Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:56:35 (10347): wrapper (7.7.26015): starting
21:56:35 (10347): wrapper: running run_atlas (--nthreads 12)
[2025-11-20 21:56:35] Arguments: --nthreads 12
[2025-11-20 21:56:35] Threads: 12
[2025-11-20 21:56:35] Checking for CVMFS
[2025-11-20 21:56:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 21:56:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 21:56:35] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 21:56:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 21:56:35] 2.11.2.0 6893 109823 90356 153104 1 81 12121076 20275200 1 130560 0 46983808 99.930 5736681 30650 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 21:56:35] CVMFS is ok
[2025-11-20 21:56:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 21:56:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 21:56:35] Further information can be found at the LHC@home message board.
[2025-11-20 21:56:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 21:56:35] Checking for apptainer binary...
[2025-11-20 21:56:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 21:56:35] Running /usr/bin/apptainer --version
[2025-11-20 21:56:35] apptainer version 1.3.2-1.el7
[2025-11-20 21:56:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 21:56:36] c-205-3.aglt2.org
[2025-11-20 21:56:36] apptainer works
[2025-11-20 21:56:36] Set ATHENA_PROC_NUMBER=12
[2025-11-20 21:56:36] Set ATHENA_CORE_NUMBER=12
[2025-11-20 21:56:36] Starting ATLAS job with PandaID=6893838019
[2025-11-20 21:56:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 05:02:40]  *** The last 200 lines of the pilot log: ***
[2025-11-21 05:02:40] 2025-11-21 10:01:49,346 | INFO     | time since job start (25498s) is within the limit (172800.0s)
[2025-11-21 05:02:40] 2025-11-21 10:01:49,353 | INFO     | monitor loop #1912: job 0:6893838019 is in state 'finished'
[2025-11-21 05:02:40] 2025-11-21 10:01:49,353 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 05:02:40] 2025-11-21 10:01:50,469 | INFO     | PID=14173 has CPU usage=11.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-21 05:02:40] 2025-11-21 10:01:50,518 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-21 05:02:40] 2025-11-21 10:01:50,521 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1806.6666666666667
[2025-11-21 05:02:40] 2025-11-21 10:01:50,522 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893838019/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 05:02:40] 2025-11-21 10:01:50,523 | INFO     | extracted standard info from prmon json
[2025-11-21 05:02:40] 2025-11-21 10:01:50,523 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 05:02:40] 2025-11-21 10:01:50,523 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 05:02:40] 2025-11-21 10:01:50,530 | INFO     | fitting pss+swap vs Time
[2025-11-21 05:02:40] 2025-11-21 10:01:50,530 | INFO     | sum of square deviations: 22646892428.80627
[2025-11-21 05:02:40] 2025-11-21 10:01:50,534 | INFO     | sum of deviations: 371359761282.21277
[2025-11-21 05:02:40] 2025-11-21 10:01:50,534 | INFO     | mean x: 1763706559.7057416
[2025-11-21 05:02:40] 2025-11-21 10:01:50,534 | INFO     | mean y: 3404881.6196172247
[2025-11-21 05:02:40] 2025-11-21 10:01:50,534 | INFO     | intersect: -28917545268.304363
[2025-11-21 05:02:40] 2025-11-21 10:01:50,535 | INFO     | chi2: 6.539045408398094
[2025-11-21 05:02:40] 2025-11-21 10:01:50,535 | INFO     | sum of square deviations: 21843917556.092167
[2025-11-21 05:02:40] 2025-11-21 10:01:50,539 | INFO     | sum of deviations: 538013887480.2636
