Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:59:46 (26100): wrapper (7.7.26015): starting
03:59:46 (26100): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 03:59:46] Arguments: --nthreads 8
[2025-11-24 03:59:46] Threads: 8
[2025-11-24 03:59:46] Checking for CVMFS
[2025-11-24 03:59:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 03:59:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 03:59:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 03:59:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 03:59:49] 2.11.2.0 18802 281872 141204 153229 2 118 13997218 25165825 4462 130560 2 138561645 99.892 73691851 2811 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 03:59:49] CVMFS is ok
[2025-11-24 03:59:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 03:59:49] Checking for apptainer binary...
[2025-11-24 03:59:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 03:59:49] Running /usr/bin/apptainer --version
[2025-11-24 03:59:49] apptainer version 1.3.2-1.el7
[2025-11-24 03:59:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 04:00:06] cg-vwn230.simple-grid.lan
[2025-11-24 04:00:06] apptainer works
[2025-11-24 04:00:06] Set ATHENA_PROC_NUMBER=8
[2025-11-24 04:00:06] Set ATHENA_CORE_NUMBER=8
[2025-11-24 04:00:07] Starting ATLAS job with PandaID=6893874426
[2025-11-24 04:00:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 01:49:21]  *** The last 200 lines of the pilot log: ***
[2025-11-25 01:49:21] 2025-11-25 00:48:04,353 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:49:21] 2025-11-25 00:48:04,481 | INFO     | time since job start (78250s) is within the limit (172800.0s)
[2025-11-25 01:49:21] 2025-11-25 00:48:06,491 | INFO     | time since job start (78252s) is within the limit (172800.0s)
[2025-11-25 01:49:21] 2025-11-25 00:48:06,857 | INFO     | monitor loop #5250: job 0:6893874426 is in state 'finished'
[2025-11-25 01:49:21] 2025-11-25 00:48:06,858 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:49:21] 2025-11-25 00:48:08,497 | INFO     | time since job start (78254s) is within the limit (172800.0s)
[2025-11-25 01:49:21] 2025-11-25 00:48:09,366 | INFO     | monitor loop #5251: job 0:6893874426 is in state 'finished'
[2025-11-25 01:49:21] 2025-11-25 00:48:09,367 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:49:21] 2025-11-25 00:48:10,512 | INFO     | time since job start (78256s) is within the limit (172800.0s)
[2025-11-25 01:49:21] 2025-11-25 00:48:11,872 | INFO     | monitor loop #5252: job 0:6893874426 is in state 'finished'
[2025-11-25 01:49:21] 2025-11-25 00:48:11,873 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:49:21] 2025-11-25 00:48:12,520 | INFO     | time since job start (78258s) is within the limit (172800.0s)
[2025-11-25 01:49:21] 2025-11-25 00:48:14,386 | INFO     | monitor loop #5253: job 0:6893874426 is in state 'finished'
[2025-11-25 01:49:21] 2025-11-25 00:48:14,387 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:49:21] 2025-11-25 00:48:14,527 | INFO     | time since job start (78260s) is within the limit (172800.0s)
[2025-11-25 01:49:21] 2025-11-25 00:48:16,157 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 01:49:21] 2025-11-25 00:48:16,158 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 01:49:21] 2025-11-25 00:48:16,159 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6893874426/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 01:49:21] 2025-11-25 00:48:16,160 | INFO     | extracted standard info from prmon json
