Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:37:37 (1873220): wrapper (7.7.26015): starting
22:37:37 (1873220): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 22:37:37] Arguments: --nthreads 8
[2025-11-20 22:37:37] Threads: 8
[2025-11-20 22:37:37] Checking for CVMFS
[2025-11-20 22:37:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 22:37:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 22:37:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 22:37:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 22:37:40] 2.13.2.0 5795 25179 193260 153106 1 75 29724804 39288832 5179 16776704 0 13838912 99.463 14501938 33746 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 22:37:40] CVMFS is ok
[2025-11-20 22:37:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 22:37:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 22:37:40] Further information can be found at the LHC@home message board.
[2025-11-20 22:37:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 22:37:40] Checking for apptainer binary...
[2025-11-20 22:37:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 22:37:40] Running /usr/bin/apptainer --version
[2025-11-20 22:37:40] apptainer version 1.4.4-1.el9
[2025-11-20 22:37:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 22:37:40] c-210-14.aglt2.org
[2025-11-20 22:37:40] apptainer works
[2025-11-20 22:37:40] Set ATHENA_PROC_NUMBER=8
[2025-11-20 22:37:40] Set ATHENA_CORE_NUMBER=8
[2025-11-20 22:37:41] Starting ATLAS job with PandaID=6893874384
[2025-11-20 22:37:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 10:46:51]  *** The last 200 lines of the pilot log: ***
[2025-11-21 10:46:51] 2025-11-21 15:46:15,573 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 10:46:51] 2025-11-21 15:46:17,111 | INFO     | time since job start (43666s) is within the limit (172800.0s)
[2025-11-21 10:46:51] 2025-11-21 15:46:17,418 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 10:46:51] 2025-11-21 15:46:17,425 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2620.185725
[2025-11-21 10:46:51] 2025-11-21 15:46:17,432 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6893874384/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 10:46:51] 2025-11-21 15:46:17,432 | INFO     | extracted standard info from prmon json
[2025-11-21 10:46:51] 2025-11-21 15:46:17,433 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 10:46:51] 2025-11-21 15:46:17,433 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 10:46:51] 2025-11-21 15:46:17,446 | INFO     | fitting pss+swap vs Time
[2025-11-21 10:46:51] 2025-11-21 15:46:17,447 | INFO     | sum of square deviations: 112866053822.44966
[2025-11-21 10:46:51] 2025-11-21 15:46:17,460 | INFO     | sum of deviations: 1376129373868.736
[2025-11-21 10:46:51] 2025-11-21 15:46:17,460 | INFO     | mean x: 1763718172.9201682
[2025-11-21 10:46:51] 2025-11-21 15:46:17,460 | INFO     | mean y: 2854187.8725490198
[2025-11-21 10:46:51] 2025-11-21 15:46:17,461 | INFO     | intersect: -21501436099.441265
[2025-11-21 10:46:51] 2025-11-21 15:46:17,462 | INFO     | chi2: 8.91296636562998
[2025-11-21 10:46:51] 2025-11-21 15:46:17,463 | INFO     | sum of square deviations: 110511524429.06085
[2025-11-21 10:46:51] 2025-11-21 15:46:17,476 | INFO     | sum of deviations: 1556873289502.3608
[2025-11-21 10:46:51] 2025-11-21 15:46:17,476 | INFO     | mean x: 1763718020.4231312