[2025-11-21 05:02:40] 2025-11-21 10:01:50,539 | INFO     | mean x: 1763706407.2082324
[2025-11-21 05:02:40] 2025-11-21 10:01:50,539 | INFO     | mean y: 3436499.334140436
[2025-11-21 05:02:40] 2025-11-21 10:01:50,539 | INFO     | intersect: -43436506820.32496
[2025-11-21 05:02:40] 2025-11-21 10:01:50,540 | INFO     | chi2: 3.2136798856721214
[2025-11-21 05:02:40] 2025-11-21 10:01:50,540 | INFO     | current chi2=3.2136798856721214 (change=50.853990376870705 %)
[2025-11-21 05:02:40] 2025-11-21 10:01:50,540 | INFO     | sum of square deviations: 21060152345.87248
[2025-11-21 05:02:40] 2025-11-21 10:01:50,544 | INFO     | sum of deviations: 591736733105.8474
[2025-11-21 05:02:40] 2025-11-21 10:01:50,544 | INFO     | mean x: 1763706254.7107842
[2025-11-21 05:02:40] 2025-11-21 10:01:50,544 | INFO     | mean y: 3446909.193627451
[2025-11-21 05:02:40] 2025-11-21 10:01:50,544 | INFO     | intersect: -49552214426.06025
[2025-11-21 05:02:40] 2025-11-21 10:01:50,545 | INFO     | chi2: 2.6386383277948666
[2025-11-21 05:02:40] 2025-11-21 10:01:50,545 | INFO     | current chi2=2.6386383277948666 (change=17.89355437798959 %)
[2025-11-21 05:02:40] 2025-11-21 10:01:50,545 | INFO     | right removable region: 407
[2025-11-21 05:02:40] 2025-11-21 10:01:50,545 | INFO     | sum of square deviations: 21843865096.092148
[2025-11-21 05:02:40] 2025-11-21 10:01:50,549 | INFO     | sum of deviations: 229084536957.06522
[2025-11-21 05:02:40] 2025-11-21 10:01:50,549 | INFO     | mean x: 1763706712.2082324
[2025-11-21 05:02:40] 2025-11-21 10:01:50,549 | INFO     | mean y: 3431824.569007264
[2025-11-21 05:02:40] 2025-11-21 10:01:50,550 | INFO     | intersect: -18493200237.426872
[2025-11-21 05:02:40] 2025-11-21 10:01:50,550 | INFO     | chi2: 4.108471791225873
[2025-11-21 05:02:40] 2025-11-21 10:01:50,550 | INFO     | current chi2=4.108471791225873 (change=37.1701596390604 %)
[2025-11-21 05:02:40] 2025-11-21 10:01:50,551 | INFO     | sum of square deviations: 21060047425.872467
[2025-11-21 05:02:40] 2025-11-21 10:01:50,554 | INFO     | sum of deviations: 196487568890.0537
[2025-11-21 05:02:40] 2025-11-21 10:01:50,554 | INFO     | mean x: 1763706864.7107842
[2025-11-21 05:02:40] 2025-11-21 10:01:50,554 | INFO     | mean y: 3438163.737745098
[2025-11-21 05:02:40] 2025-11-21 10:01:50,555 | INFO     | intersect: -16451722979.726027
[2025-11-21 05:02:40] 2025-11-21 10:01:50,555 | INFO     | chi2: 4.0554818001997095
[2025-11-21 05:02:40] 2025-11-21 10:01:50,555 | INFO     | current chi2=4.0554818001997095 (change=1.2897737581971456 %)
[2025-11-21 05:02:40] 2025-11-21 10:01:50,555 | INFO     | left removable region: 20
[2025-11-21 05:02:40] 2025-11-21 10:01:50,556 | INFO     | sum of square deviations: 17972673578.33076
[2025-11-21 05:02:40] 2025-11-21 10:01:50,559 | INFO     | sum of deviations: 358736556343.4495
[2025-11-21 05:02:40] 2025-11-21 10:01:50,559 | INFO     | mean x: 1763706834.2196383
[2025-11-21 05:02:40] 2025-11-21 10:01:50,559 | INFO     | mean y: 3493309.7829457363
[2025-11-21 05:02:40] 2025-11-21 10:01:50,559 | INFO     | intersect: -35200290554.08245
[2025-11-21 05:02:40] 2025-11-21 10:01:50,560 | INFO     | chi2: 0.06366766590443161
[2025-11-21 05:02:40] 2025-11-21 10:01:50,560 | INFO     | current memory leak: 19.96 B/s (using 387 data points, chi2=0.06)
[2025-11-21 05:02:40] 2025-11-21 10:01:50,560 | INFO     | could have reported an average CPU frequency of 2370 MHz (18 samples)
[2025-11-21 05:02:40] 2025-11-21 10:01:50,560 | INFO     | ..............................