[2025-11-25 01:49:21] 2025-11-25 00:48:16,160 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 01:49:21] 2025-11-25 00:48:16,160 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 01:49:21] 2025-11-25 00:48:16,185 | INFO     | fitting pss+swap vs Time
[2025-11-25 01:49:21] 2025-11-25 00:48:16,187 | INFO     | sum of square deviations: 639681664461.3245
[2025-11-25 01:49:21] 2025-11-25 00:48:16,237 | INFO     | sum of deviations: 2443220964700.4917
[2025-11-25 01:49:21] 2025-11-25 00:48:16,238 | INFO     | mean x: 1763992743.0667715
[2025-11-25 01:49:21] 2025-11-25 00:48:16,238 | INFO     | mean y: 2840663.8177533387
[2025-11-25 01:49:21] 2025-11-25 00:48:16,238 | INFO     | intersect: -6734610619.969728
[2025-11-25 01:49:21] 2025-11-25 00:48:16,240 | INFO     | chi2: 22.328978704383033
[2025-11-25 01:49:21] 2025-11-25 00:48:16,242 | INFO     | sum of square deviations: 632174161130.6123
[2025-11-25 01:49:21] 2025-11-25 00:48:16,296 | INFO     | sum of deviations: 2859613579111.9077
[2025-11-25 01:49:21] 2025-11-25 00:48:16,297 | INFO     | mean x: 1763992590.570978
[2025-11-25 01:49:21] 2025-11-25 00:48:16,297 | INFO     | mean y: 2849120.606466877
[2025-11-25 01:49:21] 2025-11-25 00:48:16,297 | INFO     | intersect: -7976498147.285678
[2025-11-25 01:49:21] 2025-11-25 00:48:16,299 | INFO     | chi2: 19.132578284558548
[2025-11-25 01:49:21] 2025-11-25 00:48:16,299 | INFO     | current chi2=19.132578284558548 (change=14.315031879165401 %)
[2025-11-25 01:49:21] 2025-11-25 00:48:16,299 | INFO     | right removable region: 1267
[2025-11-25 01:49:21] 2025-11-25 00:48:16,301 | INFO     | sum of square deviations: 632173332750.6118
[2025-11-25 01:49:21] 2025-11-25 00:48:16,352 | INFO     | sum of deviations: 1930260763998.8481
[2025-11-25 01:49:21] 2025-11-25 00:48:16,353 | INFO     | mean x: 1763992895.570978
[2025-11-25 01:49:21] 2025-11-25 00:48:16,353 | INFO     | mean y: 2851081.4794952683
[2025-11-25 01:49:21] 2025-11-25 00:48:16,353 | INFO     | intersect: -5383276579.866531
[2025-11-25 01:49:21] 2025-11-25 00:48:16,354 | INFO     | chi2: 18.03006894055945
[2025-11-25 01:49:21] 2025-11-25 00:48:16,355 | INFO     | current chi2=18.03006894055945 (change=19.25260362660356 %)
[2025-11-25 01:49:21] 2025-11-25 00:48:16,355 | INFO     | left removable region: 10
[2025-11-25 01:49:21] 2025-11-25 00:48:16,357 | INFO     | sum of square deviations: 615863271626.8839
[2025-11-25 01:49:21] 2025-11-25 00:48:16,404 | INFO     | sum of deviations: 1994071890614.0295
[2025-11-25 01:49:21] 2025-11-25 00:48:16,405 | INFO     | mean x: 1763992865.08035
[2025-11-25 01:49:21] 2025-11-25 00:48:16,405 | INFO     | mean y: 2870974.7621320602
[2025-11-25 01:49:21] 2025-11-25 00:48:16,405 | INFO     | intersect: -5708670449.373159
[2025-11-25 01:49:21] 2025-11-25 00:48:16,407 | INFO     | chi2: 10.686279630296236
[2025-11-25 01:49:21] 2025-11-25 00:48:16,407 | INFO     | current memory leak: 3.24 B/s (using 1257 data points, chi2=10.69)
[2025-11-25 01:49:21] 2025-11-25 00:48:16,409 | INFO     | could have reported an average CPU frequency of 1999 MHz (43 samples)
[2025-11-25 01:49:21] 2025-11-25 00:48:16,409 | INFO     | ..............................
