Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:42 (1972168): wrapper (7.7.26015): starting
00:02:42 (1972168): wrapper: running run_atlas (--nthreads 9)
[2025-11-21 00:02:42] Arguments: --nthreads 9
[2025-11-21 00:02:42] Threads: 9
[2025-11-21 00:02:42] Checking for CVMFS
[2025-11-21 00:02:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 00:02:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 00:02:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 00:02:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 00:02:44] 2.13.3.0 1933508 19606 240264 153108 3 574 22656529 32503808 27510 16776704 0 90455078 99.460 119818321 39822 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-21 00:02:44] CVMFS is ok
[2025-11-21 00:02:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 00:02:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 00:02:44] Further information can be found at the LHC@home message board.
[2025-11-21 00:02:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 00:02:44] Checking for apptainer binary...
[2025-11-21 00:02:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 00:02:44] Running /usr/bin/apptainer --version
[2025-11-21 00:02:44] apptainer version 1.4.4-1.el9
[2025-11-21 00:02:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 00:02:45] c7-3-16.aglt2.org
[2025-11-21 00:02:45] apptainer works
[2025-11-21 00:02:45] Set ATHENA_PROC_NUMBER=9
[2025-11-21 00:02:45] Set ATHENA_CORE_NUMBER=9
[2025-11-21 00:02:45] Starting ATLAS job with PandaID=6893852682
[2025-11-21 00:02:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
02:40:07 (1972168): BOINC client no longer exists - exiting
02:40:07 (1972168): timer handler: client dead, exiting
02:45:47 (2977642): wrapper (7.7.26015): starting
02:45:47 (2977642): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 02:45:47] Arguments: --nthreads 8
[2025-11-21 02:45:47] Threads: 8
[2025-11-21 02:45:47] This job has been restarted, cleaning up previous attempt
[2025-11-21 02:45:47] Checking for CVMFS
[2025-11-21 02:45:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 02:45:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 02:45:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 02:45:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 02:45:48] 2.13.3.0 1933508 19769 228560 153113 1 327 23232683 32503809 20481 16776704 0 91796558 99.467 119959591 39802 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-21 02:45:48] CVMFS is ok
[2025-11-21 02:45:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 02:45:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 02:45:48] Further information can be found at the LHC@home message board.
[2025-11-21 02:45:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 02:45:48] Checking for apptainer binary...
[2025-11-21 02:45:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 02:45:48] Running /usr/bin/apptainer --version
[2025-11-21 02:45:48] apptainer version 1.4.4-1.el9
[2025-11-21 02:45:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 02:45:48] c7-3-16.aglt2.org
[2025-11-21 02:45:48] apptainer works
[2025-11-21 02:45:48] Set ATHENA_PROC_NUMBER=8
[2025-11-21 02:45:48] Set ATHENA_CORE_NUMBER=8
[2025-11-21 02:45:48] Starting ATLAS job with PandaID=6893852682
[2025-11-21 02:45:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 12:58:11]  *** The last 200 lines of the pilot log: ***
[2025-11-21 12:58:11] 2025-11-21 17:57:37,114 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 12:58:11] 2025-11-21 17:57:37,114 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 12:58:11] 2025-11-21 17:57:37,121 | INFO     | fitting pss+swap vs Time