[2025-11-21 10:46:51] 2025-11-21 15:46:17,476 | INFO     | mean y: 2865882.6121297604
[2025-11-21 10:46:51] 2025-11-21 15:46:17,476 | INFO     | intersect: -24844185050.73538
[2025-11-21 10:46:51] 2025-11-21 15:46:17,477 | INFO     | chi2: 6.87941574082429
[2025-11-21 10:46:51] 2025-11-21 15:46:17,478 | INFO     | current chi2=6.87941574082429 (change=22.815643427618348 %)
[2025-11-21 10:46:51] 2025-11-21 15:46:17,478 | INFO     | right removable region: 708
[2025-11-21 10:46:51] 2025-11-21 15:46:17,479 | INFO     | sum of square deviations: 110511341429.06085
[2025-11-21 10:46:51] 2025-11-21 15:46:17,492 | INFO     | sum of deviations: 1097523213295.6978
[2025-11-21 10:46:51] 2025-11-21 15:46:17,492 | INFO     | mean x: 1763718325.4231312
[2025-11-21 10:46:51] 2025-11-21 15:46:17,492 | INFO     | mean y: 2872224.8110014102
[2025-11-21 10:46:51] 2025-11-21 15:46:17,492 | INFO     | intersect: -17513174353.17281
[2025-11-21 10:46:51] 2025-11-21 15:46:17,493 | INFO     | chi2: 4.797206174257666
[2025-11-21 10:46:51] 2025-11-21 15:46:17,493 | INFO     | current chi2=4.797206174257666 (change=46.17722116896384 %)
[2025-11-21 10:46:51] 2025-11-21 15:46:17,494 | INFO     | sum of square deviations: 108189606398.15897
[2025-11-21 10:46:51] 2025-11-21 15:46:17,507 | INFO     | sum of deviations: 879078483970.2849
[2025-11-21 10:46:51] 2025-11-21 15:46:17,507 | INFO     | mean x: 1763718477.9261363
[2025-11-21 10:46:51] 2025-11-21 15:46:17,507 | INFO     | mean y: 2886561.3323863638
[2025-11-21 10:46:51] 2025-11-21 15:46:17,507 | INFO     | intersect: -14327944443.077938
[2025-11-21 10:46:51] 2025-11-21 15:46:17,508 | INFO     | chi2: 2.3400437569275248
[2025-11-21 10:46:51] 2025-11-21 15:46:17,508 | INFO     | current chi2=2.3400437569275248 (change=51.22069654866085 %)
[2025-11-21 10:46:51] 2025-11-21 15:46:17,509 | INFO     | sum of square deviations: 105900787942.65517
[2025-11-21 10:46:51] 2025-11-21 15:46:17,522 | INFO     | sum of deviations: 831302164037.8489
[2025-11-21 10:46:51] 2025-11-21 15:46:17,522 | INFO     | mean x: 1763718630.4234622
[2025-11-21 10:46:51] 2025-11-21 15:46:17,522 | INFO     | mean y: 2889744.557939914
[2025-11-21 10:46:51] 2025-11-21 15:46:17,523 | INFO     | intersect: -13841984714.910927
[2025-11-21 10:46:51] 2025-11-21 15:46:17,524 | INFO     | chi2: 2.2947886921556493
[2025-11-21 10:46:51] 2025-11-21 15:46:17,524 | INFO     | current chi2=2.2947886921556493 (change=1.9339409631935824 %)
[2025-11-21 10:46:51] 2025-11-21 15:46:17,524 | INFO     | left removable region: 30
[2025-11-21 10:46:51] 2025-11-21 15:46:17,525 | INFO     | sum of square deviations: 96640167576.20824
[2025-11-21 10:46:51] 2025-11-21 15:46:17,536 | INFO     | sum of deviations: 931432934031.0531
[2025-11-21 10:46:51] 2025-11-21 15:46:17,537 | INFO     | mean x: 1763718904.9159293
[2025-11-21 10:46:51] 2025-11-21 15:46:17,537 | INFO     | mean y: 2908622.439528024
[2025-11-21 10:46:51] 2025-11-21 15:46:17,537 | INFO     | intersect: -16996087919.204674
[2025-11-21 10:46:51] 2025-11-21 15:46:17,538 | INFO     | chi2: 0.15089163279005327
[2025-11-21 10:46:51] 2025-11-21 15:46:17,538 | INFO     | current memory leak: 9.64 B/s (using 678 data points, chi2=0.15)
[2025-11-21 10:46:51] 2025-11-21 15:46:17,539 | INFO     | could have reported an average CPU frequency of 2602 MHz (28 samples)
[2025-11-21 10:46:51] 2025-11-21 15:46:17,539 | INFO     | ..............................
