Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:29:12 (3605011): wrapper (7.7.26015): starting
02:29:12 (3605011): wrapper: running run_atlas (--nthreads 4)
[2025-11-23 02:29:12] Arguments: --nthreads 4
[2025-11-23 02:29:12] Threads: 4
[2025-11-23 02:29:12] Checking for CVMFS
[2025-11-23 02:29:12] No cvmfs_config command found, will try listing directly
[2025-11-23 02:29:12] CVMFS is ok
[2025-11-23 02:29:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 02:29:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 02:29:12] Further information can be found at the LHC@home message board.
[2025-11-23 02:29:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 02:29:12] Checking for apptainer binary...
[2025-11-23 02:29:12] which: no apptainer in ((null))
[2025-11-23 02:29:12] apptainer is not installed, using version from CVMFS
[2025-11-23 02:29:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 02:29:12] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2025-11-23 02:29:12] apptainer works
[2025-11-23 02:29:12] Set ATHENA_PROC_NUMBER=4
[2025-11-23 02:29:12] Set ATHENA_CORE_NUMBER=4
[2025-11-23 02:29:12] Starting ATLAS job with PandaID=6893874112
[2025-11-23 02:29:12] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot32/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 02:53:37]  *** The last 200 lines of the pilot log: ***
[2025-11-24 02:53:37] 2025-11-24 01:10:56,649 | INFO     | number of running child processes to parent process 3615732: 1
[2025-11-24 02:53:37] 2025-11-24 01:10:56,649 | INFO     | maximum number of monitored processes: 12
[2025-11-24 02:53:37] 2025-11-24 01:10:57,481 | INFO     | time since job start (85293s) is within the limit (172800.0s)
[2025-11-24 02:53:37] 2025-11-24 01:10:58,322 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 02:53:37] 2025-11-24 01:10:58,330 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2593.84985
[2025-11-24 02:53:37] 2025-11-24 01:10:58,338 | INFO     | using path: /scratch/boinc/var/slot32/slots/1/PanDA_Pilot-6893874112/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 02:53:37] 2025-11-24 01:10:58,339 | INFO     | extracted standard info from prmon json
[2025-11-24 02:53:37] 2025-11-24 01:10:58,339 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 02:53:37] 2025-11-24 01:10:58,339 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 02:53:37] 2025-11-24 01:10:58,365 | INFO     | fitting pss+swap vs Time
[2025-11-24 02:53:37] 2025-11-24 01:10:58,367 | INFO     | sum of square deviations: 847228204127.5505
[2025-11-24 02:53:37] 2025-11-24 01:10:58,421 | INFO     | sum of deviations: 1899462848460.076
[2025-11-24 02:53:37] 2025-11-24 01:10:58,422 | INFO     | mean x: 1763903997.6194563
[2025-11-24 02:53:37] 2025-11-24 01:10:58,422 | INFO     | mean y: 2306469.5264663803
[2025-11-24 02:53:37] 2025-11-24 01:10:58,422 | INFO     | intersect: -3952318855.038334
[2025-11-24 02:53:37] 2025-11-24 01:10:58,424 | INFO     | chi2: 3.889729838584856
[2025-11-24 02:53:37] 2025-11-24 01:10:58,426 | INFO     | sum of square deviations: 838170308484.9792
[2025-11-24 02:53:37] 2025-11-24 01:10:58,477 | INFO     | sum of deviations: 2178996848421.378
[2025-11-24 02:53:37] 2025-11-24 01:10:58,477 | INFO     | mean x: 1763903845.1198852
[2025-11-24 02:53:37] 2025-11-24 01:10:58,477 | INFO     | mean y: 2311174.368987796