[2025-11-21 05:02:40] 2025-11-21 10:01:50,561 | INFO     | . Timing measurements:
[2025-11-21 05:02:40] 2025-11-21 10:01:50,561 | INFO     | . get job = 0 s
[2025-11-21 05:02:40] 2025-11-21 10:01:50,561 | INFO     | . initial setup = 2 s
[2025-11-21 05:02:40] 2025-11-21 10:01:50,561 | INFO     | . payload setup = 7 s
[2025-11-21 05:02:40] 2025-11-21 10:01:50,561 | INFO     | . stage-in = 0 s
[2025-11-21 05:02:40] 2025-11-21 10:01:50,561 | INFO     | . payload execution = 25455 s
[2025-11-21 05:02:40] 2025-11-21 10:01:50,561 | INFO     | . stage-out = 3 s
[2025-11-21 05:02:40] 2025-11-21 10:01:50,561 | INFO     | . log creation = 0 s
[2025-11-21 05:02:40] 2025-11-21 10:01:50,561 | INFO     | ..............................
[2025-11-21 05:02:40] 2025-11-21 10:01:50,642 | INFO     | 
[2025-11-21 05:02:40] 2025-11-21 10:01:50,642 | INFO     | job summary report
[2025-11-21 05:02:40] 2025-11-21 10:01:50,642 | INFO     | --------------------------------------------------
[2025-11-21 05:02:40] 2025-11-21 10:01:50,642 | INFO     | PanDA job id: 6893838019
[2025-11-21 05:02:40] 2025-11-21 10:01:50,643 | INFO     | task id: 47523449
[2025-11-21 05:02:40] 2025-11-21 10:01:50,643 | INFO     | errors: (none)
[2025-11-21 05:02:40] 2025-11-21 10:01:50,643 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 05:02:40] 2025-11-21 10:01:50,643 | INFO     | pilot state: finished 
[2025-11-21 05:02:40] 2025-11-21 10:01:50,643 | INFO     | transexitcode: 0
[2025-11-21 05:02:40] 2025-11-21 10:01:50,643 | INFO     | exeerrorcode: 0
[2025-11-21 05:02:40] 2025-11-21 10:01:50,644 | INFO     | exeerrordiag: 
[2025-11-21 05:02:40] 2025-11-21 10:01:50,644 | INFO     | exitcode: 0
[2025-11-21 05:02:40] 2025-11-21 10:01:50,644 | INFO     | exitmsg: OK
[2025-11-21 05:02:40] 2025-11-21 10:01:50,644 | INFO     | cpuconsumptiontime: 292280 s
[2025-11-21 05:02:40] 2025-11-21 10:01:50,644 | INFO     | nevents: 1000
[2025-11-21 05:02:40] 2025-11-21 10:01:50,644 | INFO     | neventsw: 0
[2025-11-21 05:02:40] 2025-11-21 10:01:50,645 | INFO     | pid: 20618
[2025-11-21 05:02:40] 2025-11-21 10:01:50,645 | INFO     | pgrp: 20618
[2025-11-21 05:02:40] 2025-11-21 10:01:50,645 | INFO     | corecount: 12
[2025-11-21 05:02:40] 2025-11-21 10:01:50,645 | INFO     | event service: False
[2025-11-21 05:02:40] 2025-11-21 10:01:50,645 | INFO     | sizes: {0: 2298636, 1: 2298835, 5: 2299097, 11: 2299153, 25466: 2336278, 25467: 2336277, 25472: 2345455, 25475: 2345511, 25483: 2345757}
[2025-11-21 05:02:40] 2025-11-21 10:01:50,645 | INFO     | --------------------------------------------------
[2025-11-21 05:02:40] 2025-11-21 10:01:50,646 | INFO     | 
[2025-11-21 05:02:40] 2025-11-21 10:01:50,646 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-21 05:02:40] 2025-11-21 10:01:50,671 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 05:02:40] 2025-11-21 10:01:50,671 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 05:02:40] 2025-11-21 10:01:50,671 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 05:02:40] 2025-11-21 10:01:50,671 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 05:02:40] 2025-11-21 10:01:50,671 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 05:02:40] 2025-11-21 10:01:50,672 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 05:02:40] 2025-11-21 