[2025-11-21 10:46:51] 2025-11-21 15:46:17,539 | INFO     | . Timing measurements:
[2025-11-21 10:46:51] 2025-11-21 15:46:17,539 | INFO     | . get job = 0 s
[2025-11-21 10:46:51] 2025-11-21 15:46:17,539 | INFO     | . initial setup = 6 s
[2025-11-21 10:46:51] 2025-11-21 15:46:17,540 | INFO     | . payload setup = 36 s
[2025-11-21 10:46:51] 2025-11-21 15:46:17,540 | INFO     | . stage-in = 0 s
[2025-11-21 10:46:51] 2025-11-21 15:46:17,540 | INFO     | . payload execution = 43563 s
[2025-11-21 10:46:51] 2025-11-21 15:46:17,540 | INFO     | . stage-out = 3 s
[2025-11-21 10:46:51] 2025-11-21 15:46:17,540 | INFO     | . log creation = 0 s
[2025-11-21 10:46:51] 2025-11-21 15:46:17,540 | INFO     | ..............................
[2025-11-21 10:46:51] 2025-11-21 15:46:17,645 | INFO     | 
[2025-11-21 10:46:51] 2025-11-21 15:46:17,646 | INFO     | job summary report
[2025-11-21 10:46:51] 2025-11-21 15:46:17,646 | INFO     | --------------------------------------------------
[2025-11-21 10:46:51] 2025-11-21 15:46:17,646 | INFO     | PanDA job id: 6893874384
[2025-11-21 10:46:51] 2025-11-21 15:46:17,646 | INFO     | task id: 47523449
[2025-11-21 10:46:51] 2025-11-21 15:46:17,646 | INFO     | errors: (none)
[2025-11-21 10:46:51] 2025-11-21 15:46:17,646 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 10:46:51] 2025-11-21 15:46:17,646 | INFO     | pilot state: finished 
[2025-11-21 10:46:51] 2025-11-21 15:46:17,647 | INFO     | transexitcode: 0
[2025-11-21 10:46:51] 2025-11-21 15:46:17,647 | INFO     | exeerrorcode: 0
[2025-11-21 10:46:51] 2025-11-21 15:46:17,647 | INFO     | exeerrordiag: 
[2025-11-21 10:46:51] 2025-11-21 15:46:17,647 | INFO     | exitcode: 0
[2025-11-21 10:46:51] 2025-11-21 15:46:17,647 | INFO     | exitmsg: OK
[2025-11-21 10:46:51] 2025-11-21 15:46:17,647 | INFO     | cpuconsumptiontime: 292187 s
[2025-11-21 10:46:51] 2025-11-21 15:46:17,647 | INFO     | nevents: 1000
[2025-11-21 10:46:51] 2025-11-21 15:46:17,647 | INFO     | neventsw: 0
[2025-11-21 10:46:51] 2025-11-21 15:46:17,647 | INFO     | pid: 1885533
[2025-11-21 10:46:51] 2025-11-21 15:46:17,648 | INFO     | pgrp: 1885533
[2025-11-21 10:46:51] 2025-11-21 15:46:17,648 | INFO     | corecount: 8
[2025-11-21 10:46:51] 2025-11-21 15:46:17,648 | INFO     | event service: False
[2025-11-21 10:46:51] 2025-11-21 15:46:17,648 | INFO     | sizes: {0: 2298579, 1: 2298663, 2: 2298862, 13: 2298862, 23: 2298918, 26: 2299208, 34: 2299364, 43603: 2344499, 43604: 2344498, 43607: 2353548, 43608: 2353604, 436
[2025-11-21 10:46:51] 2025-11-21 15:46:17,648 | INFO     | --------------------------------------------------
[2025-11-21 10:46:51] 2025-11-21 15:46:17,648 | INFO     | 
[2025-11-21 10:46:51] 2025-11-21 15:46:17,648 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-21 10:46:51] 2025-11-21 15:46:17,667 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 10:46:51] 2025-11-21 15:46:17,667 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 10:46:51] 2025-11-21 15:46:17,667 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 10:46:51] 2025-11-21 15:46:17,667 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 10:46:51] 2025-11-21 15:46:17,668 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 10:46:51] 2025-11-21 15:46:17,668 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 10:46:51] 2025-11-21 15:46:17,668 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 