[2025-11-21 12:58:11] 2025-11-21 17:57:37,122 | INFO     | sum of square deviations: 67311733657.96663
[2025-11-21 12:58:11] 2025-11-21 17:57:37,128 | INFO     | sum of deviations: 406249949809.36865
[2025-11-21 12:58:11] 2025-11-21 17:57:37,129 | INFO     | mean x: 1763729494.091514
[2025-11-21 12:58:11] 2025-11-21 17:57:37,129 | INFO     | mean y: 2884737.4841930117
[2025-11-21 12:58:11] 2025-11-21 17:57:37,129 | INFO     | intersect: -10641842110.480124
[2025-11-21 12:58:11] 2025-11-21 17:57:37,129 | INFO     | chi2: 7.6834929633798845
[2025-11-21 12:58:11] 2025-11-21 17:57:37,130 | INFO     | sum of square deviations: 65645837376.959755
[2025-11-21 12:58:11] 2025-11-21 17:57:37,136 | INFO     | sum of deviations: 625497099586.3453
[2025-11-21 12:58:11] 2025-11-21 17:57:37,136 | INFO     | mean x: 1763729341.600671
[2025-11-21 12:58:11] 2025-11-21 17:57:37,136 | INFO     | mean y: 2904807.63590604
[2025-11-21 12:58:11] 2025-11-21 17:57:37,136 | INFO     | intersect: -16802541382.220388
[2025-11-21 12:58:11] 2025-11-21 17:57:37,137 | INFO     | chi2: 3.9803118462219373
[2025-11-21 12:58:11] 2025-11-21 17:57:37,137 | INFO     | current chi2=3.9803118462219373 (change=48.19658369972605 %)
[2025-11-21 12:58:11] 2025-11-21 17:57:37,138 | INFO     | sum of square deviations: 64007626191.06931
[2025-11-21 12:58:11] 2025-11-21 17:57:37,144 | INFO     | sum of deviations: 757118280054.5907
[2025-11-21 12:58:11] 2025-11-21 17:57:37,144 | INFO     | mean x: 1763729189.1082911
[2025-11-21 12:58:11] 2025-11-21 17:57:37,144 | INFO     | mean y: 2917039.2876480543
[2025-11-21 12:58:11] 2025-11-21 17:57:37,144 | INFO     | intersect: -20859465923.542225
[2025-11-21 12:58:11] 2025-11-21 17:57:37,145 | INFO     | chi2: 2.328331326428008
[2025-11-21 12:58:11] 2025-11-21 17:57:37,145 | INFO     | current chi2=2.328331326428008 (change=41.50379627571063 %)
[2025-11-21 12:58:11] 2025-11-21 17:57:37,145 | INFO     | sum of square deviations: 62396831915.06691
[2025-11-21 12:58:11] 2025-11-21 17:57:37,151 | INFO     | sum of deviations: 771964065720.6118
[2025-11-21 12:58:11] 2025-11-21 17:57:37,151 | INFO     | mean x: 1763729036.612628
[2025-11-21 12:58:11] 2025-11-21 17:57:37,151 | INFO     | mean y: 2918435.1877133106
[2025-11-21 12:58:11] 2025-11-21 17:57:37,152 | INFO     | intersect: -21817667580.88233
[2025-11-21 12:58:11] 2025-11-21 17:57:37,152 | INFO     | chi2: 2.226159249950947
[2025-11-21 12:58:11] 2025-11-21 17:57:37,152 | INFO     | current chi2=2.226159249950947 (change=4.38821035981196 %)
[2025-11-21 12:58:11] 2025-11-21 17:57:37,152 | INFO     | right removable region: 585
[2025-11-21 12:58:11] 2025-11-21 17:57:37,153 | INFO     | sum of square deviations: 65645510175.35581
[2025-11-21 12:58:11] 2025-11-21 17:57:37,159 | INFO     | sum of deviations: 257687158024.91873
[2025-11-21 12:58:11] 2025-11-21 17:57:37,159 | INFO     | mean x: 1763729646.5973155
[2025-11-21 12:58:11] 2025-11-21 17:57:37,159 | INFO     | mean y: 2898300.4496644298
[2025-11-21 12:58:11] 2025-11-21 17:57:37,159 | INFO     | intersect: -6920507107.504316
[2025-11-21 12:58:11] 2025-11-21 17:57:37,160 | INFO     | chi2: 5.724851487359158
[2025-11-21 12:58:11] 2025-11-21 17:57:37,160 | INFO     | current chi2=5.724851487359158 (change=25.491550332065927 %)
[2025-11-21 12:58:11] 2025-11-21 17:57:37,160 | INFO     | sum of square deviations: 64007153813.50249
[2025-11-21 12:58:11] 2025-11-21 17:57:37,167 | INFO     | sum of deviations: 216045088135.71072
[2025-11-21 12:58:11] 2025-11-21 17:57:37,167 | INFO     | mean x: 1763729799.0964468
