Nov 21 08:42 log.47523449._004843.job.log.1
[2025-11-21 08:42:52] -rw-------. 1 boincer umatlas       353 Nov 21 08:42 output.list
[2025-11-21 08:42:52] -rw-r--r--. 1 boincer umatlas       620 Nov 21 08:42 runtime_log
[2025-11-21 08:42:52] -rw-------. 1 boincer umatlas   4546560 Nov 21 08:42 result.tar.gz
[2025-11-21 08:42:52] -rw-------. 1 boincer umatlas       784 Nov 21 08:42 WaHLDmKTJg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmkfGKDma0Mikn.diag
[2025-11-21 08:42:52] -rw-r--r--. 1 boincer umatlas      9423 Nov 21 08:42 runtime_log.err
[2025-11-21 08:42:52] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 08:42 boinc_mmap_file
[2025-11-21 08:42:52] -rw-r--r--. 1 boincer umatlas     23612 Nov 21 08:42 stderr.txt
[2025-11-21 08:42:52] HITS file was successfully produced:
[2025-11-21 08:42:52] -rw-------. 1 boincer umatlas 925268880 Nov 21 08:41 shared/HITS.pool.root.1
[2025-11-21 08:42:52]  *** Contents of shared directory: ***
[2025-11-21 08:42:52] total 1310032
[2025-11-21 08:42:52] -rw-r--r--. 3 boincer umatlas 411036958 Nov 20 22:32 ATLAS.root_0
[2025-11-21 08:42:52] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 22:32 start_atlas.sh
[2025-11-21 08:42:52] -rw-r--r--. 2 boincer umatlas    590099 Nov 20 22:32 input.tar.gz
[2025-11-21 08:42:52] -rw-------. 1 boincer umatlas 925268880 Nov 21 08:41 HITS.pool.root.1
[2025-11-21 08:42:52] -rw-------. 1 boincer umatlas   4546560 Nov 21 08:42 result.tar.gz
08:42:54 (101159): run_atlas exited; CPU time 136354.352074
08:42:54 (101159): called boinc_finish(0)

</stderr_txt>
]]>

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