10:46:51] 2025-11-21 15:46:17,668 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 10:46:51] 2025-11-21 15:46:17,668 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 10:46:51] 2025-11-21 15:46:17,668 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 10:46:51] 2025-11-21 15:46:17,668 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 10:46:51] 2025-11-21 15:46:17,668 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 10:46:51] 2025-11-21 15:46:17,669 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 10:46:51] 2025-11-21 15:46:17,669 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 10:46:51] 2025-11-21 15:46:17,669 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 10:46:51] 2025-11-21 15:46:17,669 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 10:46:51] 2025-11-21 15:46:17,669 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 10:46:51] 2025-11-21 15:46:17,669 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 10:46:51] 2025-11-21 15:46:17,669 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 10:46:51] 2025-11-21 15:46:17,669 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 10:46:51] 2025-11-21 15:46:17,670 | INFO     | job 6893874384 has completed (purged errors)
[2025-11-21 10:46:51] 2025-11-21 15:46:17,670 | INFO     | overall cleanup function is called
[2025-11-21 10:46:51] 2025-11-21 15:46:18,686 | INFO     | --- collectZombieJob: --- 10, [1885533]
[2025-11-21 10:46:51] 2025-11-21 15:46:18,686 | INFO     | zombie collector waiting for pid 1885533
[2025-11-21 10:46:51] 2025-11-21 15:46:18,686 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 10:46:51] 2025-11-21 15:46:18,686 | INFO     | collected zombie processes
[2025-11-21 10:46:51] 2025-11-21 15:46:18,686 | INFO     | will attempt to kill all subprocesses of pid=1885533
[2025-11-21 10:46:51] 2025-11-21 15:46:18,926 | INFO     | process IDs to be killed: [1885533] (in reverse order)
[2025-11-21 10:46:51] 2025-11-21 15:46:18,995 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 10:46:51] 2025-11-21 15:46:18,995 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 10:46:51] 2025-11-21 15:46:19,002 | INFO     | did not find any defunct processes belonging to 1885533
[2025-11-21 10:46:51] 2025-11-21 15:46:19,007 | INFO     | did not find any defunct processes belonging to 1885533
[2025-11-21 10:46:51] 2025-11-21 15:46:19,009 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 10:46:51] 2025-11-21 15:46:19,009 | INFO     | ready for new job
[2025-11-21 10:46:51] 2025-11-21 15:46:19,009 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 10:46:51] 2025-11-21 15:46:19,013 | INFO     | ***************************************
[2025-11-21 10:46:51] 2025-11-21 15:46:19,013 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 10:46:51] 2025-11-21 15:46:19,014 | INFO     | ***************************************
[2025-11-21 10:46:51] 2025-11-21 15:46:19,014 | INFO     | 
[2025-11-21 10:46:51] 2025-11-21 15:46:19,016 | INFO     | architecture information:
[2025-11-21 10:46:51] 2025-11-21 15:46:19,016 | INFO     | executing command: cat /etc/os-release
[2025-11-21 10:46:51] 2025-11-21 15:46:19,030 | INFO     | cat /etc/os-release:
[2025-11-21 10:46:51] NAME="CentOS Linux"
[2025-11-21 10:46:51] VERSION="7 (Core)"
[2025-11-21 10:46:51] ID="centos"
[2025-11-21 10:46:51] ID_LIKE="rhel fedora"