[2025-11-24 02:53:37] 2025-11-24 01:10:58,477 | INFO     | intersect: -4583321221.011264
[2025-11-24 02:53:37] 2025-11-24 01:10:58,479 | INFO     | chi2: 2.011059518431947
[2025-11-24 02:53:37] 2025-11-24 01:10:58,480 | INFO     | current chi2=2.011059518431947 (change=48.298221164799415 %)
[2025-11-24 02:53:37] 2025-11-24 01:10:58,482 | INFO     | sum of square deviations: 829177204754.9061
[2025-11-24 02:53:37] 2025-11-24 01:10:58,531 | INFO     | sum of deviations: 2213020478629.1465
[2025-11-24 02:53:37] 2025-11-24 01:10:58,532 | INFO     | mean x: 1763903692.620317
[2025-11-24 02:53:37] 2025-11-24 01:10:58,532 | INFO     | mean y: 2311749.6188760805
[2025-11-24 02:53:37] 2025-11-24 01:10:58,532 | INFO     | intersect: -4705433436.468544
[2025-11-24 02:53:37] 2025-11-24 01:10:58,534 | INFO     | chi2: 1.9012124733231073
[2025-11-24 02:53:37] 2025-11-24 01:10:58,534 | INFO     | current chi2=1.9012124733231073 (change=5.462147892792809 %)
[2025-11-24 02:53:37] 2025-11-24 01:10:58,534 | INFO     | right removable region: 1387
[2025-11-24 02:53:37] 2025-11-24 01:10:58,536 | INFO     | sum of square deviations: 838170206614.9794
[2025-11-24 02:53:37] 2025-11-24 01:10:58,585 | INFO     | sum of deviations: 1649538208687.9617
[2025-11-24 02:53:37] 2025-11-24 01:10:58,586 | INFO     | mean x: 1763904150.1198852
[2025-11-24 02:53:37] 2025-11-24 01:10:58,586 | INFO     | mean y: 2310672.0122038764
[2025-11-24 02:53:37] 2025-11-24 01:10:58,586 | INFO     | intersect: -3469093189.784305
[2025-11-24 02:53:37] 2025-11-24 01:10:58,588 | INFO     | chi2: 2.1542804998698264
[2025-11-24 02:53:37] 2025-11-24 01:10:58,588 | INFO     | current chi2=2.1542804998698264 (change=44.61619214527282 %)
[2025-11-24 02:53:37] 2025-11-24 01:10:58,590 | INFO     | sum of square deviations: 829177001014.9064
[2025-11-24 02:53:37] 2025-11-24 01:10:58,639 | INFO     | sum of deviations: 1625129747932.8167
[2025-11-24 02:53:37] 2025-11-24 01:10:58,639 | INFO     | mean x: 1763904302.620317
[2025-11-24 02:53:37] 2025-11-24 01:10:58,640 | INFO     | mean y: 2311085.6448126803
[2025-11-24 02:53:37] 2025-11-24 01:10:58,640 | INFO     | intersect: -3454819721.391927
[2025-11-24 02:53:37] 2025-11-24 01:10:58,642 | INFO     | chi2: 2.1522510217592283
[2025-11-24 02:53:37] 2025-11-24 01:10:58,642 | INFO     | current chi2=2.1522510217592283 (change=0.09420677162146211 %)
[2025-11-24 02:53:37] 2025-11-24 01:10:58,642 | INFO     | left removable region: 20
[2025-11-24 02:53:37] 2025-11-24 01:10:58,644 | INFO     | sum of square deviations: 792108040822.5985
[2025-11-24 02:53:37] 2025-11-24 01:10:58,693 | INFO     | sum of deviations: 1921632635248.3784
[2025-11-24 02:53:37] 2025-11-24 01:10:58,693 | INFO     | mean x: 1763904272.1221654
[2025-11-24 02:53:37] 2025-11-24 01:10:58,693 | INFO     | mean y: 2316618.2911485005
[2025-11-24 02:53:37] 2025-11-24 01:10:58,693 | INFO     | intersect: -4276867331.4689612
[2025-11-24 02:53:37] 2025-11-24 01:10:58,695 | INFO     | chi2: 0.1473517138145211
[2025-11-24 02:53:37] 2025-11-24 01:10:58,696 | INFO     | current memory leak: 2.43 B/s (using 1367 data points, chi2=0.15)
[2025-11-24 02:53:37] 2025-11-24 01:10:58,697 | INFO     | could have reported an average CPU frequency of 2595 MHz (50 samples)
[2025-11-24 02:53:37] 2025-11-24 01:10:58,697 | INFO     | ..............................
