Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:38:33 (592104): wrapper (7.7.26015): starting
21:38:33 (592104): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 21:38:33] Arguments: --nthreads 8
[2025-11-20 21:38:33] Threads: 8
[2025-11-20 21:38:33] Checking for CVMFS
[2025-11-20 21:38:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 21:38:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 21:38:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 21:38:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 21:38:34] 2.13.3.0 12537 22258 361680 153104 0 217 39025075 40960000 11594 16776704 43 129369794 99.735 87805580 37014 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-20 21:38:34] CVMFS is ok
[2025-11-20 21:38:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 21:38:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 21:38:34] Further information can be found at the LHC@home message board.
[2025-11-20 21:38:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 21:38:34] Checking for apptainer binary...
[2025-11-20 21:38:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 21:38:34] Running /usr/bin/apptainer --version
[2025-11-20 21:38:34] apptainer version 1.4.4-1.el9
[2025-11-20 21:38:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 21:38:34] c7-11-14.aglt2.org
[2025-11-20 21:38:34] apptainer works
[2025-11-20 21:38:34] Set ATHENA_PROC_NUMBER=8
[2025-11-20 21:38:34] Set ATHENA_CORE_NUMBER=8
[2025-11-20 21:38:34] Starting ATLAS job with PandaID=6893855181
[2025-11-20 21:38:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
01:20:11 (592104): BOINC client no longer exists - exiting
01:20:11 (592104): timer handler: client dead, exiting
01:28:59 (1761450): wrapper (7.7.26015): starting
01:28:59 (1761450): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 01:28:59] Arguments: --nthreads 8
[2025-11-21 01:28:59] Threads: 8
[2025-11-21 01:28:59] This job has been restarted, cleaning up previous attempt
[2025-11-21 01:28:59] Checking for CVMFS
[2025-11-21 01:29:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 01:29:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 01:29:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 01:29:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 01:29:00] 2.13.3.0 12537 22488 364820 153111 2 295 20528988 40960000 7310 16776704 43 130822594 99.737 88019737 37022 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-21 01:29:00] CVMFS is ok
[2025-11-21 01:29:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 01:29:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 01:29:00] Further information can be found at the LHC@home message board.
[2025-11-21 01:29:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 01:29:00] Checking for apptainer binary...
[2025-11-21 01:29:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 01:29:00] Running /usr/bin/apptainer --version
[2025-11-21 01:29:00] apptainer version 1.4.4-1.el9
[2025-11-21 01:29:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 01:29:00] c7-11-14.aglt2.org
[2025-11-21 01:29:00] apptainer works
[2025-11-21 01:29:00] Set ATHENA_PROC_NUMBER=8
[2025-11-21 01:29:00] Set ATHENA_CORE_NUMBER=8
[2025-11-21 01:29:00] Starting ATLAS job with PandaID=6893855181
[2025-11-21 01:29:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 11:31:30]  *** The last 200 lines of the pilot log: ***
[2025-11-21 11:31:30] 2025-11-21 16:30:55,220 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 11:31:30] 2025-11-21 16:30:56,273 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 11:31:30] 2025-11-21 16:30:56,291 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3291.3826406249996
[2025-11-21 11:31:30] 2025-11-21 16:30:56,306 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6893855181/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 11:31:30] 2025-11-21 16:30:56,306 | INFO     | extracted standard info from prmon json
[2025-11-21 11:31:30] 2025-11-21 16:30:56,306 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 11:31:30] 2025-11-21 16:30:56,307 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 11:31:30] 2025-11-21 16:30:56,315 | INFO     | fitting pss+swap vs Time
[2025-11-21 11:31:30] 2025-11-21 16:30:56,316 | INFO     | sum of square deviations: 64333586848.36307
[2025-11-21 11:31:30] 2025-11-21 16:30:56,322 | INFO     | sum of deviations: 592742541066.7799
[2025-11-21 11:31:30] 2025-11-21 16:30:56,323 | INFO     | mean x: 1763724606.6402028
[2025-11-21 11:31:30] 2025-11-21 16:30:56,323 | INFO     | mean y: 2876174.496621622
[2025-11-21 11:31:30] 2025-11-21 16:30:56,323 | INFO     | intersect: -16247338624.595078
[2025-11-21 11:31:30] 2025-11-21 16:30:56,323 | INFO     | chi2: 4.957364456120531
[2025-11-21 11:31:30] 2025-11-21 16:30:56,324 | INFO     | sum of square deviations: 62717427526.807915
[2025-11-21 11:31:30] 2025-11-21 16:30:56,331 | INFO     | sum of deviations: 778785532525.6906
[2025-11-21 11:31:30] 2025-11-21 16:30:56,331 | INFO     | mean x: 1763724454.1499147
[2025-11-21 11:31:30] 2025-11-21 16:30:56,331 | INFO     | mean y: 2893708.7989778533
[2025-11-21 11:31:30] 2025-11-21 16:30:56,331 | INFO     | intersect: -21897926245.37738
[2025-11-21 11:31:30] 2025-11-21 16:30:56,331 | INFO     | chi2: 1.952796014827525
[2025-11-21 11:31:30] 2025-11-21 16:30:56,332 | INFO     | current chi2=1.952796014827525 (change=60.60818138120677 %)
[2025-11-21 11:31:30] 2025-11-21 16:30:56,332 | INFO     | sum of square deviations: 61128392014.19426
[2025-11-21 11:31:30] 2025-11-21 16:30:56,339 | INFO     | sum of deviations: 774963365778.8528
[2025-11-21 11:31:30] 2025-11-21 16:30:56,339 | INFO     | mean x: 1763724301.6512027
[2025-11-21 11:31:30] 2025-11-21 16:30:56,339 | INFO     | mean y: 2893335.35395189
[2025-11-21 11:31:30] 2025-11-21 16:30:56,339 | INFO     | intersect: -22356957399.738037
[2025-11-21 11:31:30] 2025-11-21 16:30:56,340 | INFO     | chi2: 1.9120731160007383
[2025-11-21 11:31:30] 2025-11-21 16:30:56,340 | INFO     | current chi2=1.9120731160007383 (change=2.0853636794411132 %)
[2025-11-21 11:31:30] 2025-11-21 16:30:56,340 | INFO     | right removable region: 581
[2025-11-21 11:31:30] 2025-11-21 16:30:56,341 | INFO     | sum of square deviations: 62717087637.40054
[2025-11-21 11:31:30] 2025-11-21 16:30:56,347 | INFO     | sum of deviations: 455851841587.4395
[2025-11-21 11:31:30] 2025-11-21 16:30:56,347 | INFO     | mean x: 1763724759.1465077
[2025-11-21 11:31:30] 2025-11-21 16:30:56,348 | INFO     | mean y: 2889053.9948892673
[2025-11-21 11:31:30] 2025-11-21 16:30:56,348 | INFO     | intersect: -12816538789.316591
[2025-11-21 11:31:30] 2025-11-21 16:30:56,348 | INFO     | chi2: 3.1975687961404047
[2025-11-21 11:31:30] 2025-11-21 16:30:56,348 | INFO     | current chi2=3.1975687961404047 (change=35.498613740360014 %)
[2025-11-21 11:31:30] 2025-11-21 16:30:56,349 | INFO     | sum of square deviations: 61127999054.79208
[2025-11-21 11:31:30] 2025-11-21 16:30:56,356 | INFO     | sum of deviations: 418700899775.6693
[2025-11-21 11:31:30] 2025-11-21 16:30:56,356 | INFO     | mean x: 1763724911.6477664