[2025-11-21 10:46:51] VERSION_ID="7"
[2025-11-21 10:46:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 10:46:51] ANSI_COLOR="0;31"
[2025-11-21 10:46:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 10:46:51] HOME_URL="https://www.centos.org/"
[2025-11-21 10:46:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 10:46:51] 
[2025-11-21 10:46:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 10:46:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 10:46:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 10:46:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 10:46:51] 
[2025-11-21 10:46:51] 2025-11-21 15:46:19,030 | INFO     | ***************************************
[2025-11-21 10:46:51] 2025-11-21 15:46:19,533 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-21 10:46:51] 2025-11-21 15:46:19,549 | INFO     | sufficient remaining disk space (48227155968 B)
[2025-11-21 10:46:51] 2025-11-21 15:46:19,549 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 10:46:51] 2025-11-21 15:46:19,549 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 10:46:51] 2025-11-21 15:46:19,549 | INFO     | update_server=False
[2025-11-21 10:46:51] 2025-11-21 15:46:19,550 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 10:46:51] 2025-11-21 15:46:19,550 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 10:46:51] 2025-11-21 15:46:19,550 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 10:46:51] 2025-11-21 15:46:19,550 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 10:46:51] 2025-11-21 15:46:19,551 | INFO     | aborting loop
[2025-11-21 10:46:51] 2025-11-21 15:46:19,812 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 10:46:51] 2025-11-21 15:46:19,825 | INFO     | all payload control threads have been joined
[2025-11-21 10:46:51] 2025-11-21 15:46:19,826 | INFO     | all data control threads have been joined
[2025-11-21 10:46:51] 2025-11-21 15:46:19,938 | INFO     | all job control threads have been joined
[2025-11-21 10:46:51] 2025-11-21 15:46:20,555 | INFO     | [job] retrieve thread has finished
[2025-11-21 10:46:51] 2025-11-21 15:46:20,556 | INFO     | [job] queue monitor thread has finished
[2025-11-21 10:46:51] 2025-11-21 15:46:20,556 | INFO     | [job] job monitor thread has finished
[2025-11-21 10:46:51] 2025-11-21 15:46:20,588 | INFO     | [payload] validate_post thread has finished
[2025-11-21 10:46:51] 2025-11-21 15:46:20,830 | INFO     | [payload] control thread has finished
[2025-11-21 10:46:51] 2025-11-21 15:46:20,831 | INFO     | [data] control thread has finished
[2025-11-21 10:46:51] 2025-11-21 15:46:20,879 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 10:46:51] 2025-11-21 15:46:20,943 | INFO     | [job] control thread has finished
[2025-11-21 10:46:51] 2025-11-21 15:46:21,078 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 10:46:51] 2025-11-21 15:46:21,261 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 10:46:51] 2025-11-21 15:46:21,555 | INFO     | [data] copytool_out thread has finished
[2025-11-21 10:46:51] 2025-11-21 15:46:21,686 | INFO     | [payload] failed_post thread has finished
[2025-11-21 10:46:51] 2025-11-21 15:46:21,735 | INFO     | [job] validate thread has finished
[2025-11-21 10:46:51] 2025-11-21 15:46:21,839 | INFO     | [data] copytool_in thread has finished