[2025-11-24 02:53:37] 2025-11-24 01:10:58,697 | INFO     | . Timing measurements:
[2025-11-24 02:53:37] 2025-11-24 01:10:58,697 | INFO     | . get job = 0 s
[2025-11-24 02:53:37] 2025-11-24 01:10:58,698 | INFO     | . initial setup = 1 s
[2025-11-24 02:53:37] 2025-11-24 01:10:58,698 | INFO     | . payload setup = 5 s
[2025-11-24 02:53:37] 2025-11-24 01:10:58,698 | INFO     | . stage-in = 0 s
[2025-11-24 02:53:37] 2025-11-24 01:10:58,698 | INFO     | . payload execution = 85260 s
[2025-11-24 02:53:37] 2025-11-24 01:10:58,698 | INFO     | . stage-out = 2 s
[2025-11-24 02:53:37] 2025-11-24 01:10:58,698 | INFO     | . log creation = 0 s
[2025-11-24 02:53:37] 2025-11-24 01:10:58,698 | INFO     | ..............................
[2025-11-24 02:53:37] 2025-11-24 01:10:58,808 | INFO     | 
[2025-11-24 02:53:37] 2025-11-24 01:10:58,808 | INFO     | job summary report
[2025-11-24 02:53:37] 2025-11-24 01:10:58,809 | INFO     | --------------------------------------------------
[2025-11-24 02:53:37] 2025-11-24 01:10:58,809 | INFO     | PanDA job id: 6893874112
[2025-11-24 02:53:37] 2025-11-24 01:10:58,809 | INFO     | task id: 47523449
[2025-11-24 02:53:37] 2025-11-24 01:10:58,809 | INFO     | errors: (none)
[2025-11-24 02:53:37] 2025-11-24 01:10:58,809 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 02:53:37] 2025-11-24 01:10:58,809 | INFO     | pilot state: finished 
[2025-11-24 02:53:37] 2025-11-24 01:10:58,809 | INFO     | transexitcode: 0
[2025-11-24 02:53:37] 2025-11-24 01:10:58,810 | INFO     | exeerrorcode: 0
[2025-11-24 02:53:37] 2025-11-24 01:10:58,810 | INFO     | exeerrordiag: 
[2025-11-24 02:53:37] 2025-11-24 01:10:58,810 | INFO     | exitcode: 0
[2025-11-24 02:53:37] 2025-11-24 01:10:58,810 | INFO     | exitmsg: OK
[2025-11-24 02:53:37] 2025-11-24 01:10:58,810 | INFO     | cpuconsumptiontime: 328553 s
[2025-11-24 02:53:37] 2025-11-24 01:10:58,810 | INFO     | nevents: 1000
[2025-11-24 02:53:37] 2025-11-24 01:10:58,810 | INFO     | neventsw: 0
[2025-11-24 02:53:37] 2025-11-24 01:10:58,810 | INFO     | pid: 3615732
[2025-11-24 02:53:37] 2025-11-24 01:10:58,811 | INFO     | pgrp: 3615732
[2025-11-24 02:53:37] 2025-11-24 01:10:58,811 | INFO     | corecount: 4
[2025-11-24 02:53:37] 2025-11-24 01:10:58,811 | INFO     | event service: False
[2025-11-24 02:53:37] 2025-11-24 01:10:58,811 | INFO     | sizes: {0: 2298646, 1: 2298845, 5: 2299107, 12: 2299163, 85270: 2363681, 85274: 2372881, 85280: 2373071}
[2025-11-24 02:53:37] 2025-11-24 01:10:58,811 | INFO     | --------------------------------------------------
[2025-11-24 02:53:37] 2025-11-24 01:10:58,811 | INFO     | 
[2025-11-24 02:53:37] 2025-11-24 01:10:58,811 | INFO     | executing command: ls -lF /scratch/boinc/var/slot32/slots/1
[2025-11-24 02:53:37] 2025-11-24 01:10:58,831 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 02:53:37] 2025-11-24 01:10:58,831 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 02:53:37] 2025-11-24 01:10:58,832 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 02:53:37] 2025-11-24 01:10:58,832 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 02:53:37] 2025-11-24 01:10:58,832 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 02:53:37] 2025-11-24 01:10:58,832 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 02:53:37] 