10:01:50,672 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 05:02:40] 2025-11-21 10:01:50,672 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 05:02:40] 2025-11-21 10:01:50,672 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 05:02:40] 2025-11-21 10:01:50,672 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 05:02:40] 2025-11-21 10:01:50,672 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 05:02:40] 2025-11-21 10:01:50,673 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 05:02:40] 2025-11-21 10:01:50,673 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 05:02:40] 2025-11-21 10:01:50,673 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 05:02:40] 2025-11-21 10:01:50,673 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 05:02:40] 2025-11-21 10:01:50,673 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 05:02:40] 2025-11-21 10:01:50,673 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 05:02:40] 2025-11-21 10:01:50,673 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 05:02:40] 2025-11-21 10:01:50,673 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 05:02:40] 2025-11-21 10:01:50,674 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 05:02:40] 2025-11-21 10:01:50,674 | INFO     | job 6893838019 has completed (purged errors)
[2025-11-21 05:02:40] 2025-11-21 10:01:50,674 | INFO     | overall cleanup function is called
[2025-11-21 05:02:40] 2025-11-21 10:01:51,689 | INFO     | --- collectZombieJob: --- 10, [20618]
[2025-11-21 05:02:40] 2025-11-21 10:01:51,689 | INFO     | zombie collector waiting for pid 20618
[2025-11-21 05:02:40] 2025-11-21 10:01:51,700 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 05:02:40] 2025-11-21 10:01:51,700 | INFO     | collected zombie processes
[2025-11-21 05:02:40] 2025-11-21 10:01:51,700 | INFO     | will attempt to kill all subprocesses of pid=20618
[2025-11-21 05:02:40] 2025-11-21 10:01:51,790 | INFO     | process IDs to be killed: [20618] (in reverse order)
[2025-11-21 05:02:40] 2025-11-21 10:01:51,844 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 05:02:40] 2025-11-21 10:01:51,844 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 05:02:40] 2025-11-21 10:01:51,847 | INFO     | did not find any defunct processes belonging to 20618
[2025-11-21 05:02:40] 2025-11-21 10:01:51,851 | INFO     | did not find any defunct processes belonging to 20618
[2025-11-21 05:02:40] 2025-11-21 10:01:51,854 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 05:02:40] 2025-11-21 10:01:51,854 | INFO     | ready for new job
[2025-11-21 05:02:40] 2025-11-21 10:01:51,854 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 05:02:40] 2025-11-21 10:01:51,856 | INFO     | ***************************************
[2025-11-21 05:02:40] 2025-11-21 10:01:51,856 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 05:02:40] 2025-11-21 10:01:51,856 | INFO     | ***************************************
[2025-11-21 05:02:40] 2025-11-21 10:01:51,856 | INFO     | 
[2025-11-21 05:02:40] 2025-11-21 10:01:51,857 | INFO     | architecture information:
[2025-11-21 05:02:40] 2025-11-21 10:01:51,858 | INFO     | executing command: cat /etc/os-release
[2025-11-21 05:02:40] 2025-11-21 10:01:51,874 | INFO     | cat /etc/os-release:
[2025-11-21 05:02:40] NAME="CentOS Linux"