[2025-11-21 10:46:51] 2025-11-21 15:46:23,818 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 10:46:51] 2025-11-21 15:46:30,270 | INFO     | job.realtimelogging is not enabled
[2025-11-21 10:46:51] 2025-11-21 15:46:31,272 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 10:46:51] 2025-11-21 15:46:43,723 | INFO     | [monitor] cgroup control has ended
[2025-11-21 10:46:51] 2025-11-21 15:46:45,772 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140672919361344)>', '<ExcThread(monitor, started 140672417900288)>']
[2025-11-21 10:46:51] 2025-11-21 15:46:50,474 | INFO     | PID=1877283 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 10:46:51] 2025-11-21 15:46:50,475 | INFO     | .. there are 5 such processes running
[2025-11-21 10:46:51] 2025-11-21 15:46:50,475 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 10:46:51] 2025-11-21 15:46:50,475 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 10:46:51] 2025-11-21 15:46:50,475 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 10:46:51] 2025-11-21 15:46:50,475 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 10:46:51] 2025-11-21 15:46:50,475 | INFO     | [monitor] control thread has ended
[2025-11-21 10:46:51] 2025-11-21 15:46:50,797 | INFO     | all workflow threads have been joined
[2025-11-21 10:46:51] 2025-11-21 15:46:50,797 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 10:46:51] 2025-11-21 15:46:50,797 | INFO     | traces error code: 0
[2025-11-21 10:46:51] 2025-11-21 15:46:50,798 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 10:46:51] 2025-11-21 15:46:50,917 [wrapper] ==== pilot stdout END ====
[2025-11-21 10:46:51] 2025-11-21 15:46:50,920 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 10:46:51] 2025-11-21 15:46:50,923 [wrapper] pilotpid: 1877283
[2025-11-21 10:46:51] 2025-11-21 15:46:50,925 [wrapper] Pilot exit status: 0
[2025-11-21 10:46:51] 2025-11-21 15:46:50,934 [wrapper] pandaids: 6893874384
[2025-11-21 10:46:51] 2025-11-21 15:46:50,979 [wrapper] cleanup supervisor_pilot 2883061 1877284
[2025-11-21 10:46:51] 2025-11-21 15:46:50,982 [wrapper] Test setup, not cleaning
[2025-11-21 10:46:51] 2025-11-21 15:46:50,984 [wrapper] apfmon messages muted
[2025-11-21 10:46:51] 2025-11-21 15:46:50,987 [wrapper] ==== wrapper stdout END ====
[2025-11-21 10:46:51] 2025-11-21 15:46:50,989 [wrapper] ==== wrapper stderr END ====
[2025-11-21 10:46:51]  *** Error codes and diagnostics ***
[2025-11-21 10:46:51]     "exeErrorCode": 0,
[2025-11-21 10:46:51]     "exeErrorDiag": "",
[2025-11-21 10:46:51]     "pilotErrorCode": 0,
[2025-11-21 10:46:51]     "pilotErrorDiag": "",
[2025-11-21 10:46:51]  *** Listing of results directory ***
[2025-11-21 10:46:51] total 1301992
[2025-11-21 10:46:51] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 11:00 pilot3.tar.gz
[2025-11-21 10:46:51] -rwx------. 1 boincer umatlas     36292 Nov 20 11:04 runpilot2-wrapper.sh
[2025-11-21 10:46:51] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 11:04 queuedata.json
[2025-11-21 10:46:51] -rw-r--r--. 1 boincer umatlas       100 Nov 20 22:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 10:46:51] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 20 22:37 run_atlas
[2025-11-21 10:46:51] -rw-r--r--. 1 boincer umatlas       105 Nov 20 22:37 job.xml
[2025-11-21 10:46:51] -rw-r--r--. 2 boincer umatlas 409196504 Nov 20 22:37 EVNT.47493127._000716.pool.root.1