[2025-11-21 12:58:11] 2025-11-21 17:57:37,167 | INFO     | mean y: 2902174.005076142
[2025-11-21 12:58:11] 2025-11-21 17:57:37,167 | INFO     | intersect: -5950263014.430293
[2025-11-21 12:58:11] 2025-11-21 17:57:37,167 | INFO     | chi2: 5.648336406639377
[2025-11-21 12:58:11] 2025-11-21 17:57:37,167 | INFO     | current chi2=5.648336406639377 (change=1.3365426315203286 %)
[2025-11-21 12:58:11] 2025-11-21 17:57:37,167 | INFO     | left removable region: 20
[2025-11-21 12:58:11] 2025-11-21 17:57:37,168 | INFO     | sum of square deviations: 55925891362.750404
[2025-11-21 12:58:11] 2025-11-21 17:57:37,174 | INFO     | sum of deviations: 518080889669.13763
[2025-11-21 12:58:11] 2025-11-21 17:57:37,174 | INFO     | mean x: 1763729616.1132743
[2025-11-21 12:58:11] 2025-11-21 17:57:37,174 | INFO     | mean y: 2942821.3415929205
[2025-11-21 12:58:11] 2025-11-21 17:57:37,174 | INFO     | intersect: -16335725841.530727
[2025-11-21 12:58:11] 2025-11-21 17:57:37,174 | INFO     | chi2: 0.11250068560861735
[2025-11-21 12:58:11] 2025-11-21 17:57:37,175 | INFO     | current memory leak: 9.26 B/s (using 565 data points, chi2=0.11)
[2025-11-21 12:58:11] 2025-11-21 17:57:37,175 | INFO     | could have reported an average CPU frequency of 3141 MHz (24 samples)
[2025-11-21 12:58:11] 2025-11-21 17:57:37,175 | INFO     | ..............................
[2025-11-21 12:58:11] 2025-11-21 17:57:37,175 | INFO     | . Timing measurements:
[2025-11-21 12:58:11] 2025-11-21 17:57:37,175 | INFO     | . get job = 0 s
[2025-11-21 12:58:11] 2025-11-21 17:57:37,175 | INFO     | . initial setup = 1 s
[2025-11-21 12:58:11] 2025-11-21 17:57:37,175 | INFO     | . payload setup = 8 s
[2025-11-21 12:58:11] 2025-11-21 17:57:37,175 | INFO     | . stage-in = 0 s
[2025-11-21 12:58:11] 2025-11-21 17:57:37,176 | INFO     | . payload execution = 36646 s
[2025-11-21 12:58:11] 2025-11-21 17:57:37,176 | INFO     | . stage-out = 3 s
[2025-11-21 12:58:11] 2025-11-21 17:57:37,176 | INFO     | . log creation = 0 s
[2025-11-21 12:58:11] 2025-11-21 17:57:37,176 | INFO     | ..............................
[2025-11-21 12:58:11] 2025-11-21 17:57:37,244 | INFO     | 
[2025-11-21 12:58:11] 2025-11-21 17:57:37,244 | INFO     | job summary report
[2025-11-21 12:58:11] 2025-11-21 17:57:37,244 | INFO     | --------------------------------------------------
[2025-11-21 12:58:11] 2025-11-21 17:57:37,244 | INFO     | PanDA job id: 6893852682
[2025-11-21 12:58:11] 2025-11-21 17:57:37,244 | INFO     | task id: 47523449
[2025-11-21 12:58:11] 2025-11-21 17:57:37,244 | INFO     | errors: (none)
[2025-11-21 12:58:11] 2025-11-21 17:57:37,244 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 12:58:11] 2025-11-21 17:57:37,244 | INFO     | pilot state: finished 
[2025-11-21 12:58:11] 2025-11-21 17:57:37,244 | INFO     | transexitcode: 0
[2025-11-21 12:58:11] 2025-11-21 17:57:37,245 | INFO     | exeerrorcode: 0
[2025-11-21 12:58:11] 2025-11-21 17:57:37,245 | INFO     | exeerrordiag: 
[2025-11-21 12:58:11] 2025-11-21 17:57:37,245 | INFO     | exitcode: 0
[2025-11-21 12:58:11] 2025-11-21 17:57:37,245 | INFO     | exitmsg: OK
[2025-11-21 12:58:11] 2025-11-21 17:57:37,245 | INFO     | cpuconsumptiontime: 196402 s
[2025-11-21 12:58:11] 2025-11-21 17:57:37,245 | INFO     | nevents: 1000
[2025-11-21 12:58:11] 2025-11-21 17:57:37,245 | INFO     | neventsw: 0
[2025-11-21 12:58:11] 2025-11-21 17:57:37,245 | INFO     | pid: 3038695
[2025-11-21 12:58:11] 2025-11-21 17:57:37,245 | INFO     | pgrp: 3038695
[2025-11-21 12:58:11] 2025-11-21 17:57:37,245 | INFO     | corecount: 8
[2025-11-21 12:58:11] 2025-11-21 17:57:37,245 | INFO     | event service: False