[2025-11-21 11:31:30] 2025-11-21 16:30:56,356 | INFO     | mean y: 2892617.5154639175
[2025-11-21 11:31:30] 2025-11-21 16:30:56,357 | INFO     | intersect: -12077875915.440311
[2025-11-21 11:31:30] 2025-11-21 16:30:56,357 | INFO     | chi2: 3.151860772819375
[2025-11-21 11:31:30] 2025-11-21 16:30:56,357 | INFO     | current chi2=3.151860772819375 (change=1.4294617640815515 %)
[2025-11-21 11:31:30] 2025-11-21 16:30:56,357 | INFO     | left removable region: 20
[2025-11-21 11:31:30] 2025-11-21 16:30:56,358 | INFO     | sum of square deviations: 54747017218.2388
[2025-11-21 11:31:30] 2025-11-21 16:30:56,364 | INFO     | sum of deviations: 545029858462.7039
[2025-11-21 11:31:30] 2025-11-21 16:30:56,364 | INFO     | mean x: 1763724881.1622102
[2025-11-21 11:31:30] 2025-11-21 16:30:56,364 | INFO     | mean y: 2915555.9483065954
[2025-11-21 11:31:30] 2025-11-21 16:30:56,364 | INFO     | intersect: -17555716332.89075
[2025-11-21 11:31:30] 2025-11-21 16:30:56,365 | INFO     | chi2: 0.060948337675245136
[2025-11-21 11:31:30] 2025-11-21 16:30:56,365 | INFO     | current memory leak: 9.96 B/s (using 561 data points, chi2=0.06)
[2025-11-21 11:31:30] 2025-11-21 16:30:56,366 | INFO     | could have reported an average CPU frequency of 3288 MHz (23 samples)
[2025-11-21 11:31:30] 2025-11-21 16:30:56,366 | INFO     | ..............................
[2025-11-21 11:31:30] 2025-11-21 16:30:56,366 | INFO     | . Timing measurements:
[2025-11-21 11:31:30] 2025-11-21 16:30:56,366 | INFO     | . get job = 0 s
[2025-11-21 11:31:30] 2025-11-21 16:30:56,366 | INFO     | . initial setup = 2 s
[2025-11-21 11:31:30] 2025-11-21 16:30:56,366 | INFO     | . payload setup = 6 s
[2025-11-21 11:31:30] 2025-11-21 16:30:56,366 | INFO     | . stage-in = 0 s
[2025-11-21 11:31:30] 2025-11-21 16:30:56,366 | INFO     | . payload execution = 36060 s
[2025-11-21 11:31:30] 2025-11-21 16:30:56,366 | INFO     | . stage-out = 4 s
[2025-11-21 11:31:30] 2025-11-21 16:30:56,366 | INFO     | . log creation = 0 s
[2025-11-21 11:31:30] 2025-11-21 16:30:56,367 | INFO     | ..............................
[2025-11-21 11:31:30] 2025-11-21 16:30:56,571 | INFO     | 
[2025-11-21 11:31:30] 2025-11-21 16:30:56,572 | INFO     | job summary report
[2025-11-21 11:31:30] 2025-11-21 16:30:56,572 | INFO     | --------------------------------------------------
[2025-11-21 11:31:30] 2025-11-21 16:30:56,572 | INFO     | PanDA job id: 6893855181
[2025-11-21 11:31:30] 2025-11-21 16:30:56,572 | INFO     | task id: 47523449
[2025-11-21 11:31:30] 2025-11-21 16:30:56,572 | INFO     | errors: (none)
[2025-11-21 11:31:30] 2025-11-21 16:30:56,572 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 11:31:30] 2025-11-21 16:30:56,572 | INFO     | pilot state: finished 
[2025-11-21 11:31:30] 2025-11-21 16:30:56,572 | INFO     | transexitcode: 0
[2025-11-21 11:31:30] 2025-11-21 16:30:56,572 | INFO     | exeerrorcode: 0
[2025-11-21 11:31:30] 2025-11-21 16:30:56,572 | INFO     | exeerrordiag: 
[2025-11-21 11:31:30] 2025-11-21 16:30:56,572 | INFO     | exitcode: 0
[2025-11-21 11:31:30] 2025-11-21 16:30:56,572 | INFO     | exitmsg: OK
[2025-11-21 11:31:30] 2025-11-21 16:30:56,573 | INFO     | cpuconsumptiontime: 194650 s
[2025-11-21 11:31:30] 2025-11-21 16:30:56,573 | INFO     | nevents: 1000
[2025-11-21 11:31:30] 2025-11-21 16:30:56,573 | INFO     | neventsw: 0
[2025-11-21 11:31:30] 2025-11-21 16:30:56,573 | INFO     | pid: 1845843
[2025-11-21 11:31:30] 2025-11-21 16:30:56,573 | INFO     | pgrp: 1845843