[2025-11-21 10:46:51] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 22:37 start_atlas.sh
[2025-11-21 10:46:51] drwxrwx--x. 2 boincer umatlas      4096 Nov 20 22:37 shared
[2025-11-21 10:46:51] -rw-r--r--. 2 boincer umatlas    590097 Nov 20 22:37 input.tar.gz
[2025-11-21 10:46:51] -rw-r--r--. 1 boincer umatlas         0 Nov 20 22:37 boinc_lockfile
[2025-11-21 10:46:51] -rw-r--r--. 1 boincer umatlas      2785 Nov 20 22:37 pandaJob.out
[2025-11-21 10:46:51] -rw-------. 1 boincer umatlas        57 Nov 20 22:37 setup.sh.local
[2025-11-21 10:46:51] -rw-------. 1 boincer umatlas    989817 Nov 20 22:38 agis_schedconf.cvmfs.json
[2025-11-21 10:46:51] drwx------. 5 boincer umatlas      4096 Nov 20 22:38 pilot3
[2025-11-21 10:46:51] -rw-r--r--. 1 boincer umatlas       533 Nov 21 10:37 boinc_task_state.xml
[2025-11-21 10:46:51] -rw-------. 1 boincer umatlas 903893961 Nov 21 10:45 HITS.47523449._007157.pool.root.1
[2025-11-21 10:46:51] -rw-r--r--. 1 boincer umatlas      6663 Nov 21 10:45 init_data.xml
[2025-11-21 10:46:51] -rw-------. 1 boincer umatlas      1050 Nov 21 10:46 memory_monitor_summary.json
[2025-11-21 10:46:51] -rw-------. 1 boincer umatlas   1526164 Nov 21 10:46 agis_ddmendpoints.agis.ALL.json
[2025-11-21 10:46:51] -rw-------. 1 boincer umatlas   1971691 Nov 21 10:46 log.47523449._007157.job.log.tgz.1
[2025-11-21 10:46:51] -rw-------. 1 boincer umatlas        95 Nov 21 10:46 pilot_heartbeat.json
[2025-11-21 10:46:51] -rw-------. 1 boincer umatlas      8620 Nov 21 10:46 heartbeat.json
[2025-11-21 10:46:51] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 10:46 boinc_mmap_file
[2025-11-21 10:46:51] -rw-r--r--. 1 boincer umatlas        29 Nov 21 10:46 wrapper_checkpoint.txt
[2025-11-21 10:46:51] -rw-------. 1 boincer umatlas      4895 Nov 21 10:46 pilotlog.txt
[2025-11-21 10:46:51] -rw-------. 1 boincer umatlas   6140843 Nov 21 10:46 log.47523449._007157.job.log.1
[2025-11-21 10:46:51] -rw-------. 1 boincer umatlas       353 Nov 21 10:46 output.list
[2025-11-21 10:46:51] -rw-r--r--. 1 boincer umatlas       620 Nov 21 10:46 runtime_log
[2025-11-21 10:46:51] -rw-------. 1 boincer umatlas   8130560 Nov 21 10:46 result.tar.gz
[2025-11-21 10:46:51] -rw-r--r--. 1 boincer umatlas      9343 Nov 21 10:46 runtime_log.err
[2025-11-21 10:46:51] -rw-------. 1 boincer umatlas       661 Nov 21 10:46 8iLODmkJMg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmwsGKDmvZMeTn.diag
[2025-11-21 10:46:51] -rw-r--r--. 1 boincer umatlas     21353 Nov 21 10:46 stderr.txt
[2025-11-21 10:46:51] HITS file was successfully produced:
[2025-11-21 10:46:51] -rw-------. 1 boincer umatlas 903893961 Nov 21 10:45 shared/HITS.pool.root.1
[2025-11-21 10:46:51]  *** Contents of shared directory: ***
[2025-11-21 10:46:51] total 1290860
[2025-11-21 10:46:51] -rw-r--r--. 2 boincer umatlas 409196504 Nov 20 22:37 ATLAS.root_0
[2025-11-21 10:46:51] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 22:37 start_atlas.sh
[2025-11-21 10:46:51] -rw-r--r--. 2 boincer umatlas    590097 Nov 20 22:37 input.tar.gz
[2025-11-21 10:46:51] -rw-------. 1 boincer umatlas 903893961 Nov 21 10:45 HITS.pool.root.1
[2025-11-21 10:46:51] -rw-------. 1 boincer umatlas   8130560 Nov 21 10:46 result.tar.gz
10:46:52 (1873220): run_atlas exited; CPU time 292365.068541
10:46:52 (1873220): called boinc_finish(0)

</stderr_txt>
]]>

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