[2025-11-21 05:02:40] VERSION="7 (Core)"
[2025-11-21 05:02:40] ID="centos"
[2025-11-21 05:02:40] ID_LIKE="rhel fedora"
[2025-11-21 05:02:40] VERSION_ID="7"
[2025-11-21 05:02:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 05:02:40] ANSI_COLOR="0;31"
[2025-11-21 05:02:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 05:02:40] HOME_URL="https://www.centos.org/"
[2025-11-21 05:02:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 05:02:40] 
[2025-11-21 05:02:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 05:02:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 05:02:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 05:02:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 05:02:40] 
[2025-11-21 05:02:40] 2025-11-21 10:01:51,874 | INFO     | ***************************************
[2025-11-21 05:02:40] 2025-11-21 10:01:52,377 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-21 05:02:40] 2025-11-21 10:01:52,395 | INFO     | sufficient remaining disk space (28383903744 B)
[2025-11-21 05:02:40] 2025-11-21 10:01:52,395 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 05:02:40] 2025-11-21 10:01:52,395 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 05:02:40] 2025-11-21 10:01:52,396 | INFO     | update_server=False
[2025-11-21 05:02:40] 2025-11-21 10:01:52,396 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 05:02:40] 2025-11-21 10:01:52,396 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 05:02:40] 2025-11-21 10:01:52,590 | INFO     | all data control threads have been joined
[2025-11-21 05:02:40] 2025-11-21 10:01:52,802 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 05:02:40] 2025-11-21 10:01:52,861 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 05:02:40] 2025-11-21 10:01:52,861 | INFO     | aborting loop
[2025-11-21 05:02:40] 2025-11-21 10:01:53,363 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 05:02:40] 2025-11-21 10:01:53,396 | INFO     | all job control threads have been joined
[2025-11-21 05:02:40] 2025-11-21 10:01:53,401 | INFO     | [job] retrieve thread has finished
[2025-11-21 05:02:40] 2025-11-21 10:01:53,402 | INFO     | [job] queue monitor thread has finished
[2025-11-21 05:02:40] 2025-11-21 10:01:53,532 | INFO     | [payload] validate_post thread has finished
[2025-11-21 05:02:40] 2025-11-21 10:01:53,545 | INFO     | all payload control threads have been joined
[2025-11-21 05:02:40] 2025-11-21 10:01:53,595 | INFO     | [data] control thread has finished
[2025-11-21 05:02:40] 2025-11-21 10:01:53,674 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 05:02:40] 2025-11-21 10:01:53,681 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 05:02:40] 2025-11-21 10:01:53,866 | INFO     | [job] job monitor thread has finished
[2025-11-21 05:02:40] 2025-11-21 10:01:53,996 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 05:02:40] 2025-11-21 10:01:54,130 | INFO     | [data] copytool_in thread has finished
[2025-11-21 05:02:40] 2025-11-21 10:01:54,381 | INFO     | [job] validate thread has finished
[2025-11-21 05:02:40] 2025-11-21 10:01:54,400 | INFO     | [job] control thread has finished
[2025-11-21 05:02:40] 2025-11-21 10:01:54,481 | INFO     | [payload] failed_post thread has finished
[2025-11-21 05:02:40] 2025-11-21 10:01:54,551 | INFO     | [payload] control thread has finished