[2025-11-21 11:31:30] 2025-11-21 16:30:56,573 | INFO     | corecount: 8
[2025-11-21 11:31:30] 2025-11-21 16:30:56,573 | INFO     | event service: False
[2025-11-21 11:31:30] 2025-11-21 16:30:56,573 | INFO     | sizes: {0: 2298635, 1: 2298834, 5: 2299096, 11: 2299152, 36070: 2341691, 36075: 2350685, 36077: 2350869, 36089: 2351115}
[2025-11-21 11:31:30] 2025-11-21 16:30:56,573 | INFO     | --------------------------------------------------
[2025-11-21 11:31:30] 2025-11-21 16:30:56,573 | INFO     | 
[2025-11-21 11:31:30] 2025-11-21 16:30:56,573 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-21 11:31:30] 2025-11-21 16:30:56,617 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 11:31:30] 2025-11-21 16:30:56,617 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 11:31:30] 2025-11-21 16:30:56,617 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 11:31:30] 2025-11-21 16:30:56,617 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 11:31:30] 2025-11-21 16:30:56,617 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 11:31:30] 2025-11-21 16:30:56,617 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 11:31:30] 2025-11-21 16:30:56,618 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 11:31:30] 2025-11-21 16:30:56,618 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 11:31:30] 2025-11-21 16:30:56,618 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 11:31:30] 2025-11-21 16:30:56,618 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 11:31:30] 2025-11-21 16:30:56,618 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 11:31:30] 2025-11-21 16:30:56,618 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 11:31:30] 2025-11-21 16:30:56,618 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 11:31:30] 2025-11-21 16:30:56,618 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 11:31:30] 2025-11-21 16:30:56,618 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 11:31:30] 2025-11-21 16:30:56,618 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 11:31:30] 2025-11-21 16:30:56,618 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 11:31:30] 2025-11-21 16:30:56,618 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 11:31:30] 2025-11-21 16:30:56,619 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 11:31:30] 2025-11-21 16:30:56,619 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 11:31:30] 2025-11-21 16:30:56,619 | INFO     | job 6893855181 has completed (purged errors)
[2025-11-21 11:31:30] 2025-11-21 16:30:56,619 | INFO     | overall cleanup function is called
[2025-11-21 11:31:30] 2025-11-21 16:30:56,895 | INFO     | PID=1792174 has CPU usage=11.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-21 11:31:30] 2025-11-21 16:30:56,896 | INFO     | .. there are 31 such processes running
[2025-11-21 11:31:30] 2025-11-21 16:30:57,676 | INFO     | --- collectZombieJob: --- 10, [1845843]
[2025-11-21 11:31:30] 2025-11-21 16:30:57,676 | INFO     | zombie collector waiting for pid 1845843
[2025-11-21 11:31:30] 2025-11-21 16:30:57,676 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 11:31:30] 2025-11-21 16:30:57,676 | INFO     | collected zombie processes
[2025-11-21 11:31:30] 2025-11-21 16:30:57,676 | INFO     | will attempt to kill all subprocesses of pid=1845843
[2025-11-21 11:31:30] 2025-11-21 16:30:58,275 | INFO     | process IDs to be killed: [1845843] (in reverse order)
[2025-11-21 11:31:30] 2025-11-21 16:30:58,433 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 11:31:30] 2025-11-21 16:30:58,433 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 11:31:30] 2025-11-21 16:30:58,454 | INFO     | did not find any defunct processes belonging to 1845843
[2025-11-21 11:31:30] 2025-11-21 16:30:58,469 | INFO     | did not find any defunct processes belonging to 1845843
[2025-11-21 11:31:30] 2025-11-21 16:30:58,470 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 11:31:30] 2025-11-21 16:30:58,471 | INFO     | ready for new job
[2025-11-21 11:31:30] 2025-11-21 16:30:58,471 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 11:31:30] 2025-11-21 16:30:58,474 | INFO     | ***************************************
[2025-11-21 11:31:30] 2025-11-21 16:30:58,476 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 11:31:30] 2025-11-21 16:30:58,476 | INFO     | ***************************************
[2025-11-21 11:31:30] 2025-11-21 16:30:58,476 | INFO     | 
[2025-11-21 11:31:30] 2025-11-21 16:30:58,479 | INFO     | architecture information:
[2025-11-21 11:31:30] 2025-11-21 16:30:58,480 | INFO     | executing command: cat /etc/os-release
[2025-11-21 11:31:30] 2025-11-21 16:30:58,501 | INFO     | cat /etc/os-release:
[2025-11-21 11:31:30] NAME="CentOS Linux"
[2025-11-21 11:31:30] VERSION="7 (Core)"
[2025-11-21 11:31:30] ID="centos"
[2025-11-21 11:31:30] ID_LIKE="rhel fedora"
[2025-11-21 11:31:30] VERSION_ID="7"
[2025-11-21 11:31:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 11:31:30] ANSI_COLOR="0;31"
[2025-11-21 11:31:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 11:31:30] HOME_URL="https://www.centos.org/"
[2025-11-21 11:31:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 11:31:30] 
[2025-11-21 11:31:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 11:31:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 11:31:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 11:31:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 11:31:30] 
[2025-11-21 11:31:30] 2025-11-21 16:30:58,501 | INFO     | ***************************************
[2025-11-21 11:31:30] 2025-11-21 16:30:59,004 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-21 11:31:30] 2025-11-21 16:30:59,019 | INFO     | sufficient remaining disk space (76054265856 B)
[2025-11-21 11:31:30] 2025-11-21 16:30:59,019 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 11:31:30] 2025-11-21 16:30:59,019 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 11:31:30] 2025-11-21 16:30:59,019 | INFO     | update_server=False
[2025-11-21 11:31:30] 2025-11-21 16:30:59,019 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 11:31:30] 2025-11-21 16:30:59,020 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 11:31:30] 2025-11-21 16:30:59,020 | INFO     | aborting loop
[2025-11-21 11:31:30] 2025-11-21 16:30:59,022 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 11:31:30] 2025-11-21 16:30:59,343 | INFO     | all data control threads have been joined
[2025-11-21 11:31:30] 2025-11-21 16:31:00,001 | INFO     | all job control threads have been joined
[2025-11-21 11:31:30] 2025-11-21 16:31:00,024 | INFO     | [job] retrieve thread has finished
[2025-11-21 11:31:30] 2025-11-21 16:31:00,026 | INFO     | [job] job monitor thread has finished
[2025-11-21 11:31:30] 2025-11-21 16:31:00,094 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 11:31:30] 2025-11-21 16:31:00,122 | INFO     | all payload control threads have been joined
[2025-11-21 11:31:30] 2025-11-21 16:31:00,192 | INFO     | [payload] validate_post thread has finished
[2025-11-21 11:31:30] 2025-11-21 16:31:00,232 | INFO     | [job] validate thread has finished
[2025-11-21 11:31:30] 2025-11-21 16:31:00,235 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 11:31:30] 2025-11-21 16:31:00,348 | INFO     | [data] control thread has finished
[2025-11-21 11:31:30] 2025-11-21 16:31:00,404 | INFO     | [data] copytool_in thread has finished
[2025-11-21 11:31:30] 2025-11-21 16:31:00,491 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 11:31:30] 2025-11-21 16:31:00,573 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 11:31:30] 2025-11-21 16:31:00,828 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 11:31:30] 2025-11-21 16:31:01,006 | INFO     | [job] control thread has finished
[2025-11-21 11:31:30] 2025-11-21 16:31:01,029 | INFO     | [data] copytool_out thread has finished
[2025-11-21 11:31:30] 2025-11-21 16:31:01,087 | INFO     | [payload] failed_post thread has finished
[2025-11-21 11:31:30] 2025-11-21 16:31:01,128 | INFO     | [payload] control thread has finished
[2025-11-21 11:31:30] 2025-11-21 16:31:01,586 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 11:31:30] 2025-11-21 16:31:02,592 | INFO     | [job] queue monitor thread has finished
[2025-11-21 11:31:30] 2025-11-21 16:31:04,105 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 11:31:30] 2025-11-21 16:31:13,429 | INFO     | [monitor] cgroup control has ended
[2025-11-21 11:31:30] 2025-11-21 16:31:14,488 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140376981038912)>', '<ExcThread(monitor, started 140376484595456)>']
[2025-11-21 11:31:30] 2025-11-21 16:31:19,521 | INFO     | all workflow threads have been joined
[2025-11-21 11:31:30] 2025-11-21 16:31:19,521 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 11:31:30] 2025-11-21 16:31:19,521 | INFO     | traces error code: 0
[2025-11-21 11:31:30] 2025-11-21 16:31:19,522 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 11:31:30] 2025-11-21 16:31:29,581 | INFO     | PID=1792174 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 11:31:30] 2025-11-21 16:31:29,581 | INFO     | .. there are 31 such processes running
[2025-11-21 11:31:30] 2025-11-21 16:31:29,582 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 11:31:30] 2025-11-21 16:31:29,582 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 11:31:30] 2025-11-21 16:31:29,582 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 11:31:30] 2025-11-21 16:31:29,582 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 11:31:30] 2025-11-21 16:31:29,582 | INFO     | [monitor] control thread has ended
[2025-11-21 11:31:30] 2025-11-21 16:31:29,801 [wrapper] ==== pilot stdout END ====
[2025-11-21 11:31:30] 2025-11-21 16:31:29,810 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 11:31:30] 2025-11-21 16:31:29,814 [wrapper] pilotpid: 1792174
[2025-11-21 11:31:30] 2025-11-21 16:31:29,818 [wrapper] Pilot exit status: 0
[2025-11-21 11:31:30] 2025-11-21 16:31:29,829 [wrapper] pandaids: 6893855181 6893855181
[2025-11-21 11:31:30] 2025-11-21 16:31:29,922 [wrapper] cleanup supervisor_pilot  512410 1792175
[2025-11-21 11:31:30] 2025-11-21 16:31:29,927 [wrapper] Test setup, not cleaning
[2025-11-21 11:31:30] 2025-11-21 16:31:29,934 [wrapper] apfmon messages muted
[2025-11-21 11:31:30] 2025-11-21 16:31:29,941 [wrapper] ==== wrapper stdout END ====
[2025-11-21 11:31:30] 2025-11-21 16:31:29,947 [wrapper] ==== wrapper stderr END ====
[2025-11-21 11:31:30]  *** Error codes and diagnostics ***
[2025-11-21 11:31:30]     "exeErrorCode": 0,
[2025-11-21 11:31:30]     "exeErrorDiag": "",
[2025-11-21 11:31:30]     "pilotErrorCode": 0,
[2025-11-21 11:31:30]     "pilotErrorDiag": "",