[2025-11-21 12:58:11] 2025-11-21 17:57:37,245 | INFO     | sizes: {0: 2298807, 1: 2298807, 6: 2299097, 11: 2299125, 36658: 2340676, 36662: 2349670, 36664: 2349854, 36680: 2350100}
[2025-11-21 12:58:11] 2025-11-21 17:57:37,245 | INFO     | --------------------------------------------------
[2025-11-21 12:58:11] 2025-11-21 17:57:37,245 | INFO     | 
[2025-11-21 12:58:11] 2025-11-21 17:57:37,245 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-21 12:58:11] 2025-11-21 17:57:37,261 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 12:58:11] 2025-11-21 17:57:37,261 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 12:58:11] 2025-11-21 17:57:37,261 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 12:58:11] 2025-11-21 17:57:37,261 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 12:58:11] 2025-11-21 17:57:37,261 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 12:58:11] 2025-11-21 17:57:37,261 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 12:58:11] 2025-11-21 17:57:37,261 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 12:58:11] 2025-11-21 17:57:37,262 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 12:58:11] 2025-11-21 17:57:37,262 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 12:58:11] 2025-11-21 17:57:37,262 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 12:58:11] 2025-11-21 17:57:37,262 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 12:58:11] 2025-11-21 17:57:37,262 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 12:58:11] 2025-11-21 17:57:37,262 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 12:58:11] 2025-11-21 17:57:37,262 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 12:58:11] 2025-11-21 17:57:37,262 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 12:58:11] 2025-11-21 17:57:37,262 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 12:58:11] 2025-11-21 17:57:37,262 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 12:58:11] 2025-11-21 17:57:37,262 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 12:58:11] 2025-11-21 17:57:37,262 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 12:58:11] 2025-11-21 17:57:37,262 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 12:58:11] 2025-11-21 17:57:37,262 | INFO     | job 6893852682 has completed (purged errors)
[2025-11-21 12:58:11] 2025-11-21 17:57:37,263 | INFO     | overall cleanup function is called
[2025-11-21 12:58:11] 2025-11-21 17:57:38,279 | INFO     | --- collectZombieJob: --- 10, [3038695]
[2025-11-21 12:58:11] 2025-11-21 17:57:38,279 | INFO     | zombie collector waiting for pid 3038695
[2025-11-21 12:58:11] 2025-11-21 17:57:38,279 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 12:58:11] 2025-11-21 17:57:38,280 | INFO     | collected zombie processes
[2025-11-21 12:58:11] 2025-11-21 17:57:38,280 | INFO     | will attempt to kill all subprocesses of pid=3038695
[2025-11-21 12:58:11] 2025-11-21 17:57:39,194 | INFO     | process IDs to be killed: [3038695] (in reverse order)
[2025-11-21 12:58:11] 2025-11-21 17:57:39,414 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 12:58:11] 2025-11-21 17:57:39,414 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 12:58:11] 2025-11-21 17:57:39,440 | INFO     | did not find any defunct processes belonging to 3038695
[2025-11-21 12:58:11] 2025-11-21 17:57:39,463 | INFO     | did not find any defunct processes belonging to 3038695
[2025-11-21 12:58:11] 2025-11-21 17:57:39,464 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 12:58:11] 2025-11-21 17:57:39,465 | INFO     | ready for new job
[2025-11-21 12:58:11] 2025-11-21 17:57:39,465 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 12:58:11] 2025-11-21 17:57:39,479 | INFO     | ***************************************
[2025-11-21 12:58:11] 2025-11-21 17:57:39,483 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 12:58:11] 2025-11-21 17:57:39,483 | INFO     | ***************************************
[2025-11-21 12:58:11] 2025-11-21 17:57:39,483 | INFO     | 
[2025-11-21 12:58:11] 2025-11-21 17:57:39,492 | INFO     | architecture information:
[2025-11-21 12:58:11] 2025-11-21 17:57:39,498 | INFO     | executing command: cat /etc/os-release
[2025-11-21 12:58:11] 2025-11-21 17:57:39,540 | INFO     | cat /etc/os-release:
[2025-11-21 12:58:11] NAME="CentOS Linux"
[2025-11-21 12:58:11] VERSION="7 (Core)"
[2025-11-21 12:58:11] ID="centos"
[2025-11-21 12:58:11] ID_LIKE="rhel fedora"
[2025-11-21 12:58:11] VERSION_ID="7"
[2025-11-21 12:58:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 12:58:11] ANSI_COLOR="0;31"
[2025-11-21 12:58:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 12:58:11] HOME_URL="https://www.centos.org/"
[2025-11-21 12:58:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 12:58:11] 
[2025-11-21 12:58:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 12:58:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 12:58:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 12:58:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 12:58:11] 
[2025-11-21 12:58:11] 2025-11-21 17:57:39,541 | INFO     | ***************************************
[2025-11-21 12:58:11] 2025-11-21 17:57:40,044 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-21 12:58:11] 2025-11-21 17:57:40,060 | INFO     | sufficient remaining disk space (87124082688 B)
[2025-11-21 12:58:11] 2025-11-21 17:57:40,060 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 12:58:11] 2025-11-21 17:57:40,061 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 12:58:11] 2025-11-21 17:57:40,061 | INFO     | update_server=False
[2025-11-21 12:58:11] 2025-11-21 17:57:40,061 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 12:58:11] 2025-11-21 17:57:40,061 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 12:58:11] 2025-11-21 17:57:40,352 | INFO     | all payload control threads have been joined
[2025-11-21 12:58:11] 2025-11-21 17:57:40,524 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 12:58:11] 2025-11-21 17:57:40,524 | INFO     | aborting loop
[2025-11-21 12:58:11] 2025-11-21 17:57:40,670 | INFO     | all data control threads have been joined
[2025-11-21 12:58:11] 2025-11-21 17:57:41,049 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 12:58:11] 2025-11-21 17:57:41,065 | INFO     | [job] retrieve thread has finished
[2025-11-21 12:58:11] 2025-11-21 17:57:41,115 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 12:58:11] 2025-11-21 17:57:41,194 | INFO     | [payload] failed_post thread has finished
[2025-11-21 12:58:11] 2025-11-21 17:57:41,332 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 12:58:11] 2025-11-21 17:57:41,358 | INFO     | [payload] control thread has finished
[2025-11-21 12:58:11] 2025-11-21 17:57:41,543 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 12:58:11] 2025-11-21 17:57:41,546 | INFO     | [job] job monitor thread has finished
[2025-11-21 12:58:11] 2025-11-21 17:57:41,558 | INFO     | all job control threads have been joined
[2025-11-21 12:58:11] 2025-11-21 17:57:41,684 | INFO     | [data] control thread has finished
[2025-11-21 12:58:11] 2025-11-21 17:57:41,685 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 12:58:11] 2025-11-21 17:57:41,687 | INFO     | [data] copytool_in thread has finished