2025-11-24 01:10:58,832 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 02:53:37] 2025-11-24 01:10:58,832 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 02:53:37] 2025-11-24 01:10:58,832 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 02:53:37] 2025-11-24 01:10:58,833 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 02:53:37] 2025-11-24 01:10:58,833 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 02:53:37] 2025-11-24 01:10:58,833 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 02:53:37] 2025-11-24 01:10:58,833 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 02:53:37] 2025-11-24 01:10:58,833 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 02:53:37] 2025-11-24 01:10:58,833 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 02:53:37] 2025-11-24 01:10:58,833 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 02:53:37] 2025-11-24 01:10:58,833 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 02:53:37] 2025-11-24 01:10:58,834 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 02:53:37] 2025-11-24 01:10:58,834 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 02:53:37] 2025-11-24 01:10:58,834 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 02:53:37] 2025-11-24 01:10:58,834 | INFO     | job 6893874112 has completed (purged errors)
[2025-11-24 02:53:37] 2025-11-24 01:10:58,834 | INFO     | overall cleanup function is called
[2025-11-24 02:53:37] 2025-11-24 01:10:59,847 | INFO     | --- collectZombieJob: --- 10, [3615732]
[2025-11-24 02:53:37] 2025-11-24 01:10:59,847 | INFO     | zombie collector waiting for pid 3615732
[2025-11-24 02:53:37] 2025-11-24 01:10:59,847 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 02:53:37] 2025-11-24 01:10:59,847 | INFO     | collected zombie processes
[2025-11-24 02:53:37] 2025-11-24 01:10:59,847 | INFO     | will attempt to kill all subprocesses of pid=3615732
[2025-11-24 02:53:37] 2025-11-24 01:11:00,171 | INFO     | process IDs to be killed: [3615732] (in reverse order)
[2025-11-24 02:53:37] 2025-11-24 01:11:00,256 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 02:53:37] 2025-11-24 01:11:00,257 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 02:53:37] 2025-11-24 01:11:00,265 | INFO     | did not find any defunct processes belonging to 3615732
[2025-11-24 02:53:37] 2025-11-24 01:11:00,272 | INFO     | did not find any defunct processes belonging to 3615732
[2025-11-24 02:53:37] 2025-11-24 01:11:00,274 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 02:53:37] 2025-11-24 01:11:00,274 | INFO     | ready for new job
[2025-11-24 02:53:37] 2025-11-24 01:11:00,274 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 02:53:37] 2025-11-24 01:11:00,280 | INFO     | ***************************************
[2025-11-24 02:53:37] 2025-11-24 01:11:00,280 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 02:53:37] 2025-11-24 01:11:00,281 | INFO     | ***************************************
[2025-11-24 02:53:37] 2025-11-24 01:11:00,281 | INFO     | 
[2025-11-24 02:53:37] 2025-11-24 01:11:00,283 | INFO     | architecture information:
[2025-11-24 02:53:37] 2025-11-24 01:11:00,284 | INFO     | executing command: cat /etc/os-release
[2025-11-24 02:53:37] 2025-11-24 01:11:00,296 | INFO     | cat /etc/os-release:
[2025-11-24 02:53:37] NAME="CentOS Linux"
[2025-11-24 02:53:37] VERSION="7 (Core)"
[2025-11-24 02:53:37] ID="centos"
[2025-11-24 02:53:37] ID_LIKE="rhel fedora"
[2025-11-24 02:53:37] VERSION_ID="7"
[2025-11-24 02:53:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 02:53:37] ANSI_COLOR="0;31"
[2025-11-24 02:53:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 02:53:37] HOME_URL="https://www.centos.org/"
[2025-11-24 02:53:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 02:53:37] 
[2025-11-24 02:53:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 02:53:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 02:53:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 02:53:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 02:53:37] 
[2025-11-24 02:53:37] 2025-11-24 01:11:00,297 | INFO     | ***************************************
[2025-11-24 02:53:37] 2025-11-24 01:11:00,800 | INFO     | executing command: df -mP /scratch/boinc/var/slot32/slots/1
[2025-11-24 02:53:37] 2025-11-24 01:11:00,814 | INFO     | sufficient remaining disk space (1671094599680 B)
[2025-11-24 02:53:37] 2025-11-24 01:11:00,815 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 02:53:37] 2025-11-24 01:11:00,815 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 02:53:37] 2025-11-24 01:11:00,815 | INFO     | update_server=False
[2025-11-24 02:53:37] 2025-11-24 01:11:00,815 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 02:53:37] 2025-11-24 01:11:00,815 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 02:53:37] 2025-11-24 01:11:00,816 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 02:53:37] 2025-11-24 01:11:00,816 | INFO     | aborting loop
[2025-11-24 02:53:37] 2025-11-24 01:11:00,963 | INFO     | all data control threads have been joined
[2025-11-24 02:53:37] 2025-11-24 01:11:01,401 | INFO     | all payload control threads have been joined
[2025-11-24 02:53:37] 2025-11-24 01:11:01,820 | INFO     | [job] retrieve thread has finished
[2025-11-24 02:53:37] 2025-11-24 01:11:01,821 | INFO     | [job] job monitor thread has finished
[2025-11-24 02:53:37] 2025-11-24 01:11:01,959 | INFO     | [data] copytool_in thread has finished
[2025-11-24 02:53:37] 2025-11-24 01:11:01,968 | INFO     | [data] control thread has finished
[2025-11-24 02:53:37] 2025-11-24 01:11:02,176 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 02:53:37] 2025-11-24 01:11:02,295 | INFO     | [payload] failed_post thread has finished
[2025-11-24 02:53:37] 2025-11-24 01:11:02,391 | INFO     | all job control threads have been joined
[2025-11-24 02:53:37] 2025-11-24 01:11:02,407 | INFO     | [payload] control thread has finished
[2025-11-24 02:53:37] 2025-11-24 01:11:02,469 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 02:53:37] 2025-11-24 01:11:02,821 | INFO     | [data] copytool_out thread has finished
[2025-11-24 02:53:37] 2025-11-24 01:11:02,966 | INFO     | [job] validate thread has finished
[2025-11-24 02:53:37] 2025-11-24 01:11:03,206 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 02:53:37] 2025-11-24 01:11:03,215 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 02:53:37] 2025-11-24 01:11:03,285 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 02:53:37] 2025-11-24 01:11:03,348 | INFO     | [payload] validate_post thread has finished