[2025-11-21 05:02:40] 2025-11-21 10:01:54,808 | INFO     | [data] copytool_out thread has finished
[2025-11-21 05:02:40] 2025-11-21 10:01:54,855 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 05:02:40] 2025-11-21 10:01:57,369 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 05:02:40] 2025-11-21 10:02:22,649 | INFO     | PID=14173 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 05:02:40] 2025-11-21 10:02:22,650 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 05:02:40] 2025-11-21 10:02:22,650 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 05:02:40] 2025-11-21 10:02:22,650 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 05:02:40] 2025-11-21 10:02:33,103 | INFO     | [monitor] cgroup control has ended
[2025-11-21 05:02:40] 2025-11-21 10:02:34,995 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140211210635072)>', '<ExcThread(monitor, started 140209878464256)>']
[2025-11-21 05:02:40] 2025-11-21 10:02:35,714 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 05:02:40] 2025-11-21 10:02:35,714 | INFO     | [monitor] control thread has ended
[2025-11-21 05:02:40] 2025-11-21 10:02:40,020 | INFO     | all workflow threads have been joined
[2025-11-21 05:02:40] 2025-11-21 10:02:40,020 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 05:02:40] 2025-11-21 10:02:40,027 | INFO     | traces error code: 0
[2025-11-21 05:02:40] 2025-11-21 10:02:40,027 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 05:02:40] 2025-11-21 10:02:40,113 [wrapper] ==== pilot stdout END ====
[2025-11-21 05:02:40] 2025-11-21 10:02:40,117 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 05:02:40] 2025-11-21 10:02:40,121 [wrapper] pilotpid: 14173
[2025-11-21 05:02:40] 2025-11-21 10:02:40,124 [wrapper] Pilot exit status: 0
[2025-11-21 05:02:40] 2025-11-21 10:02:40,138 [wrapper] pandaids: 6893838019
[2025-11-21 05:02:40] 2025-11-21 10:02:40,187 [wrapper] cleanup supervisor_pilot  6116 14174
[2025-11-21 05:02:40] 2025-11-21 10:02:40,191 [wrapper] Test setup, not cleaning
[2025-11-21 05:02:40] 2025-11-21 10:02:40,195 [wrapper] apfmon messages muted
[2025-11-21 05:02:40] 2025-11-21 10:02:40,199 [wrapper] ==== wrapper stdout END ====
[2025-11-21 05:02:40] 2025-11-21 10:02:40,203 [wrapper] ==== wrapper stderr END ====
[2025-11-21 05:02:40]  *** Error codes and diagnostics ***
[2025-11-21 05:02:40]     "exeErrorCode": 0,
[2025-11-21 05:02:40]     "exeErrorDiag": "",
[2025-11-21 05:02:40]     "pilotErrorCode": 0,
[2025-11-21 05:02:40]     "pilotErrorDiag": "",
[2025-11-21 05:02:40]  *** Listing of results directory ***
[2025-11-21 05:02:40] total 1301384
[2025-11-21 05:02:40] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 05:06 pilot3.tar.gz
[2025-11-21 05:02:40] -rwx------ 1 boincer umatlas     36292 Nov 20 05:17 runpilot2-wrapper.sh
[2025-11-21 05:02:40] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 05:17 queuedata.json
[2025-11-21 05:02:40] -rw-r--r-- 1 boincer umatlas       100 Nov 20 21:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 05:02:40] -rwxr-xr-x 1 boincer umatlas      7986 Nov 20 21:56 run_atlas
[2025-11-21 05:02:40] -rw-r--r-- 1 boincer umatlas       105 Nov 20 21:56 job.xml
[2025-11-21 05:02:40] -rw-r--r-- 2 boincer umatlas 411454394 Nov 20 21:56 EVNT.47493127._000125.pool.root.1