[2025-11-21 12:58:11] 2025-11-21 17:57:42,008 | INFO     | [payload] validate_post thread has finished
[2025-11-21 12:58:11] 2025-11-21 17:57:42,069 | INFO     | [data] copytool_out thread has finished
[2025-11-21 12:58:11] 2025-11-21 17:57:42,257 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 12:58:11] 2025-11-21 17:57:42,539 | INFO     | [job] validate thread has finished
[2025-11-21 12:58:11] 2025-11-21 17:57:42,563 | INFO     | [job] control thread has finished
[2025-11-21 12:58:11] 2025-11-21 17:57:43,263 | INFO     | [job] queue monitor thread has finished
[2025-11-21 12:58:11] 2025-11-21 17:57:45,058 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 12:58:11] 2025-11-21 17:58:03,050 | INFO     | [monitor] cgroup control has ended
[2025-11-21 12:58:11] 2025-11-21 17:58:04,937 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140098915673920)>', '<ExcThread(monitor, started 140098075096832)>']
[2025-11-21 12:58:11] 2025-11-21 17:58:09,965 | INFO     | all workflow threads have been joined
[2025-11-21 12:58:11] 2025-11-21 17:58:09,965 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 12:58:11] 2025-11-21 17:58:09,966 | INFO     | traces error code: 0
[2025-11-21 12:58:11] 2025-11-21 17:58:09,966 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 12:58:11] 2025-11-21 17:58:10,613 | INFO     | PID=2993842 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 12:58:11] 2025-11-21 17:58:10,613 | INFO     | .. there are 54 such processes running
[2025-11-21 12:58:11] 2025-11-21 17:58:10,614 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 12:58:11] 2025-11-21 17:58:10,614 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 12:58:11] 2025-11-21 17:58:10,614 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 12:58:11] 2025-11-21 17:58:10,614 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 12:58:11] 2025-11-21 17:58:10,614 | INFO     | [monitor] control thread has ended
[2025-11-21 12:58:11] 2025-11-21 17:58:10,735 [wrapper] ==== pilot stdout END ====
[2025-11-21 12:58:11] 2025-11-21 17:58:10,767 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 12:58:11] 2025-11-21 17:58:10,803 [wrapper] pilotpid: 2993842
[2025-11-21 12:58:11] 2025-11-21 17:58:10,825 [wrapper] Pilot exit status: 0
[2025-11-21 12:58:11] 2025-11-21 17:58:10,901 [wrapper] pandaids: 6893852682 6893852682
[2025-11-21 12:58:11] 2025-11-21 17:58:11,067 [wrapper] cleanup supervisor_pilot 3242172 2993843
[2025-11-21 12:58:11] 2025-11-21 17:58:11,100 [wrapper] Test setup, not cleaning
[2025-11-21 12:58:11] 2025-11-21 17:58:11,109 [wrapper] apfmon messages muted
[2025-11-21 12:58:11] 2025-11-21 17:58:11,112 [wrapper] ==== wrapper stdout END ====
[2025-11-21 12:58:11] 2025-11-21 17:58:11,117 [wrapper] ==== wrapper stderr END ====
[2025-11-21 12:58:11]  *** Error codes and diagnostics ***
[2025-11-21 12:58:11]     "exeErrorCode": 0,
[2025-11-21 12:58:11]     "exeErrorDiag": "",
[2025-11-21 12:58:11]     "pilotErrorCode": 0,
[2025-11-21 12:58:11]     "pilotErrorDiag": "",
[2025-11-21 12:58:11]  *** Listing of results directory ***
[2025-11-21 12:58:11] total 1722752
[2025-11-21 12:58:11] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-21 12:58:11] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 06:54 pilot3.tar.gz
[2025-11-21 12:58:11] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 07:06 queuedata.json
[2025-11-21 12:58:11] -rwx------. 1 boincer umatlas     36292 Nov 20 07:06 runpilot2-wrapper.sh
[2025-11-21 12:58:11] -rw-r--r--. 1 boincer umatlas       100 Nov 21 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 12:58:11] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 00:02 run_atlas
[2025-11-21 12:58:11] -rw-r--r--. 1 boincer umatlas       105 Nov 21 00:02 job.xml
[2025-11-21 12:58:11] -rw-r--r--. 3 boincer umatlas 409608920 Nov 21 00:02 EVNT.47493127._000396.pool.root.1
[2025-11-21 12:58:11] -rw-r--r--. 3 boincer umatlas 409608920 Nov 21 00:02 ATLAS.root_0
[2025-11-21 12:58:11] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 00:02 start_atlas.sh
[2025-11-21 12:58:11] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 00:02 shared
[2025-11-21 12:58:11] -rw-r--r--. 2 boincer umatlas    590098 Nov 21 00:02 input.tar.gz
[2025-11-21 12:58:11] -rw-r--r--. 1 boincer umatlas         0 Nov 21 00:02 boinc_lockfile
[2025-11-21 12:58:11] -rw-r--r--. 1 boincer umatlas      2786 Nov 21 02:45 pandaJob.out
[2025-11-21 12:58:11] -rw-------. 1 boincer umatlas        57 Nov 21 02:45 setup.sh.local
[2025-11-21 12:58:11] -rw-------. 1 boincer umatlas    989817 Nov 21 02:45 agis_schedconf.cvmfs.json
[2025-11-21 12:58:11] -rw-r--r--. 1 boincer umatlas       533 Nov 21 12:42 boinc_task_state.xml
[2025-11-21 12:58:11] -rw-r--r--. 1 boincer umatlas      6948 Nov 21 12:54 init_data.xml
[2025-11-21 12:58:11] -rw-------. 1 boincer umatlas 927927336 Nov 21 12:55 HITS.47523449._003953.pool.root.1
[2025-11-21 12:58:11] -rw-------. 1 boincer umatlas      1057 Nov 21 12:57 memory_monitor_summary.json
[2025-11-21 12:58:11] -rw-------. 1 boincer umatlas   1526164 Nov 21 12:57 agis_ddmendpoints.agis.ALL.json
[2025-11-21 12:58:11] -rw-------. 1 boincer umatlas   1841828 Nov 21 12:57 log.47523449._003953.job.log.tgz.1
[2025-11-21 12:58:11] -rw-------. 1 boincer umatlas      8596 Nov 21 12:57 heartbeat.json
[2025-11-21 12:58:11] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 12:58 boinc_mmap_file
[2025-11-21 12:58:11] -rw-r--r--. 1 boincer umatlas        29 Nov 21 12:58 wrapper_checkpoint.txt
[2025-11-21 12:58:11] -rw-------. 1 boincer umatlas       823 Nov 21 12:58 pilotlog.txt
[2025-11-21 12:58:11] -rw-------. 1 boincer umatlas        96 Nov 21 12:58 pilot_heartbeat.json
[2025-11-21 12:58:11] -rw-------. 1 boincer umatlas   4676481 Nov 21 12:58 log.47523449._003953.job.log.1
[2025-11-21 12:58:11] -rw-------. 1 boincer umatlas       353 Nov 21 12:58 output.list
[2025-11-21 12:58:11] -rw-r--r--. 1 boincer umatlas       620 Nov 21 12:58 runtime_log
[2025-11-21 12:58:11] -rw-------. 1 boincer umatlas   6533120 Nov 21 12:58 result.tar.gz
[2025-11-21 12:58:11] -rw-r--r--. 1 boincer umatlas      9423 Nov 21 12:58 runtime_log.err
[2025-11-21 12:58:11] -rw-------. 1 boincer umatlas       788 Nov 21 12:58 Ig3KDmfbIg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmoiHKDmD1xQXm.diag
[2025-11-21 12:58:11] -rw-r--r--. 1 boincer umatlas     23414 Nov 21 12:58 stderr.txt
[2025-11-21 12:58:11] HITS file was successfully produced:
[2025-11-21 12:58:11] -rw-------. 1 boincer umatlas 927927336 Nov 21 12:55 shared/HITS.pool.root.1
[2025-11-21 12:58:11]  *** Contents of shared directory: ***
[2025-11-21 12:58:11] total 1313172
[2025-11-21 12:58:11] -rw-r--r--. 3 boincer umatlas 409608920 Nov 21 00:02 ATLAS.root_0
[2025-11-21 12:58:11] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 00:02 start_atlas.sh
[2025-11-21 12:58:11] -rw-r--r--. 2 boincer umatlas    590098 Nov 21 00:02 input.tar.gz
[2025-11-21 12:58:11] -rw-------. 1 boincer umatlas 927927336 Nov 21 12:55 HITS.pool.root.1
[2025-11-21 12:58:11] -rw-------. 1 boincer umatlas   6533120 Nov 21 12:58 result.tar.gz
12:58:13 (2977642): run_atlas exited; CPU time 197098.978561
12:58:13 (2977642): called boinc_finish(0)

</stderr_txt>
]]>

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