Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:11:48 (1858503): wrapper (7.7.26015): starting
22:11:48 (1858503): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 22:11:48] Arguments: --nthreads 8
[2025-11-20 22:11:48] Threads: 8
[2025-11-20 22:11:48] Checking for CVMFS
[2025-11-20 22:11:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 22:11:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 22:11:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 22:11:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 22:11:49] 2.13.2.0 5895 25154 191008 153105 3 80 35285353 39288832 6305 16776704 0 14164522 99.469 15606513 36430 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 22:11:49] CVMFS is ok
[2025-11-20 22:11:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 22:11:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 22:11:49] Further information can be found at the LHC@home message board.
[2025-11-20 22:11:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 22:11:49] Checking for apptainer binary...
[2025-11-20 22:11:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 22:11:49] Running /usr/bin/apptainer --version
[2025-11-20 22:11:49] apptainer version 1.4.4-1.el9
[2025-11-20 22:11:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 22:11:50] c-210-9.aglt2.org
[2025-11-20 22:11:50] apptainer works
[2025-11-20 22:11:50] Set ATHENA_PROC_NUMBER=8
[2025-11-20 22:11:50] Set ATHENA_CORE_NUMBER=8
[2025-11-20 22:11:50] Starting ATLAS job with PandaID=6893852895
[2025-11-20 22:11:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 11:04:51]  *** The last 200 lines of the pilot log: ***
[2025-11-21 11:04:51] 2025-11-21 16:04:17,729 | INFO     | monitor loop #3229: job 0:6893852895 is in state 'finished'
[2025-11-21 11:04:51] 2025-11-21 16:04:17,730 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 11:04:51] 2025-11-21 16:04:18,006 | INFO     | time since job start (46316s) is within the limit (172800.0s)
[2025-11-21 11:04:51] 2025-11-21 16:04:18,346 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 11:04:51] 2025-11-21 16:04:18,353 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.2258000000006
[2025-11-21 11:04:51] 2025-11-21 16:04:18,360 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893852895/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 11:04:51] 2025-11-21 16:04:18,361 | INFO     | extracted standard info from prmon json
[2025-11-21 11:04:51] 2025-11-21 16:04:18,361 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 11:04:51] 2025-11-21 16:04:18,361 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 11:04:51] 2025-11-21 16:04:18,375 | INFO     | fitting pss+swap vs Time
[2025-11-21 11:04:51] 2025-11-21 16:04:18,377 | INFO     | sum of square deviations: 135040949174.41815
[2025-11-21 11:04:51] 2025-11-21 16:04:18,391 | INFO     | sum of deviations: 1172947934779.3203
[2025-11-21 11:04:51] 2025-11-21 16:04:18,392 | INFO     | mean x: 1763717904.0277045
[2025-11-21 11:04:51] 2025-11-21 16:04:18,392 | INFO     | mean y: 2905810.746701847
[2025-11-21 11:04:51] 2025-11-21 16:04:18,392 | INFO     | intersect: -15316516080.983503
[2025-11-21 11:04:51] 2025-11-21 16:04:18,393 | INFO     | chi2: 7.2637705040686145
[2025-11-21 11:04:51] 2025-11-21 16:04:18,394 | INFO     | sum of square deviations: 132386221395.5164
[2025-11-21 11:04:51] 2025-11-21 16:04:18,409 | INFO     | sum of deviations: 1433734645236.101
[2025-11-21 11:04:51] 2025-11-21 16:04:18,409 | INFO     | mean x: 1763717751.5312085
[2025-11-21 11:04:51] 2025-11-21 16:04:18,409 | INFO     | mean y: 2920798.187250996
[2025-11-21 11:04:51] 2025-11-21 16:04:18,409 | INFO     | intersect: -19098034105.82402
[2025-11-21 11:04:51] 2025-11-21 16:04:18,410 | INFO     | chi2: 4.042852301790532
[2025-11-21 11:04:51] 2025-11-21 16:04:18,410 | INFO     | current chi2=4.042852301790532 (change=44.342235213433135 %)
[2025-11-21 11:04:51] 2025-11-21 16:04:18,411 | INFO     | sum of square deviations: 129766471840.16364
[2025-11-21 11:04:51] 2025-11-21 16:04:18,425 | INFO     | sum of deviations: 1486891549696.73
[2025-11-21 11:04:51] 2025-11-21 16:04:18,426 | INFO     | mean x: 1763717599.0334225
[2025-11-21 11:04:51] 2025-11-21 16:04:18,426 | INFO     | mean y: 2923879.570855615
[2025-11-21 11:04:51] 2025-11-21 16:04:18,426 | INFO     | intersect: -20206123626.04633
[2025-11-21 11:04:51] 2025-11-21 16:04:18,427 | INFO     | chi2: 3.6658810217646978
[2025-11-21 11:04:51] 2025-11-21 16:04:18,427 | INFO     | current chi2=3.6658810217646978 (change=9.324389116537304 %)
[2025-11-21 11:04:51] 2025-11-21 16:04:18,427 | INFO     | right removable region: 747
[2025-11-21 11:04:51] 2025-11-21 16:04:18,428 | INFO     | sum of square deviations: 132385977395.5164
[2025-11-21 11:04:51] 2025-11-21 16:04:18,442 | INFO     | sum of deviations: 901265499954.9065
[2025-11-21 11:04:51] 2025-11-21 16:04:18,443 | INFO     | mean x: 1763718056.5312085
[2025-11-21 11:04:51] 2025-11-21 16:04:18,443 | INFO     | mean y: 2921407.9827357237
[2025-11-21 11:04:51] 2025-11-21 16:04:18,443 | INFO     | intersect: -12004228195.559269
[2025-11-21 11:04:51] 2025-11-21 16:04:18,444 | INFO     | chi2: 3.9912237222044347
[2025-11-21 11:04:51] 2025-11-21 16:04:18,444 | INFO     | current chi2=3.9912237222044347 (change=45.05300353351124 %)
[2025-11-21 11:04:51] 2025-11-21 16:04:18,445 | INFO     | sum of square deviations: 129766213017.35316
[2025-11-21 11:04:51] 2025-11-21 16:04:18,460 | INFO     | sum of deviations: 823539238540.0884
[2025-11-21 11:04:51] 2025-11-21 16:04:18,460 | INFO     | mean x: 1763718209.0294118
[2025-11-21 11:04:51] 2025-11-21 16:04:18,460 | INFO     | mean y: 2925924.495989305
[2025-11-21 11:04:51] 2025-11-21 16:04:18,460 | INFO     | intersect: -11190212235.967505
[2025-11-21 11:04:51] 2025-11-21 16:04:18,461 | INFO     | chi2: 3.7158574629240455
[2025-11-21 11:04:51] 2025-11-21 16:04:18,462 | INFO     | current chi2=3.7158574629240455 (change=6.899294012220862 %)
[2025-11-21 11:04:51] 2025-11-21 16:04:18,462 | INFO     | left removable region: 20
[2025-11-21 11:04:51] 2025-11-21 16:04:18,463 | INFO     | sum of square deviations: 119140810815.37549
[2025-11-21 11:04:51] 2025-11-21 16:04:18,478 | INFO     | sum of deviations: 1069756848741.8436
[2025-11-21 11:04:51] 2025-11-21 16:04:18,478 | INFO     | mean x: 1763718178.522696
[2025-11-21 11:04:51] 2025-11-21 16:04:18,479 | INFO     | mean y: 2948231.1004126547
[2025-11-21 11:04:51] 2025-11-21 16:04:18,479 | INFO     | intersect: -15833351587.682194
[2025-11-21 11:04:51] 2025-11-21 16:04:18,480 | INFO     | chi2: 0.05153943456825875
[2025-11-21 11:04:51] 2025-11-21 16:04:18,480 | INFO     | current memory leak: 8.98 B/s (using 727 data points, chi2=0.05)
[2025-11-21 11:04:51] 2025-11-21 16:04:18,481 | INFO     | could have reported an average CPU frequency of 2600 MHz (29 samples)
[2025-11-21 11:04:51] 2025-11-21 16:04:18,481 | INFO     | ..............................
[2025-11-21 11:04:51] 2025-11-21 16:04:18,481 | INFO     | . Timing measurements:
[2025-11-21 11:04:51] 2025-11-21 16:04:18,481 | INFO     | . get job = 0 s
[2025-11-21 11:04:51] 2025-11-21 16:04:18,481 | INFO     | . initial setup = 4 s
[2025-11-21 11:04:51] 2025-11-21 16:04:18,481 | INFO     | . payload setup = 19 s
[2025-11-21 11:04:51] 2025-11-21 16:04:18,482 | INFO     | . stage-in = 0 s
[2025-11-21 11:04:51] 2025-11-21 16:04:18,482 | INFO     | . payload execution = 46243 s
[2025-11-21 11:04:51] 2025-11-21 16:04:18,482 | INFO     | . stage-out = 3 s
[2025-11-21 11:04:51] 2025-11-21 16:04:18,482 | INFO     | . log creation = 0 s
[2025-11-21 11:04:51] 2025-11-21 16:04:18,482 | INFO     | ..............................
[2025-11-21 11:04:51] 2025-11-21 16:04:18,855 | INFO     | 
[2025-11-21 11:04:51] 2025-11-21 16:04:18,856 | INFO     | job summary report
[2025-11-21 11:04:51] 2025-11-21 16:04:18,856 | INFO     | --------------------------------------------------
[2025-11-21 11:04:51] 2025-11-21 16:04:18,856 | INFO     | PanDA job id: 6893852895
[2025-11-21 11:04:51] 2025-11-21 16:04:18,856 | INFO     | task id: 47523449
[2025-11-21 11:04:51] 2025-11-21 16:04:18,856 | INFO     | errors: (none)
[2025-11-21 11:04:51] 2025-11-21 16:04:18,856 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 11:04:51] 2025-11-21 16:04:18,856 | INFO     | pilot state: finished 
[2025-11-21 11:04:51] 2025-11-21 16:04:18,857 | INFO     | transexitcode: 0
[2025-11-21 11:04:51] 2025-11-21 16:04:18,857 | INFO     | exeerrorcode: 0
[2025-11-21 11:04:51] 2025-11-21 16:04:18,857 | INFO     | exeerrordiag: 
[2025-11-21 11:04:51] 2025-11-21 16:04:18,857 | INFO     | exitcode: 0
[2025-11-21 11:04:51] 2025-11-21 16:04:18,857 | INFO     | exitmsg: OK
[2025-11-21 11:04:51] 2025-11-21 16:04:18,857 | INFO     | cpuconsumptiontime: 286673 s
[2025-11-21 11:04:51] 2025-11-21 16:04:18,857 | INFO     | nevents: 1000
[2025-11-21 11:04:51] 2025-11-21 16:04:18,857 | INFO     | neventsw: 0
[2025-11-21 11:04:51] 2025-11-21 16:04:18,858 | INFO     | pid: 1868791
[2025-11-21 11:04:51] 2025-11-21 16:04:18,858 | INFO     | pgrp: 1868791
[2025-11-21 11:04:51] 2025-11-21 16:04:18,858 | INFO     | corecount: 8
[2025-11-21 11:04:51] 2025-11-21 16:04:18,858 | INFO     | event service: False
[2025-11-21 11:04:51] 2025-11-21 16:04:18,858 | INFO     | sizes: {0: 2298529, 1: 2298784, 12: 2298784, 17: 2299074, 23: 2299102, 46267: 2345367, 46270: 2354361, 46272: 2354417, 46278: 2354663}
[2025-11-21 11:04:51] 2025-11-21 16:04:18,858 | INFO     | --------------------------------------------------
[2025-11-21 11:04:51] 2025-11-21 16:04:18,858 | INFO     | 
[2025-11-21 11:04:51] 2025-11-21 16:04:18,858 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-21 11:04:51] 2025-11-21 16:04:18,889 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 11:04:51] 2025-11-21 16:04:18,889 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 11:04:51] 2025-11-21 16:04:18,890 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 11:04:51] 2025-11-21 16:04:18,890 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 11:04:51] 2025-11-21 16:04:18,890 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 11:04:51] 2025-11-21 16:04:18,890 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 11:04:51] 2025-11-21 16:04:18,890 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 11:04:51] 2025-11-21 16:04:18,890 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 11:04:51] 2025-11-21 16:04:18,890 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 11:04:51] 2025-11-21 16:04:18,890 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 11:04:51] 2025-11-21 16:04:18,891 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 11:04:51] 2025-11-21 16:04:18,891 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 11:04:51] 2025-11-21 16:04:18,891 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 11:04:51] 2025-11-21 16:04:18,891 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 11:04:51] 2025-11-21 16:04:18,891 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 11:04:51] 2025-11-21 16:04:18,891 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 11:04:51] 2025-11-21 16:04:18,891 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 11:04:51] 2025-11-21 16:04:18,891 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 11:04:51] 2025-11-21 16:04:18,891 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 11:04:51] 2025-11-21 16:04:18,892 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 11:04:51] 2025-11-21 16:04:18,892 | INFO     | job 6893852895 has completed (purged errors)
[2025-11-21 11:04:51] 2025-11-21 16:04:18,892 | INFO     | overall cleanup function is called
[2025-11-21 11:04:51] 2025-11-21 16:04:19,909 | INFO     | --- collectZombieJob: --- 10, [1868791]
[2025-11-21 11:04:51] 2025-11-21 16:04:19,910 | INFO     | zombie collector waiting for pid 1868791
[2025-11-21 11:04:51] 2025-11-21 16:04:19,910 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 11:04:51] 2025-11-21 16:04:19,910 | INFO     | collected zombie processes
[2025-11-21 11:04:51] 2025-11-21 16:04:19,910 | INFO     | will attempt to kill all subprocesses of pid=1868791
[2025-11-21 11:04:51] 2025-11-21 16:04:20,177 | INFO     | process IDs to be killed: [1868791] (in reverse order)
[2025-11-21 11:04:51] 2025-11-21 16:04:20,279 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 11:04:51] 2025-11-21 16:04:20,279 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 11:04:51] 2025-11-21 16:04:20,288 | INFO     | did not find any defunct processes belonging to 1868791
[2025-11-21 11:04:51] 2025-11-21 16:04:20,294 | INFO     | did not find any defunct processes belonging to 1868791
[2025-11-21 11:04:51] 2025-11-21 16:04:20,295 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 11:04:51] 2025-11-21 16:04:20,295 | INFO     | ready for new job
[2025-11-21 11:04:51] 2025-11-21 16:04:20,296 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 11:04:51] 2025-11-21 16:04:20,300 | INFO     | ***************************************
[2025-11-21 11:04:51] 2025-11-21 16:04:20,300 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 11:04:51] 2025-11-21 16:04:20,300 | INFO     | ***************************************
[2025-11-21 11:04:51] 2025-11-21 16:04:20,300 | INFO     | 
[2025-11-21 11:04:51] 2025-11-21 16:04:20,302 | INFO     | architecture information:
[2025-11-21 11:04:51] 2025-11-21 16:04:20,302 | INFO     | executing command: cat /etc/os-release
[2025-11-21 11:04:51] 2025-11-21 16:04:20,322 | INFO     | cat /etc/os-release:
[2025-11-21 11:04:51] NAME="CentOS Linux"
[2025-11-21 11:04:51] VERSION="7 (Core)"
[2025-11-21 11:04:51] ID="centos"
[2025-11-21 11:04:51] ID_LIKE="rhel fedora"
[2025-11-21 11:04:51] VERSION_ID="7"
[2025-11-21 11:04:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 11:04:51] ANSI_COLOR="0;31"
[2025-11-21 11:04:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 11:04:51] HOME_URL="https://www.centos.org/"
[2025-11-21 11:04:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 11:04:51] 
[2025-11-21 11:04:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 11:04:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 11:04:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 11:04:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 11:04:51] 
[2025-11-21 11:04:51] 2025-11-21 16:04:20,323 | INFO     | ***************************************
[2025-11-21 11:04:51] 2025-11-21 16:04:20,827 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-21 11:04:51] 2025-11-21 16:04:20,851 | INFO     | sufficient remaining disk space (46280998912 B)
[2025-11-21 11:04:51] 2025-11-21 16:04:20,852 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 11:04:51] 2025-11-21 16:04:20,852 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 11:04:51] 2025-11-21 16:04:20,852 | INFO     | update_server=False
[2025-11-21 11:04:51] 2025-11-21 16:04:20,852 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 11:04:51] 2025-11-21 16:04:21,150 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 11:04:51] 2025-11-21 16:04:21,238 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 11:04:51] 2025-11-21 16:04:21,241 | INFO     | aborting loop
[2025-11-21 11:04:51] 2025-11-21 16:04:21,436 | INFO     | all job control threads have been joined
[2025-11-21 11:04:51] 2025-11-21 16:04:21,858 | INFO     | [job] retrieve thread has finished
[2025-11-21 11:04:51] 2025-11-21 16:04:21,952 | INFO     | all data control threads have been joined
[2025-11-21 11:04:51] 2025-11-21 16:04:22,007 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 11:04:51] 2025-11-21 16:04:22,016 | INFO     | all payload control threads have been joined
[2025-11-21 11:04:51] 2025-11-21 16:04:22,246 | INFO     | [job] job monitor thread has finished
[2025-11-21 11:04:51] 2025-11-21 16:04:22,435 | INFO     | [payload] validate_post thread has finished
[2025-11-21 11:04:51] 2025-11-21 16:04:22,441 | INFO     | [job] control thread has finished
[2025-11-21 11:04:51] 2025-11-21 16:04:22,575 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 11:04:51] 2025-11-21 16:04:22,878 | INFO     | [job] validate thread has finished
[2025-11-21 11:04:51] 2025-11-21 16:04:22,940 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 11:04:51] 2025-11-21 16:04:22,958 | INFO     | [data] control thread has finished
[2025-11-21 11:04:51] 2025-11-21 16:04:23,000 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 11:04:51] 2025-11-21 16:04:23,003 | INFO     | [data] copytool_in thread has finished
[2025-11-21 11:04:51] 2025-11-21 16:04:23,023 | INFO     | [payload] control thread has finished
[2025-11-21 11:04:51] 2025-11-21 16:04:23,089 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 11:04:51] 2025-11-21 16:04:23,156 | INFO     | [data] copytool_out thread has finished
[2025-11-21 11:04:51] 2025-11-21 16:04:23,396 | INFO     | [payload] failed_post thread has finished
[2025-11-21 11:04:51] 2025-11-21 16:04:23,599 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 11:04:51] 2025-11-21 16:04:24,604 | INFO     | [job] queue monitor thread has finished
[2025-11-21 11:04:51] 2025-11-21 16:04:26,583 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 11:04:51] 2025-11-21 16:04:40,439 | INFO     | [monitor] cgroup control has ended
[2025-11-21 11:04:51] 2025-11-21 16:04:40,615 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140082976507712)>', '<ExcThread(monitor, started 140082463876864)>']
[2025-11-21 11:04:51] 2025-11-21 16:04:45,639 | INFO     | all workflow threads have been joined
[2025-11-21 11:04:51] 2025-11-21 16:04:45,640 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 11:04:51] 2025-11-21 16:04:45,640 | INFO     | traces error code: 0
[2025-11-21 11:04:51] 2025-11-21 16:04:45,640 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 11:04:51] 2025-11-21 16:04:51,411 | INFO     | PID=1862194 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 11:04:51] 2025-11-21 16:04:51,411 | INFO     | .. there are 7 such processes running
[2025-11-21 11:04:51] 2025-11-21 16:04:51,412 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 11:04:51] 2025-11-21 16:04:51,412 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 11:04:51] 2025-11-21 16:04:51,412 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 11:04:51] 2025-11-21 16:04:51,412 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 11:04:51] 2025-11-21 16:04:51,412 | INFO     | [monitor] control thread has ended
[2025-11-21 11:04:51] 2025-11-21 16:04:51,520 [wrapper] ==== pilot stdout END ====
[2025-11-21 11:04:51] 2025-11-21 16:04:51,524 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 11:04:51] 2025-11-21 16:04:51,527 [wrapper] pilotpid: 1862194
[2025-11-21 11:04:51] 2025-11-21 16:04:51,532 [wrapper] Pilot exit status: 0
[2025-11-21 11:04:51] 2025-11-21 16:04:51,546 [wrapper] pandaids: 6893852895
[2025-11-21 11:04:51] 2025-11-21 16:04:51,638 [wrapper] cleanup supervisor_pilot 2873969 1862195
[2025-11-21 11:04:51] 2025-11-21 16:04:51,644 [wrapper] Test setup, not cleaning
[2025-11-21 11:04:51] 2025-11-21 16:04:51,648 [wrapper] apfmon messages muted
[2025-11-21 11:04:51] 2025-11-21 16:04:51,650 [wrapper] ==== wrapper stdout END ====
[2025-11-21 11:04:51] 2025-11-21 16:04:51,654 [wrapper] ==== wrapper stderr END ====
[2025-11-21 11:04:51]  *** Error codes and diagnostics ***
[2025-11-21 11:04:51]     "exeErrorCode": 0,
[2025-11-21 11:04:51]     "exeErrorDiag": "",
[2025-11-21 11:04:51]     "pilotErrorCode": 0,
[2025-11-21 11:04:51]     "pilotErrorDiag": "",
[2025-11-21 11:04:51]  *** Listing of results directory ***
[2025-11-21 11:04:51] total 1307988
[2025-11-21 11:04:51] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 07:07 pilot3.tar.gz
[2025-11-21 11:04:51] -rwx------. 1 boincer umatlas     36292 Nov 20 07:09 runpilot2-wrapper.sh
[2025-11-21 11:04:51] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 07:09 queuedata.json
[2025-11-21 11:04:51] -rw-r--r--. 1 boincer umatlas       100 Nov 20 22:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 11:04:51] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 20 22:11 run_atlas
[2025-11-21 11:04:51] -rw-r--r--. 1 boincer umatlas       105 Nov 20 22:11 job.xml
[2025-11-21 11:04:51] -rw-r--r--. 2 boincer umatlas 410871086 Nov 20 22:11 EVNT.47493127._000406.pool.root.1
[2025-11-21 11:04:51] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 22:11 start_atlas.sh
[2025-11-21 11:04:51] drwxrwx--x. 2 boincer umatlas      4096 Nov 20 22:11 shared
[2025-11-21 11:04:51] -rw-r--r--. 2 boincer umatlas    590093 Nov 20 22:11 input.tar.gz
[2025-11-21 11:04:51] -rw-r--r--. 1 boincer umatlas         0 Nov 20 22:11 boinc_lockfile
[2025-11-21 11:04:51] -rw-r--r--. 1 boincer umatlas      2785 Nov 20 22:11 pandaJob.out
[2025-11-21 11:04:51] -rw-------. 1 boincer umatlas        57 Nov 20 22:11 setup.sh.local
[2025-11-21 11:04:51] -rw-------. 1 boincer umatlas    989817 Nov 20 22:12 agis_schedconf.cvmfs.json
[2025-11-21 11:04:51] drwx------. 5 boincer umatlas      4096 Nov 20 22:12 pilot3
[2025-11-21 11:04:51] -rw-r--r--. 1 boincer umatlas       533 Nov 21 10:54 boinc_task_state.xml
[2025-11-21 11:04:51] -rw-r--r--. 1 boincer umatlas      6662 Nov 21 11:03 init_data.xml
[2025-11-21 11:04:51] -rw-------. 1 boincer umatlas 907870136 Nov 21 11:03 HITS.47523449._004059.pool.root.1
[2025-11-21 11:04:51] -rw-------. 1 boincer umatlas      1053 Nov 21 11:04 memory_monitor_summary.json
[2025-11-21 11:04:51] -rw-------. 1 boincer umatlas   1526164 Nov 21 11:04 agis_ddmendpoints.agis.ALL.json
[2025-11-21 11:04:51] -rw-------. 1 boincer umatlas   1994998 Nov 21 11:04 log.47523449._004059.job.log.tgz.1
[2025-11-21 11:04:51] -rw-------. 1 boincer umatlas      8622 Nov 21 11:04 heartbeat.json
[2025-11-21 11:04:51] -rw-r--r--. 1 boincer umatlas        29 Nov 21 11:04 wrapper_checkpoint.txt
[2025-11-21 11:04:51] -rw-------. 1 boincer umatlas       822 Nov 21 11:04 pilotlog.txt
[2025-11-21 11:04:51] -rw-------. 1 boincer umatlas        95 Nov 21 11:04 pilot_heartbeat.json
[2025-11-21 11:04:51] -rw-------. 1 boincer umatlas   6365232 Nov 21 11:04 log.47523449._004059.job.log.1
[2025-11-21 11:04:51] -rw-------. 1 boincer umatlas       353 Nov 21 11:04 output.list
[2025-11-21 11:04:51] -rw-r--r--. 1 boincer umatlas       620 Nov 21 11:04 runtime_log
[2025-11-21 11:04:51] -rw-------. 1 boincer umatlas   8376320 Nov 21 11:04 result.tar.gz
[2025-11-21 11:04:51] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 11:04 boinc_mmap_file
[2025-11-21 11:04:51] -rw-r--r--. 1 boincer umatlas      9338 Nov 21 11:04 runtime_log.err
[2025-11-21 11:04:51] -rw-------. 1 boincer umatlas       659 Nov 21 11:04 LMKKDmieIg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmCjHKDmPfnNPo.diag
[2025-11-21 11:04:51] -rw-r--r--. 1 boincer umatlas     21355 Nov 21 11:04 stderr.txt
[2025-11-21 11:04:51] HITS file was successfully produced:
[2025-11-21 11:04:51] -rw-------. 1 boincer umatlas 907870136 Nov 21 11:03 shared/HITS.pool.root.1
[2025-11-21 11:04:51]  *** Contents of shared directory: ***
[2025-11-21 11:04:51] total 1296616
[2025-11-21 11:04:51] -rw-r--r--. 2 boincer umatlas 410871086 Nov 20 22:11 ATLAS.root_0
[2025-11-21 11:04:51] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 22:11 start_atlas.sh
[2025-11-21 11:04:51] -rw-r--r--. 2 boincer umatlas    590093 Nov 20 22:11 input.tar.gz
[2025-11-21 11:04:51] -rw-------. 1 boincer umatlas 907870136 Nov 21 11:03 HITS.pool.root.1
[2025-11-21 11:04:51] -rw-------. 1 boincer umatlas   8376320 Nov 21 11:04 result.tar.gz
11:04:53 (1858503): run_atlas exited; CPU time 286782.904656
11:04:53 (1858503): called boinc_finish(0)

</stderr_txt>
]]>

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