[2025-11-21 05:02:40] -rw-r--r-- 2 boincer umatlas     15847 Nov 20 21:56 start_atlas.sh
[2025-11-21 05:02:40] drwxrwx--x 2 boincer umatlas      4096 Nov 20 21:56 shared
[2025-11-21 05:02:40] -rw-r--r-- 2 boincer umatlas    590097 Nov 20 21:56 input.tar.gz
[2025-11-21 05:02:40] -rw-r--r-- 1 boincer umatlas         0 Nov 20 21:56 boinc_lockfile
[2025-11-21 05:02:40] -rw-r--r-- 1 boincer umatlas      2786 Nov 20 21:56 pandaJob.out
[2025-11-21 05:02:40] -rw------- 1 boincer umatlas        57 Nov 20 21:56 setup.sh.local
[2025-11-21 05:02:40] -rw------- 1 boincer umatlas    989817 Nov 20 21:56 agis_schedconf.cvmfs.json
[2025-11-21 05:02:40] drwx------ 5 boincer umatlas      4096 Nov 20 21:56 pilot3
[2025-11-21 05:02:40] -rw-r--r-- 1 boincer umatlas       532 Nov 21 04:52 boinc_task_state.xml
[2025-11-21 05:02:40] -rw------- 1 boincer umatlas 905699530 Nov 21 05:01 HITS.47523449._001246.pool.root.1
[2025-11-21 05:02:40] -rw-r--r-- 1 boincer umatlas      5954 Nov 21 05:01 init_data.xml
[2025-11-21 05:02:40] -rw------- 1 boincer umatlas      1062 Nov 21 05:01 memory_monitor_summary.json
[2025-11-21 05:02:40] -rw------- 1 boincer umatlas   1526164 Nov 21 05:01 agis_ddmendpoints.agis.ALL.json
[2025-11-21 05:02:40] -rw------- 1 boincer umatlas   2189150 Nov 21 05:01 log.47523449._001246.job.log.tgz.1
[2025-11-21 05:02:40] -rw------- 1 boincer umatlas      8676 Nov 21 05:01 heartbeat.json
[2025-11-21 05:02:40] -rw------- 1 boincer umatlas        95 Nov 21 05:02 pilot_heartbeat.json
[2025-11-21 05:02:40] -rw-r--r-- 1 boincer umatlas        29 Nov 21 05:02 wrapper_checkpoint.txt
[2025-11-21 05:02:40] -rw-r--r-- 1 boincer umatlas      8192 Nov 21 05:02 boinc_mmap_file
[2025-11-21 05:02:40] -rw------- 1 boincer umatlas      4746 Nov 21 05:02 pilotlog.txt
[2025-11-21 05:02:40] -rw------- 1 boincer umatlas   3581000 Nov 21 05:02 log.47523449._001246.job.log.1
[2025-11-21 05:02:40] -rw------- 1 boincer umatlas       353 Nov 21 05:02 output.list
[2025-11-21 05:02:40] -rw-r--r-- 1 boincer umatlas       620 Nov 21 05:02 runtime_log
[2025-11-21 05:02:40] -rw------- 1 boincer umatlas   5785600 Nov 21 05:02 result.tar.gz
[2025-11-21 05:02:40] -rw-r--r-- 1 boincer umatlas      9340 Nov 21 05:02 runtime_log.err
[2025-11-21 05:02:40] -rw------- 1 boincer umatlas       669 Nov 21 05:02 JldKDmauGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGHHKDmsTZW3m.diag
[2025-11-21 05:02:40] -rw-r--r-- 1 boincer umatlas     21453 Nov 21 05:02 stderr.txt
[2025-11-21 05:02:40] HITS file was successfully produced:
[2025-11-21 05:02:40] -rw------- 1 boincer umatlas 905699530 Nov 21 05:01 shared/HITS.pool.root.1
[2025-11-21 05:02:40]  *** Contents of shared directory: ***
[2025-11-21 05:02:40] total 1292540
[2025-11-21 05:02:40] -rw-r--r-- 2 boincer umatlas 411454394 Nov 20 21:56 ATLAS.root_0
[2025-11-21 05:02:40] -rw-r--r-- 2 boincer umatlas     15847 Nov 20 21:56 start_atlas.sh
[2025-11-21 05:02:40] -rw-r--r-- 2 boincer umatlas    590097 Nov 20 21:56 input.tar.gz
[2025-11-21 05:02:40] -rw------- 1 boincer umatlas 905699530 Nov 21 05:01 HITS.pool.root.1
[2025-11-21 05:02:40] -rw------- 1 boincer umatlas   5785600 Nov 21 05:02 result.tar.gz
05:02:42 (10347): run_atlas exited; CPU time 286112.061478
05:02:42 (10347): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN