Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:23:10 (6827): wrapper (7.7.26015): starting
04:23:10 (6827): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 04:23:10] Arguments: --nthreads 8
[2025-11-24 04:23:10] Threads: 8
[2025-11-24 04:23:10] Checking for CVMFS
[2025-11-24 04:23:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 04:23:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 04:23:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 04:23:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 04:23:13] 2.11.2.0 25230 281792 143680 153231 0 235 24518324 25165824 4583 130560 3 122554250 99.850 85592910 3142 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 04:23:13] CVMFS is ok
[2025-11-24 04:23:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 04:23:13] Checking for apptainer binary...
[2025-11-24 04:23:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 04:23:13] Running /usr/bin/apptainer --version
[2025-11-24 04:23:13] apptainer version 1.3.2-1.el7
[2025-11-24 04:23:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 04:23:18] cg-vwn359.simple-grid.lan
[2025-11-24 04:23:18] apptainer works
[2025-11-24 04:23:18] Set ATHENA_PROC_NUMBER=8
[2025-11-24 04:23:18] Set ATHENA_CORE_NUMBER=8
[2025-11-24 04:23:18] Starting ATLAS job with PandaID=6892522878
[2025-11-24 04:23:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 01:39:11]  *** The last 200 lines of the pilot log: ***
[2025-11-25 01:39:11] 2025-11-25 00:38:02,215 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:39:11] 2025-11-25 00:38:03,084 | INFO     | time since job start (76276s) is within the limit (172800.0s)
[2025-11-25 01:39:11] 2025-11-25 00:38:04,730 | INFO     | monitor loop #5115: job 0:6892522878 is in state 'finished'
[2025-11-25 01:39:11] 2025-11-25 00:38:04,730 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:39:11] 2025-11-25 00:38:05,097 | INFO     | time since job start (76278s) is within the limit (172800.0s)
[2025-11-25 01:39:11] 2025-11-25 00:38:07,105 | INFO     | time since job start (76280s) is within the limit (172800.0s)
[2025-11-25 01:39:11] 2025-11-25 00:38:07,237 | INFO     | monitor loop #5116: job 0:6892522878 is in state 'finished'
[2025-11-25 01:39:11] 2025-11-25 00:38:07,238 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:39:11] 2025-11-25 00:38:09,113 | INFO     | time since job start (76282s) is within the limit (172800.0s)
[2025-11-25 01:39:11] 2025-11-25 00:38:09,743 | INFO     | monitor loop #5117: job 0:6892522878 is in state 'finished'
[2025-11-25 01:39:11] 2025-11-25 00:38:09,743 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:39:11] 2025-11-25 00:38:11,120 | INFO     | time since job start (76284s) is within the limit (172800.0s)
[2025-11-25 01:39:11] 2025-11-25 00:38:12,248 | INFO     | monitor loop #5118: job 0:6892522878 is in state 'finished'
[2025-11-25 01:39:11] 2025-11-25 00:38:12,248 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:39:11] 2025-11-25 00:38:13,129 | INFO     | time since job start (76286s) is within the limit (172800.0s)
[2025-11-25 01:39:11] 2025-11-25 00:38:13,678 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 01:39:11] 2025-11-25 00:38:13,679 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 01:39:11] 2025-11-25 00:38:13,681 | INFO     | using path: /var/lib/boinc/slots/14/PanDA_Pilot-6892522878/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 01:39:11] 2025-11-25 00:38:13,681 | INFO     | extracted standard info from prmon json
[2025-11-25 01:39:11] 2025-11-25 00:38:13,682 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 01:39:11] 2025-11-25 00:38:13,682 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 01:39:11] 2025-11-25 00:38:13,713 | INFO     | fitting pss+swap vs Time
[2025-11-25 01:39:11] 2025-11-25 00:38:13,720 | INFO     | sum of square deviations: 592645216308.2948
[2025-11-25 01:39:11] 2025-11-25 00:38:13,787 | INFO     | sum of deviations: 1403078382811.836
[2025-11-25 01:39:11] 2025-11-25 00:38:13,788 | INFO     | mean x: 1763993118.037067
[2025-11-25 01:39:11] 2025-11-25 00:38:13,788 | INFO     | mean y: 2855507.4601128125
[2025-11-25 01:39:11] 2025-11-25 00:38:13,788 | INFO     | intersect: -4173370914.755952
[2025-11-25 01:39:11] 2025-11-25 00:38:13,790 | INFO     | chi2: 18.50433200761963
[2025-11-25 01:39:11] 2025-11-25 00:38:13,791 | INFO     | sum of square deviations: 585511130882.8954
[2025-11-25 01:39:11] 2025-11-25 00:38:13,837 | INFO     | sum of deviations: 1811852960344.7158
[2025-11-25 01:39:11] 2025-11-25 00:38:13,837 | INFO     | mean x: 1763992965.5412621
[2025-11-25 01:39:11] 2025-11-25 00:38:13,837 | INFO     | mean y: 2864244.0153721683
[2025-11-25 01:39:11] 2025-11-25 00:38:13,837 | INFO     | intersect: -5455778142.208405
[2025-11-25 01:39:11] 2025-11-25 00:38:13,839 | INFO     | chi2: 15.255115976954043
[2025-11-25 01:39:11] 2025-11-25 00:38:13,839 | INFO     | current chi2=15.255115976954043 (change=17.55921818376173 %)
[2025-11-25 01:39:11] 2025-11-25 00:38:13,839 | INFO     | right removable region: 1235
[2025-11-25 01:39:11] 2025-11-25 00:38:13,841 | INFO     | sum of square deviations: 585510345812.8956
[2025-11-25 01:39:11] 2025-11-25 00:38:13,895 | INFO     | sum of deviations: 976178007554.3586
[2025-11-25 01:39:11] 2025-11-25 00:38:13,896 | INFO     | mean x: 1763993270.5412621
[2025-11-25 01:39:11] 2025-11-25 00:38:13,896 | INFO     | mean y: 2864627.718446602
[2025-11-25 01:39:11] 2025-11-25 00:38:13,896 | INFO     | intersect: -2938110623.172398
[2025-11-25 01:39:11] 2025-11-25 00:38:13,898 | INFO     | chi2: 15.37799363326266
[2025-11-25 01:39:11] 2025-11-25 00:38:13,898 | INFO     | current chi2=15.37799363326266 (change=16.895170131348817 %)
[2025-11-25 01:39:11] 2025-11-25 00:38:13,898 | INFO     | left removable region: 10
[2025-11-25 01:39:11] 2025-11-25 00:38:13,900 | INFO     | sum of square deviations: 570017057795.4398
[2025-11-25 01:39:11] 2025-11-25 00:38:13,942 | INFO     | sum of deviations: 1350561470074.881
[2025-11-25 01:39:11] 2025-11-25 00:38:13,943 | INFO     | mean x: 1763993240.0457144
[2025-11-25 01:39:11] 2025-11-25 00:38:13,943 | INFO     | mean y: 2878070.644897959
[2025-11-25 01:39:11] 2025-11-25 00:38:13,943 | INFO     | intersect: -4176613175.971883
[2025-11-25 01:39:11] 2025-11-25 00:38:13,944 | INFO     | chi2: 11.079072710633152
[2025-11-25 01:39:11] 2025-11-25 00:38:13,945 | INFO     | current memory leak: 2.37 B/s (using 1225 data points, chi2=11.08)
[2025-11-25 01:39:11] 2025-11-25 00:38:13,946 | INFO     | could have reported an average CPU frequency of 1999 MHz (42 samples)
[2025-11-25 01:39:11] 2025-11-25 00:38:13,947 | INFO     | ..............................
[2025-11-25 01:39:11] 2025-11-25 00:38:13,947 | INFO     | . Timing measurements:
[2025-11-25 01:39:11] 2025-11-25 00:38:13,947 | INFO     | . get job = 0 s
[2025-11-25 01:39:11] 2025-11-25 00:38:13,947 | INFO     | . initial setup = 5 s
[2025-11-25 01:39:11] 2025-11-25 00:38:13,947 | INFO     | . payload setup = 134 s
[2025-11-25 01:39:11] 2025-11-25 00:38:13,947 | INFO     | . stage-in = 0 s
[2025-11-25 01:39:11] 2025-11-25 00:38:13,947 | INFO     | . payload execution = 75843 s
[2025-11-25 01:39:11] 2025-11-25 00:38:13,947 | INFO     | . stage-out = 6 s
[2025-11-25 01:39:11] 2025-11-25 00:38:13,947 | INFO     | . log creation = 2 s
[2025-11-25 01:39:11] 2025-11-25 00:38:13,948 | INFO     | ..............................
[2025-11-25 01:39:11] 2025-11-25 00:38:14,071 | INFO     | 
[2025-11-25 01:39:11] 2025-11-25 00:38:14,072 | INFO     | job summary report
[2025-11-25 01:39:11] 2025-11-25 00:38:14,072 | INFO     | --------------------------------------------------
[2025-11-25 01:39:11] 2025-11-25 00:38:14,072 | INFO     | PanDA job id: 6892522878
[2025-11-25 01:39:11] 2025-11-25 00:38:14,072 | INFO     | task id: 47493029
[2025-11-25 01:39:11] 2025-11-25 00:38:14,072 | INFO     | errors: (none)
[2025-11-25 01:39:11] 2025-11-25 00:38:14,072 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 01:39:11] 2025-11-25 00:38:14,072 | INFO     | pilot state: finished 
[2025-11-25 01:39:11] 2025-11-25 00:38:14,072 | INFO     | transexitcode: 0
[2025-11-25 01:39:11] 2025-11-25 00:38:14,072 | INFO     | exeerrorcode: 0
[2025-11-25 01:39:11] 2025-11-25 00:38:14,073 | INFO     | exeerrordiag: 
[2025-11-25 01:39:11] 2025-11-25 00:38:14,073 | INFO     | exitcode: 0
[2025-11-25 01:39:11] 2025-11-25 00:38:14,073 | INFO     | exitmsg: OK
[2025-11-25 01:39:11] 2025-11-25 00:38:14,073 | INFO     | cpuconsumptiontime: 336287 s
[2025-11-25 01:39:11] 2025-11-25 00:38:14,073 | INFO     | nevents: 1000
[2025-11-25 01:39:11] 2025-11-25 00:38:14,073 | INFO     | neventsw: 0
[2025-11-25 01:39:11] 2025-11-25 00:38:14,073 | INFO     | pid: 17200
[2025-11-25 01:39:11] 2025-11-25 00:38:14,073 | INFO     | pgrp: 17200
[2025-11-25 01:39:11] 2025-11-25 00:38:14,073 | INFO     | corecount: 8
[2025-11-25 01:39:11] 2025-11-25 00:38:14,074 | INFO     | event service: False
[2025-11-25 01:39:11] 2025-11-25 00:38:14,074 | INFO     | sizes: {0: 2298622, 1: 2298821, 12: 2298821, 23: 2298849, 34: 2298877, 44: 2298905, 55: 2299061, 66: 2299089, 77: 2299117, 87: 2299173, 97: 2299463, 98: 2299771, 7
[2025-11-25 01:39:11] 2025-11-25 00:38:14,074 | INFO     | --------------------------------------------------
[2025-11-25 01:39:11] 2025-11-25 00:38:14,074 | INFO     | 
[2025-11-25 01:39:11] 2025-11-25 00:38:14,074 | INFO     | executing command: ls -lF /var/lib/boinc/slots/14
[2025-11-25 01:39:11] 2025-11-25 00:38:14,684 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 01:39:11] 2025-11-25 00:38:14,684 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 01:39:11] 2025-11-25 00:38:14,684 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 01:39:11] 2025-11-25 00:38:14,684 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 01:39:11] 2025-11-25 00:38:14,684 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 01:39:11] 2025-11-25 00:38:14,685 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 01:39:11] 2025-11-25 00:38:14,685 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 01:39:11] 2025-11-25 00:38:14,685 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 01:39:11] 2025-11-25 00:38:14,685 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 01:39:11] 2025-11-25 00:38:14,685 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 01:39:11] 2025-11-25 00:38:14,685 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 01:39:11] 2025-11-25 00:38:14,685 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 01:39:11] 2025-11-25 00:38:14,686 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 01:39:11] 2025-11-25 00:38:14,686 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 01:39:11] 2025-11-25 00:38:14,686 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 01:39:11] 2025-11-25 00:38:14,686 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 01:39:11] 2025-11-25 00:38:14,686 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 01:39:11] 2025-11-25 00:38:14,686 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 01:39:11] 2025-11-25 00:38:14,686 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 01:39:11] 2025-11-25 00:38:14,686 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 01:39:11] 2025-11-25 00:38:14,687 | INFO     | job 6892522878 has completed (purged errors)
[2025-11-25 01:39:11] 2025-11-25 00:38:14,687 | INFO     | overall cleanup function is called
[2025-11-25 01:39:11] 2025-11-25 00:38:15,711 | INFO     | --- collectZombieJob: --- 10, [17200]
[2025-11-25 01:39:11] 2025-11-25 00:38:15,711 | INFO     | zombie collector waiting for pid 17200
[2025-11-25 01:39:11] 2025-11-25 00:38:15,712 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 01:39:11] 2025-11-25 00:38:15,712 | INFO     | collected zombie processes
[2025-11-25 01:39:11] 2025-11-25 00:38:15,712 | INFO     | will attempt to kill all subprocesses of pid=17200
[2025-11-25 01:39:11] 2025-11-25 00:38:15,810 | INFO     | process IDs to be killed: [17200] (in reverse order)
[2025-11-25 01:39:11] 2025-11-25 00:38:16,845 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 01:39:11] 2025-11-25 00:38:16,845 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 01:39:11] 2025-11-25 00:38:16,847 | INFO     | did not find any defunct processes belonging to 17200
[2025-11-25 01:39:11] 2025-11-25 00:38:16,849 | INFO     | did not find any defunct processes belonging to 17200
[2025-11-25 01:39:11] 2025-11-25 00:38:16,909 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 01:39:11] 2025-11-25 00:38:16,910 | INFO     | ready for new job
[2025-11-25 01:39:11] 2025-11-25 00:38:16,910 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 01:39:11] 2025-11-25 00:38:16,915 | INFO     | ***************************************
[2025-11-25 01:39:11] 2025-11-25 00:38:16,915 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 01:39:11] 2025-11-25 00:38:16,915 | INFO     | ***************************************
[2025-11-25 01:39:11] 2025-11-25 00:38:16,915 | INFO     | 
[2025-11-25 01:39:11] 2025-11-25 00:38:16,916 | INFO     | pilot is running in a VM
[2025-11-25 01:39:11] 2025-11-25 00:38:16,916 | INFO     | architecture information:
[2025-11-25 01:39:11] 2025-11-25 00:38:16,924 | INFO     | executing command: cat /etc/os-release
[2025-11-25 01:39:11] 2025-11-25 00:38:17,241 | INFO     | cat /etc/os-release:
[2025-11-25 01:39:11] NAME="CentOS Linux"
[2025-11-25 01:39:11] VERSION="7 (Core)"
[2025-11-25 01:39:11] ID="centos"
[2025-11-25 01:39:11] ID_LIKE="rhel fedora"
[2025-11-25 01:39:11] VERSION_ID="7"
[2025-11-25 01:39:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 01:39:11] ANSI_COLOR="0;31"
[2025-11-25 01:39:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 01:39:11] HOME_URL="https://www.centos.org/"
[2025-11-25 01:39:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 01:39:11] 
[2025-11-25 01:39:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 01:39:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 01:39:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 01:39:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 01:39:11] 
[2025-11-25 01:39:11] 2025-11-25 00:38:17,241 | INFO     | ***************************************
[2025-11-25 01:39:11] 2025-11-25 00:38:17,744 | INFO     | executing command: df -mP /var/lib/boinc/slots/14
[2025-11-25 01:39:11] 2025-11-25 00:38:18,047 | INFO     | sufficient remaining disk space (492722716672 B)
[2025-11-25 01:39:11] 2025-11-25 00:38:18,047 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 01:39:11] 2025-11-25 00:38:18,047 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 01:39:11] 2025-11-25 00:38:18,047 | INFO     | update_server=False
[2025-11-25 01:39:11] 2025-11-25 00:38:18,048 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 01:39:11] 2025-11-25 00:38:18,271 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:39:11] 2025-11-25 00:38:18,272 | INFO     | aborting loop
[2025-11-25 01:39:11] 2025-11-25 00:38:18,439 | INFO     | all data control threads have been joined
[2025-11-25 01:39:11] 2025-11-25 00:38:18,585 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 01:39:11] 2025-11-25 00:38:19,053 | INFO     | [job] retrieve thread has finished
[2025-11-25 01:39:11] 2025-11-25 00:38:19,088 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:39:11] 2025-11-25 00:38:19,128 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 01:39:11] 2025-11-25 00:38:19,224 | INFO     | all job control threads have been joined
[2025-11-25 01:39:11] 2025-11-25 00:38:19,249 | INFO     | all payload control threads have been joined
[2025-11-25 01:39:11] 2025-11-25 00:38:19,277 | INFO     | [job] job monitor thread has finished
[2025-11-25 01:39:11] 2025-11-25 00:38:19,300 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 01:39:11] 2025-11-25 00:38:19,389 | INFO     | [data] copytool_in thread has finished
[2025-11-25 01:39:11] 2025-11-25 00:38:19,445 | INFO     | [data] control thread has finished
[2025-11-25 01:39:11] 2025-11-25 00:38:19,486 | INFO     | [payload] validate_post thread has finished
[2025-11-25 01:39:11] 2025-11-25 00:38:19,772 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 01:39:11] 2025-11-25 00:38:19,844 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 01:39:11] 2025-11-25 00:38:20,094 | INFO     | [job] queue monitor thread has finished
[2025-11-25 01:39:11] 2025-11-25 00:38:20,176 | INFO     | [payload] failed_post thread has finished
[2025-11-25 01:39:11] 2025-11-25 00:38:20,187 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 01:39:11] 2025-11-25 00:38:20,230 | INFO     | [job] control thread has finished
[2025-11-25 01:39:11] 2025-11-25 00:38:20,255 | INFO     | [payload] control thread has finished
[2025-11-25 01:39:11] 2025-11-25 00:38:20,382 | INFO     | [job] validate thread has finished
[2025-11-25 01:39:11] 2025-11-25 00:38:20,592 | INFO     | [data] copytool_out thread has finished
[2025-11-25 01:39:11] 2025-11-25 00:38:23,781 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 01:39:11] 2025-11-25 00:38:45,163 | INFO     | 76293s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-25 01:39:11] 2025-11-25 00:38:46,278 | INFO     | PID=10614 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 01:39:11] 2025-11-25 00:38:46,278 | INFO     | .. there are 2 such processes running
[2025-11-25 01:39:11] 2025-11-25 00:38:46,279 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 01:39:11] 2025-11-25 00:38:46,279 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 01:39:11] 2025-11-25 00:38:46,279 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 01:39:11] 2025-11-25 00:39:00,072 | INFO     | [monitor] cgroup control has ended
[2025-11-25 01:39:11] 2025-11-25 00:39:01,217 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140420186896192)>', '<ExcThread(monitor, started 140419442661120)>']
[2025-11-25 01:39:11] 2025-11-25 00:39:01,369 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 01:39:11] 2025-11-25 00:39:01,369 | INFO     | [monitor] control thread has ended
[2025-11-25 01:39:11] 2025-11-25 00:39:06,243 | INFO     | all workflow threads have been joined
[2025-11-25 01:39:11] 2025-11-25 00:39:06,243 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 01:39:11] 2025-11-25 00:39:06,244 | INFO     | traces error code: 0
[2025-11-25 01:39:11] 2025-11-25 00:39:06,244 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 01:39:11] 2025-11-25 00:39:06,479 [wrapper] ==== pilot stdout END ====
[2025-11-25 01:39:11] 2025-11-25 00:39:06,482 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 01:39:11] 2025-11-25 00:39:06,631 [wrapper] pilotpid: 10614
[2025-11-25 01:39:11] 2025-11-25 00:39:06,781 [wrapper] Pilot exit status: 0
[2025-11-25 01:39:11] 2025-11-25 00:39:07,193 [wrapper] pandaids: 6892522878
[2025-11-25 01:39:11] 2025-11-25 00:39:08,074 [wrapper] cleanup supervisor_pilot 25061 10615
[2025-11-25 01:39:11] 2025-11-25 00:39:08,175 [wrapper] Test setup, not cleaning
[2025-11-25 01:39:11] 2025-11-25 00:39:08,260 [wrapper] apfmon messages muted
[2025-11-25 01:39:11] 2025-11-25 00:39:08,374 [wrapper] ==== wrapper stdout END ====
[2025-11-25 01:39:11] 2025-11-25 00:39:08,488 [wrapper] ==== wrapper stderr END ====
[2025-11-25 01:39:11]  *** Error codes and diagnostics ***
[2025-11-25 01:39:11]     "exeErrorCode": 0,
[2025-11-25 01:39:11]     "exeErrorDiag": "",
[2025-11-25 01:39:11]     "pilotErrorCode": 0,
[2025-11-25 01:39:11]     "pilotErrorDiag": "",
[2025-11-25 01:39:11]  *** Listing of results directory ***
[2025-11-25 01:39:11] total 1327744
[2025-11-25 01:39:11] -rw-r--r--. 1 boinc boinc    576529 Nov 19 08:00 pilot3.tar.gz
[2025-11-25 01:39:11] -rw-r--r--. 1 boinc boinc      5112 Nov 19 08:04 queuedata.json
[2025-11-25 01:39:11] -rwx------. 1 boinc boinc     36292 Nov 19 08:06 runpilot2-wrapper.sh
[2025-11-25 01:39:11] -rw-r--r--. 1 boinc boinc       100 Nov 24 04:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 01:39:11] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 04:23 run_atlas
[2025-11-25 01:39:11] -rw-r--r--. 1 boinc boinc       105 Nov 24 04:23 job.xml
[2025-11-25 01:39:11] -rw-r--r--. 1 boinc boinc      6394 Nov 24 04:23 init_data.xml
[2025-11-25 01:39:11] -rw-r--r--. 2 boinc boinc 409681884 Nov 24 04:23 EVNT.47493027._000055.pool.root.1
[2025-11-25 01:39:11] -rw-r--r--. 2 boinc boinc     15120 Nov 24 04:23 start_atlas.sh
[2025-11-25 01:39:11] drwxrwx--x. 2 boinc boinc        68 Nov 24 04:23 shared
[2025-11-25 01:39:11] -rw-r--r--. 2 boinc boinc    590097 Nov 24 04:23 input.tar.gz
[2025-11-25 01:39:11] -rw-r--r--. 1 boinc boinc         0 Nov 24 04:23 boinc_lockfile
[2025-11-25 01:39:11] -rw-r--r--. 1 boinc boinc      2771 Nov 24 04:23 pandaJob.out
[2025-11-25 01:39:11] -rw-------. 1 boinc boinc    989786 Nov 24 04:26 agis_schedconf.cvmfs.json
[2025-11-25 01:39:11] drwx------. 5 boinc boinc      4096 Nov 24 04:26 pilot3
[2025-11-25 01:39:11] -rw-r--r--. 1 boinc boinc       533 Nov 25 01:07 boinc_task_state.xml
[2025-11-25 01:39:11] -rw-------. 1 boinc boinc 921078514 Nov 25 01:35 HITS.47493029._000503.pool.root.1
[2025-11-25 01:39:11] -rw-------. 1 boinc boinc      1032 Nov 25 01:36 memory_monitor_summary.json
[2025-11-25 01:39:11] -rw-------. 1 boinc boinc   1516227 Nov 25 01:36 agis_ddmendpoints.agis.ALL.json
[2025-11-25 01:39:11] -rw-------. 1 boinc boinc   2364839 Nov 25 01:36 log.47493029._000503.job.log.tgz.1
[2025-11-25 01:39:11] -rw-------. 1 boinc boinc        95 Nov 25 01:37 pilot_heartbeat.json
[2025-11-25 01:39:11] -rw-------. 1 boinc boinc      8634 Nov 25 01:38 heartbeat.json
[2025-11-25 01:39:11] -rw-r--r--. 1 boinc boinc        29 Nov 25 01:38 wrapper_checkpoint.txt
[2025-11-25 01:39:11] -rw-r--r--. 1 boinc boinc      8192 Nov 25 01:38 boinc_mmap_file
[2025-11-25 01:39:11] -rw-------. 1 boinc boinc      5001 Nov 25 01:39 pilotlog.txt
[2025-11-25 01:39:11] -rw-------. 1 boinc boinc  10109117 Nov 25 01:39 log.47493029._000503.job.log.1
[2025-11-25 01:39:11] -rw-------. 1 boinc boinc       353 Nov 25 01:39 output.list
[2025-11-25 01:39:11] -rw-r--r--. 1 boinc boinc       620 Nov 25 01:39 runtime_log
[2025-11-25 01:39:11] -rw-------. 1 boinc boinc  12492800 Nov 25 01:39 result.tar.gz
[2025-11-25 01:39:11] -rw-r--r--. 1 boinc boinc      8717 Nov 25 01:39 runtime_log.err
[2025-11-25 01:39:11] -rw-------. 1 boinc boinc       661 Nov 25 01:39 IqHKDm6Rrf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmxqFKDmk4lYNn.diag
[2025-11-25 01:39:11] -rw-r--r--. 1 boinc boinc     21461 Nov 25 01:39 stderr.txt
[2025-11-25 01:39:11] HITS file was successfully produced:
[2025-11-25 01:39:11] -rw-------. 1 boinc boinc 921078514 Nov 25 01:35 shared/HITS.pool.root.1
[2025-11-25 01:39:11]  *** Contents of shared directory: ***
[2025-11-25 01:39:11] total 1312368
[2025-11-25 01:39:11] -rw-r--r--. 2 boinc boinc 409681884 Nov 24 04:23 ATLAS.root_0
[2025-11-25 01:39:11] -rw-r--r--. 2 boinc boinc     15120 Nov 24 04:23 start_atlas.sh
[2025-11-25 01:39:11] -rw-r--r--. 2 boinc boinc    590097 Nov 24 04:23 input.tar.gz
[2025-11-25 01:39:11] -rw-------. 1 boinc boinc 921078514 Nov 25 01:35 HITS.pool.root.1
[2025-11-25 01:39:11] -rw-------. 1 boinc boinc  12492800 Nov 25 01:39 result.tar.gz
01:39:13 (6827): run_atlas exited; CPU time 336520.144817
01:39:13 (6827): called boinc_finish(0)

</stderr_txt>
]]>

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