[2025-11-24 02:53:37] 2025-11-24 01:11:03,396 | INFO     | [job] control thread has finished
[2025-11-24 02:53:37] 2025-11-24 01:11:03,817 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 02:53:37] 2025-11-24 01:11:04,821 | INFO     | [job] queue monitor thread has finished
[2025-11-24 02:53:37] 2025-11-24 01:11:07,290 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 02:53:37] 2025-11-24 01:11:30,941 | INFO     | PID=3609010 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 02:53:37] 2025-11-24 01:11:30,941 | INFO     | .. there are 3 such processes running
[2025-11-24 02:53:37] 2025-11-24 01:11:30,941 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 02:53:37] 2025-11-24 01:11:30,941 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 02:53:37] 2025-11-24 01:11:30,942 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 02:53:37] 2025-11-24 01:11:46,852 | INFO     | [monitor] cgroup control has ended
[2025-11-24 02:53:37] 2025-11-24 01:11:46,865 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22958907303744)>', '<ExcThread(monitor, started 22958590347008)>']
[2025-11-24 02:53:37] 2025-11-24 01:11:46,994 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 02:53:37] 2025-11-24 01:11:46,994 | INFO     | [monitor] control thread has ended
[2025-11-24 02:53:37] 2025-11-24 01:11:51,879 | INFO     | all workflow threads have been joined
[2025-11-24 02:53:37] 2025-11-24 01:11:51,880 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 02:53:37] 2025-11-24 01:11:51,880 | INFO     | traces error code: 0
[2025-11-24 02:53:37] 2025-11-24 01:11:51,880 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 02:53:37] 2025-11-24 01:11:52,009 [wrapper] ==== pilot stdout END ====
[2025-11-24 02:53:37] 2025-11-24 01:11:52,012 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 02:53:37] 2025-11-24 01:11:52,015 [wrapper] pilotpid: 3609010
[2025-11-24 02:53:37] 2025-11-24 01:11:52,017 [wrapper] Pilot exit status: 0
[2025-11-24 02:53:37] 2025-11-24 01:11:52,026 [wrapper] pandaids: 6893874112
[2025-11-24 02:53:37] 2025-11-24 01:11:52,081 [wrapper] cleanup supervisor_pilot  337414 3609011
[2025-11-24 02:53:37] 2025-11-24 01:11:52,084 [wrapper] Test setup, not cleaning
[2025-11-24 02:53:37] 2025-11-24 01:11:52,086 [wrapper] apfmon messages muted
[2025-11-24 02:53:37] 2025-11-24 01:11:52,089 [wrapper] ==== wrapper stdout END ====
[2025-11-24 02:53:37] 2025-11-24 01:11:52,091 [wrapper] ==== wrapper stderr END ====
[2025-11-24 02:53:37]  *** Error codes and diagnostics ***
[2025-11-24 02:53:37]     "exeErrorCode": 0,
[2025-11-24 02:53:37]     "exeErrorDiag": "",
[2025-11-24 02:53:37]     "pilotErrorCode": 0,
[2025-11-24 02:53:37]     "pilotErrorDiag": "",
[2025-11-24 02:53:37]  *** Listing of results directory ***
[2025-11-24 02:53:37] total 1340508
[2025-11-24 02:53:37] -rw-r--r-- 1 boinc boinc    576529 Nov 20 16:07 pilot3.tar.gz
[2025-11-24 02:53:37] -rwx------ 1 boinc boinc     36292 Nov 20 16:33 runpilot2-wrapper.sh
[2025-11-24 02:53:37] -rw-r--r-- 1 boinc boinc      5112 Nov 20 16:33 queuedata.json
[2025-11-24 02:53:37] -rw-r--r-- 1 boinc boinc       100 Nov 23 01:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 02:53:37] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 01:43 run_atlas
[2025-11-24 02:53:37] -rw-r--r-- 1 boinc boinc       105 Nov 23 01:43 job.xml
[2025-11-24 02:53:37] -rw-r--r-- 2 boinc boinc 410680603 Nov 23 02:29 EVNT.47493127._000700.pool.root.1
[2025-11-24 02:53:37] -rw-r--r-- 1 boinc boinc      6419 Nov 23 02:29 init_data.xml
[2025-11-24 02:53:37] drwxrwx--x 2 boinc boinc      4096 Nov 23 02:29 shared
[2025-11-24 02:53:37] -rw-r--r-- 2 boinc boinc    590102 Nov 23 02:29 input.tar.gz
[2025-11-24 02:53:37] -rw-r--r-- 2 boinc boinc     15847 Nov 23 02:29 start_atlas.sh
[2025-11-24 02:53:37] -rw-r--r-- 1 boinc boinc         0 Nov 23 02:29 boinc_lockfile
[2025-11-24 02:53:37] -rw-r--r-- 1 boinc boinc      2785 Nov 23 02:29 pandaJob.out
[2025-11-24 02:53:37] -rw------- 1 boinc boinc    989784 Nov 23 02:29 agis_schedconf.cvmfs.json
[2025-11-24 02:53:37] drwx------ 5 boinc boinc      4096 Nov 23 02:29 pilot3
[2025-11-24 02:53:37] -rw-r--r-- 1 boinc boinc       530 Nov 24 02:03 boinc_task_state.xml
[2025-11-24 02:53:37] -rw------- 1 boinc boinc 930224019 Nov 24 02:10 HITS.47523449._006996.pool.root.1
[2025-11-24 02:53:37] -rw------- 1 boinc boinc        95 Nov 24 02:10 pilot_heartbeat.json
[2025-11-24 02:53:37] -rw------- 1 boinc boinc      1044 Nov 24 02:10 memory_monitor_summary.json
[2025-11-24 02:53:37] -rw------- 1 boinc boinc   1526164 Nov 24 02:10 agis_ddmendpoints.agis.ALL.json
[2025-11-24 02:53:37] -rw------- 1 boinc boinc   2027475 Nov 24 02:10 log.47523449._006996.job.log.tgz.1
[2025-11-24 02:53:37] -rw------- 1 boinc boinc      8646 Nov 24 02:10 heartbeat.json
[2025-11-24 02:53:37] -rw------- 1 boinc boinc      4834 Nov 24 02:11 pilotlog.txt
[2025-11-24 02:53:37] -rw------- 1 boinc boinc  11900693 Nov 24 02:11 log.47523449._006996.job.log.1
[2025-11-24 02:53:37] -rw------- 1 boinc boinc       353 Nov 24 02:11 output.list
[2025-11-24 02:53:37] -rw-r--r-- 1 boinc boinc       620 Nov 24 02:11 runtime_log
[2025-11-24 02:53:37] -rw------- 1 boinc boinc  13946880 Nov 24 02:11 result.tar.gz
[2025-11-24 02:53:37] -rw-r--r-- 1 boinc boinc      9206 Nov 24 02:11 runtime_log.err
[2025-11-24 02:53:37] -rw------- 1 boinc boinc       670 Nov 24 02:11 b5sLDmlpLg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm0EIKDmPwzkSo.diag
[2025-11-24 02:53:37] -rw-r--r-- 1 boinc boinc        28 Nov 24 02:53 wrapper_checkpoint.txt
[2025-11-24 02:53:37] -rw-r--r-- 1 boinc boinc      8192 Nov 24 02:53 boinc_mmap_file
[2025-11-24 02:53:37] -rw-r--r-- 1 boinc boinc     21069 Nov 24 02:53 stderr.txt
[2025-11-24 02:53:37] HITS file was successfully produced:
[2025-11-24 02:53:37] -rw------- 1 boinc boinc 930224019 Nov 24 02:10 shared/HITS.pool.root.1
[2025-11-24 02:53:37]  *** Contents of shared directory: ***
[2025-11-24 02:53:37] total 1323704
[2025-11-24 02:53:37] -rw-r--r-- 2 boinc boinc 410680603 Nov 23 02:29 ATLAS.root_0
[2025-11-24 02:53:37] -rw-r--r-- 2 boinc boinc    590102 Nov 23 02:29 input.tar.gz
[2025-11-24 02:53:37] -rw-r--r-- 2 boinc boinc     15847 Nov 23 02:29 start_atlas.sh
[2025-11-24 02:53:37] -rw------- 1 boinc boinc 930224019 Nov 24 02:10 HITS.pool.root.1
[2025-11-24 02:53:37] -rw------- 1 boinc boinc  13946880 Nov 24 02:11 result.tar.gz
02:53:38 (3605011): run_atlas exited; CPU time 331594.171624
02:53:38 (3605011): called boinc_finish(0)

</stderr_txt>
]]>

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