[2025-11-25 01:49:21] 2025-11-25 00:48:16,409 | INFO     | . Timing measurements:
[2025-11-25 01:49:21] 2025-11-25 00:48:16,409 | INFO     | . get job = 0 s
[2025-11-25 01:49:21] 2025-11-25 00:48:16,409 | INFO     | . initial setup = 13 s
[2025-11-25 01:49:21] 2025-11-25 00:48:16,410 | INFO     | . payload setup = 151 s
[2025-11-25 01:49:21] 2025-11-25 00:48:16,410 | INFO     | . stage-in = 0 s
[2025-11-25 01:49:21] 2025-11-25 00:48:16,410 | INFO     | . payload execution = 77781 s
[2025-11-25 01:49:21] 2025-11-25 00:48:16,410 | INFO     | . stage-out = 4 s
[2025-11-25 01:49:21] 2025-11-25 00:48:16,410 | INFO     | . log creation = 1 s
[2025-11-25 01:49:21] 2025-11-25 00:48:16,410 | INFO     | ..............................
[2025-11-25 01:49:21] 2025-11-25 00:48:16,534 | INFO     | time since job start (78262s) is within the limit (172800.0s)
[2025-11-25 01:49:21] 2025-11-25 00:48:16,715 | INFO     | 
[2025-11-25 01:49:21] 2025-11-25 00:48:16,716 | INFO     | job summary report
[2025-11-25 01:49:21] 2025-11-25 00:48:16,716 | INFO     | --------------------------------------------------
[2025-11-25 01:49:21] 2025-11-25 00:48:16,716 | INFO     | PanDA job id: 6893874426
[2025-11-25 01:49:21] 2025-11-25 00:48:16,716 | INFO     | task id: 47523449
[2025-11-25 01:49:21] 2025-11-25 00:48:16,716 | INFO     | errors: (none)
[2025-11-25 01:49:21] 2025-11-25 00:48:16,716 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 01:49:21] 2025-11-25 00:48:16,716 | INFO     | pilot state: finished 
[2025-11-25 01:49:21] 2025-11-25 00:48:16,717 | INFO     | transexitcode: 0
[2025-11-25 01:49:21] 2025-11-25 00:48:16,717 | INFO     | exeerrorcode: 0
[2025-11-25 01:49:21] 2025-11-25 00:48:16,717 | INFO     | exeerrordiag: 
[2025-11-25 01:49:21] 2025-11-25 00:48:16,717 | INFO     | exitcode: 0
[2025-11-25 01:49:21] 2025-11-25 00:48:16,717 | INFO     | exitmsg: OK
[2025-11-25 01:49:21] 2025-11-25 00:48:16,717 | INFO     | cpuconsumptiontime: 337589 s
[2025-11-25 01:49:21] 2025-11-25 00:48:16,717 | INFO     | nevents: 1000
[2025-11-25 01:49:21] 2025-11-25 00:48:16,717 | INFO     | neventsw: 0
[2025-11-25 01:49:21] 2025-11-25 00:48:16,717 | INFO     | pid: 4154
[2025-11-25 01:49:21] 2025-11-25 00:48:16,718 | INFO     | pgrp: 4154
[2025-11-25 01:49:21] 2025-11-25 00:48:16,718 | INFO     | corecount: 8
[2025-11-25 01:49:21] 2025-11-25 00:48:16,718 | INFO     | event service: False
[2025-11-25 01:49:21] 2025-11-25 00:48:16,718 | INFO     | sizes: {0: 2297927, 1: 2298612, 2: 2298811, 13: 2298811, 23: 2298867, 34: 2298895, 45: 2299051, 55: 2299079, 66: 2299107, 77: 2299135, 88: 2299191, 99: 2299499, 10
[2025-11-25 01:49:21] 2025-11-25 00:48:16,718 | INFO     | --------------------------------------------------
[2025-11-25 01:49:21] 2025-11-25 00:48:16,718 | INFO     | 
[2025-11-25 01:49:21] 2025-11-25 00:48:16,718 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-11-25 01:49:21] 2025-11-25 00:48:17,274 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 01:49:21] 2025-11-25 00:48:17,274 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 01:49:21] 2025-11-25 00:48:17,274 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 01:49:21] 2025-11-25 00:48:17,274 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 01:49:21] 2025-11-25 00:48:17,274 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 01:49:21] 2025-11-25 00:48:17,274 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 01:49:21] 2025-11-25 00:48:17,275 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 01:49:21] 2025-11-25 00:48:17,275 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 01:49:21] 2025-11-25 00:48:17,275 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 01:49:21] 2025-11-25 00:48:17,275 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 01:49:21] 2025-11-25 00:48:17,275 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 01:49:21] 2025-11-25 00:48:17,275 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 01:49:21] 2025-11-25 00:48:17,275 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 01:49:21] 2025-11-25 00:48:17,275 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 01:49:21] 2025-11-25 00:48:17,275 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 01:49:21] 2025-11-25 00:48:17,276 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 01:49:21] 2025-11-25 00:48:17,276 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 01:49:21] 2025-11-25 00:48:17,276 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 01:49:21] 2025-11-25 00:48:17,276 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 01:49:21] 2025-11-25 00:48:17,276 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 01:49:21] 2025-11-25 00:48:17,276 | INFO     | job 6893874426 has completed (purged errors)
[2025-11-25 01:49:21] 2025-11-25 00:48:17,276 | INFO     | overall cleanup function is called
[2025-11-25 01:49:21] 2025-11-25 00:48:18,301 | INFO     | --- collectZombieJob: --- 10, [4154]
[2025-11-25 01:49:21] 2025-11-25 00:48:18,302 | INFO     | zombie collector waiting for pid 4154
[2025-11-25 01:49:21] 2025-11-25 00:48:18,302 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 01:49:21] 2025-11-25 00:48:18,302 | INFO     | collected zombie processes
[2025-11-25 01:49:21] 2025-11-25 00:48:18,302 | INFO     | will attempt to kill all subprocesses of pid=4154
[2025-11-25 01:49:21] 2025-11-25 00:48:18,394 | INFO     | process IDs to be killed: [4154] (in reverse order)
[2025-11-25 01:49:21] 2025-11-25 00:48:19,496 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 01:49:21] 2025-11-25 00:48:19,496 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 01:49:21] 2025-11-25 00:48:19,498 | INFO     | did not find any defunct processes belonging to 4154
[2025-11-25 01:49:21] 2025-11-25 00:48:19,500 | INFO     | did not find any defunct processes belonging to 4154
[2025-11-25 01:49:21] 2025-11-25 00:48:19,575 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 01:49:21] 2025-11-25 00:48:19,575 | INFO     | ready for new job
[2025-11-25 01:49:21] 2025-11-25 00:48:19,575 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 01:49:21] 2025-11-25 00:48:19,580 | INFO     | ***************************************
[2025-11-25 01:49:21] 2025-11-25 00:48:19,580 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 01:49:21] 2025-11-25 00:48:19,581 | INFO     | ***************************************
[2025-11-25 01:49:21] 2025-11-25 00:48:19,581 | INFO     | 
[2025-11-25 01:49:21] 2025-11-25 00:48:19,581 | INFO     | pilot is running in a VM
[2025-11-25 01:49:21] 2025-11-25 00:48:19,581 | INFO     | architecture information:
[2025-11-25 01:49:21] 2025-11-25 00:48:19,593 | INFO     | executing command: cat /etc/os-release
[2025-11-25 01:49:21] 2025-11-25 00:48:19,893 | INFO     | cat /etc/os-release:
[2025-11-25 01:49:21] NAME="CentOS Linux"
[2025-11-25 01:49:21] VERSION="7 (Core)"
[2025-11-25 01:49:21] ID="centos"
[2025-11-25 01:49:21] ID_LIKE="rhel fedora"
[2025-11-25 01:49:21] VERSION_ID="7"
[2025-11-25 01:49:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 01:49:21] ANSI_COLOR="0;31"
[2025-11-25 01:49:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 01:49:21] HOME_URL="https://www.centos.org/"
[2025-11-25 01:49:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 01:49:21] 
[2025-11-25 01:49:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 01:49:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 01:49:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 01:49:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 01:49:21] 
[2025-11-25 01:49:21] 2025-11-25 00:48:19,893 | INFO     | ***************************************
[2025-11-25 01:49:21] 2025-11-25 00:48:20,396 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-11-25 01:49:21] 2025-11-25 00:48:20,692 | INFO     | sufficient remaining disk space (492894683136 B)
[2025-11-25 01:49:21] 2025-11-25 00:48:20,692 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 01:49:21] 2025-11-25 00:48:20,692 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 01:49:21] 2025-11-25 00:48:20,693 | INFO     | update_server=False
[2025-11-25 01:49:21] 2025-11-25 00:48:20,693 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 01:49:21] 2025-11-25 00:48:20,693 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:49:21] 2025-11-25 00:48:20,693 | INFO     | aborting loop
[2025-11-25 01:49:21] 2025-11-25 00:48:20,696 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 01:49:21] 2025-11-25 00:48:20,930 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 01:49:21] 2025-11-25 00:48:21,166 | INFO     | all data control threads have been joined
[2025-11-25 01:49:21] 2025-11-25 00:48:21,286 | INFO     | all payload control threads have been joined
[2025-11-25 01:49:21] 2025-11-25 00:48:21,548 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:49:21] 2025-11-25 00:48:21,698 | INFO     | [job] retrieve thread has finished
[2025-11-25 01:49:21] 2025-11-25 00:48:21,699 | INFO     | [job] job monitor thread has finished
[2025-11-25 01:49:21] 2025-11-25 00:48:21,752 | INFO     | all job control threads have been joined
[2025-11-25 01:49:21] 2025-11-25 00:48:21,857 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 01:49:21] 2025-11-25 00:48:22,172 | INFO     | [data] control thread has finished
[2025-11-25 01:49:21] 2025-11-25 00:48:22,292 | INFO     | [payload] control thread has finished
[2025-11-25 01:49:21] 2025-11-25 00:48:22,475 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 01:49:21] 2025-11-25 00:48:22,554 | INFO     | [job] queue monitor thread has finished
[2025-11-25 01:49:21] 2025-11-25 00:48:22,595 | INFO     | [payload] validate_post thread has finished
[2025-11-25 01:49:21] 2025-11-25 00:48:22,703 | INFO     | [data] copytool_out thread has finished
[2025-11-25 01:49:21] 2025-11-25 00:48:22,758 | INFO     | [job] control thread has finished
[2025-11-25 01:49:21] 2025-11-25 00:48:22,775 | INFO     | [job] validate thread has finished
[2025-11-25 01:49:21] 2025-11-25 00:48:22,809 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 01:49:21] 2025-11-25 00:48:22,834 | INFO     | [data] copytool_in thread has finished
[2025-11-25 01:49:21] 2025-11-25 00:48:23,152 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 01:49:21] 2025-11-25 00:48:23,263 | INFO     | [payload] failed_post thread has finished
[2025-11-25 01:49:21] 2025-11-25 00:48:24,939 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 01:49:21] 2025-11-25 00:48:49,674 | INFO     | PID=29912 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 01:49:21] 2025-11-25 00:48:49,674 | INFO     | .. there are 2 such processes running
[2025-11-25 01:49:21] 2025-11-25 00:48:49,674 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 01:49:21] 2025-11-25 00:48:49,674 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 01:49:21] 2025-11-25 00:48:49,675 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 01:49:21] 2025-11-25 00:49:10,118 | INFO     | [monitor] cgroup control has ended
[2025-11-25 01:49:21] 2025-11-25 00:49:10,835 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140439762421568)>', '<ExcThread(monitor, started 140439181059840)>']
[2025-11-25 01:49:21] 2025-11-25 00:49:11,805 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 01:49:21] 2025-11-25 00:49:11,806 | INFO     | [monitor] control thread has ended
[2025-11-25 01:49:21] 2025-11-25 00:49:15,861 | INFO     | all workflow threads have been joined
[2025-11-25 01:49:21] 2025-11-25 00:49:15,862 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 01:49:21] 2025-11-25 00:49:15,862 | INFO     | traces error code: 0
[2025-11-25 01:49:21] 2025-11-25 00:49:15,862 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 01:49:21] 2025-11-25 00:49:16,217 [wrapper] ==== pilot stdout END ====
[2025-11-25 01:49:21] 2025-11-25 00:49:16,307 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 01:49:21] 2025-11-25 00:49:16,410 [wrapper] pilotpid: 29912
[2025-11-25 01:49:21] 2025-11-25 00:49:16,461 [wrapper] Pilot exit status: 0
[2025-11-25 01:49:21] 2025-11-25 00:49:16,848 [wrapper] pandaids: 6893874426
[2025-11-25 01:49:21] 2025-11-25 00:49:17,916 [wrapper] cleanup supervisor_pilot 32584 29913
[2025-11-25 01:49:21] 2025-11-25 00:49:18,025 [wrapper] Test setup, not cleaning
[2025-11-25 01:49:21] 2025-11-25 00:49:18,066 [wrapper] apfmon messages muted
[2025-11-25 01:49:21] 2025-11-25 00:49:18,166 [wrapper] ==== wrapper stdout END ====
[2025-11-25 01:49:21] 2025-11-25 00:49:18,279 [wrapper] ==== wrapper stderr END ====
[2025-11-25 01:49:21]  *** Error codes and diagnostics ***
[2025-11-25 01:49:21]     "exeErrorCode": 0,
[2025-11-25 01:49:21]     "exeErrorDiag": "",
[2025-11-25 01:49:21]     "pilotErrorCode": 0,
[2025-11-25 01:49:21]     "pilotErrorDiag": "",
[2025-11-25 01:49:21]  *** Listing of results directory ***
[2025-11-25 01:49:21] total 1330064
[2025-11-25 01:49:21] -rw-r--r--. 1 boinc boinc    576529 Nov 20 17:08 pilot3.tar.gz
[2025-11-25 01:49:21] -rwx------. 1 boinc boinc     36292 Nov 20 17:10 runpilot2-wrapper.sh
[2025-11-25 01:49:21] -rw-r--r--. 1 boinc boinc      5112 Nov 20 17:10 queuedata.json
[2025-11-25 01:49:21] -rw-r--r--. 1 boinc boinc       100 Nov 24 03:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 01:49:21] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 03:59 run_atlas
[2025-11-25 01:49:21] -rw-r--r--. 1 boinc boinc       105 Nov 24 03:59 job.xml
[2025-11-25 01:49:21] -rw-r--r--. 2 boinc boinc 411573779 Nov 24 03:59 EVNT.47493127._000720.pool.root.1
[2025-11-25 01:49:21] -rw-r--r--. 1 boinc boinc      6392 Nov 24 03:59 init_data.xml
[2025-11-25 01:49:21] -rw-r--r--. 2 boinc boinc     15847 Nov 24 03:59 start_atlas.sh
[2025-11-25 01:49:21] drwxrwx--x. 2 boinc boinc        68 Nov 24 03:59 shared
[2025-11-25 01:49:21] -rw-r--r--. 2 boinc boinc    590095 Nov 24 03:59 input.tar.gz
[2025-11-25 01:49:21] -rw-r--r--. 1 boinc boinc         0 Nov 24 03:59 boinc_lockfile
[2025-11-25 01:49:21] -rw-r--r--. 1 boinc boinc      2784 Nov 24 04:00 pandaJob.out
[2025-11-25 01:49:21] -rw-------. 1 boinc boinc    989786 Nov 24 04:03 agis_schedconf.cvmfs.json
[2025-11-25 01:49:21] drwx------. 5 boinc boinc      4096 Nov 24 04:03 pilot3
[2025-11-25 01:49:21] -rw-r--r--. 1 boinc boinc       533 Nov 25 01:23 boinc_task_state.xml
[2025-11-25 01:49:21] -rw-------. 1 boinc boinc 920970185 Nov 25 01:45 HITS.47523449._007199.pool.root.1
[2025-11-25 01:49:21] -rw-------. 1 boinc boinc      1033 Nov 25 01:46 memory_monitor_summary.json
[2025-11-25 01:49:21] -rw-------. 1 boinc boinc   1516227 Nov 25 01:46 agis_ddmendpoints.agis.ALL.json
[2025-11-25 01:49:21] -rw-------. 1 boinc boinc   2392963 Nov 25 01:46 log.47523449._007199.job.log.tgz.1
[2025-11-25 01:49:21] -rw-------. 1 boinc boinc        95 Nov 25 01:47 pilot_heartbeat.json
[2025-11-25 01:49:21] -rw-------. 1 boinc boinc      8629 Nov 25 01:48 heartbeat.json
[2025-11-25 01:49:21] -rw-r--r--. 1 boinc boinc        29 Nov 25 01:49 wrapper_checkpoint.txt
[2025-11-25 01:49:21] -rw-r--r--. 1 boinc boinc      8192 Nov 25 01:49 boinc_mmap_file
[2025-11-25 01:49:21] -rw-------. 1 boinc boinc      4884 Nov 25 01:49 pilotlog.txt
[2025-11-25 01:49:21] -rw-------. 1 boinc boinc  10375081 Nov 25 01:49 log.47523449._007199.job.log.1
[2025-11-25 01:49:21] -rw-------. 1 boinc boinc       353 Nov 25 01:49 output.list
[2025-11-25 01:49:21] -rw-r--r--. 1 boinc boinc       620 Nov 25 01:49 runtime_log
[2025-11-25 01:49:21] -rw-------. 1 boinc boinc  12789760 Nov 25 01:49 result.tar.gz
[2025-11-25 01:49:21] -rw-------. 1 boinc boinc       662 Nov 25 01:49 ZdQLDm5PMg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmIHIKDmubiQAn.diag
[2025-11-25 01:49:21] -rw-r--r--. 1 boinc boinc      8817 Nov 25 01:49 runtime_log.err
[2025-11-25 01:49:21] -rw-r--r--. 1 boinc boinc     21437 Nov 25 01:49 stderr.txt
[2025-11-25 01:49:21] HITS file was successfully produced:
[2025-11-25 01:49:21] -rw-------. 1 boinc boinc 920970185 Nov 25 01:45 shared/HITS.pool.root.1
[2025-11-25 01:49:21]  *** Contents of shared directory: ***
[2025-11-25 01:49:21] total 1314404
[2025-11-25 01:49:21] -rw-r--r--. 2 boinc boinc 411573779 Nov 24 03:59 ATLAS.root_0
[2025-11-25 01:49:21] -rw-r--r--. 2 boinc boinc     15847 Nov 24 03:59 start_atlas.sh
[2025-11-25 01:49:21] -rw-r--r--. 2 boinc boinc    590095 Nov 24 03:59 input.tar.gz
[2025-11-25 01:49:21] -rw-------. 1 boinc boinc 920970185 Nov 25 01:45 HITS.pool.root.1
[2025-11-25 01:49:21] -rw-------. 1 boinc boinc  12789760 Nov 25 01:49 result.tar.gz
01:49:23 (26100): run_atlas exited; CPU time 337780.052283
01:49:23 (26100): called boinc_finish(0)

</stderr_txt>
]]>

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