[2025-11-21 11:31:30]  *** Listing of results directory ***
[2025-11-21 11:31:30] total 1716280
[2025-11-21 11:31:30] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-21 11:31:30] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 07:07 pilot3.tar.gz
[2025-11-21 11:31:30] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 07:29 queuedata.json
[2025-11-21 11:31:30] -rwx------. 1 boincer umatlas     36292 Nov 20 07:31 runpilot2-wrapper.sh
[2025-11-21 11:31:30] -rw-r--r--. 1 boincer umatlas       100 Nov 20 21:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 11:31:30] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 20 21:38 run_atlas
[2025-11-21 11:31:30] -rw-r--r--. 1 boincer umatlas       105 Nov 20 21:38 job.xml
[2025-11-21 11:31:30] -rw-r--r--. 3 boincer umatlas 409761289 Nov 20 21:38 EVNT.47493127._000437.pool.root.1
[2025-11-21 11:31:30] -rw-r--r--. 3 boincer umatlas 409761289 Nov 20 21:38 ATLAS.root_0
[2025-11-21 11:31:30] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 21:38 start_atlas.sh
[2025-11-21 11:31:30] drwxrwx--x. 2 boincer umatlas      4096 Nov 20 21:38 shared
[2025-11-21 11:31:30] -rw-r--r--. 2 boincer umatlas    590105 Nov 20 21:38 input.tar.gz
[2025-11-21 11:31:30] -rw-r--r--. 1 boincer umatlas         0 Nov 20 21:38 boinc_lockfile
[2025-11-21 11:31:30] -rw-r--r--. 1 boincer umatlas      2785 Nov 21 01:29 pandaJob.out
[2025-11-21 11:31:30] -rw-------. 1 boincer umatlas        57 Nov 21 01:29 setup.sh.local
[2025-11-21 11:31:30] -rw-------. 1 boincer umatlas    989817 Nov 21 01:29 agis_schedconf.cvmfs.json
[2025-11-21 11:31:30] -rw-r--r--. 1 boincer umatlas       533 Nov 21 11:25 boinc_task_state.xml
[2025-11-21 11:31:30] -rw-r--r--. 1 boincer umatlas      6904 Nov 21 11:29 init_data.xml
[2025-11-21 11:31:30] -rw-------. 1 boincer umatlas 920706051 Nov 21 11:30 HITS.47523449._004364.pool.root.1
[2025-11-21 11:31:30] -rw-------. 1 boincer umatlas      1040 Nov 21 11:30 memory_monitor_summary.json
[2025-11-21 11:31:30] -rw-------. 1 boincer umatlas   1526164 Nov 21 11:30 agis_ddmendpoints.agis.ALL.json
[2025-11-21 11:31:30] -rw-------. 1 boincer umatlas   1857356 Nov 21 11:30 log.47523449._004364.job.log.tgz.1
[2025-11-21 11:31:30] -rw-------. 1 boincer umatlas      8582 Nov 21 11:30 heartbeat.json
[2025-11-21 11:31:30] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 11:31 boinc_mmap_file
[2025-11-21 11:31:30] -rw-r--r--. 1 boincer umatlas        29 Nov 21 11:31 wrapper_checkpoint.txt
[2025-11-21 11:31:30] -rw-------. 1 boincer umatlas       823 Nov 21 11:31 pilotlog.txt
[2025-11-21 11:31:30] -rw-------. 1 boincer umatlas        96 Nov 21 11:31 pilot_heartbeat.json
[2025-11-21 11:31:30] -rw-------. 1 boincer umatlas   4798304 Nov 21 11:31 log.47523449._004364.job.log.1
[2025-11-21 11:31:30] -rw-------. 1 boincer umatlas       353 Nov 21 11:31 output.list
[2025-11-21 11:31:30] -rw-r--r--. 1 boincer umatlas       620 Nov 21 11:31 runtime_log
[2025-11-21 11:31:30] -rw-------. 1 boincer umatlas   6676480 Nov 21 11:31 result.tar.gz
[2025-11-21 11:31:30] -rw-r--r--. 1 boincer umatlas      9428 Nov 21 11:31 runtime_log.err
[2025-11-21 11:31:30] -rw-------. 1 boincer umatlas       785 Nov 21 11:31 C3wKDmU0Ig8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmwnHKDmrCbLBo.diag
[2025-11-21 11:31:30] -rw-r--r--. 1 boincer umatlas     23703 Nov 21 11:31 stderr.txt
[2025-11-21 11:31:30] HITS file was successfully produced:
[2025-11-21 11:31:30] -rw-------. 1 boincer umatlas 920706051 Nov 21 11:30 shared/HITS.pool.root.1
[2025-11-21 11:31:30]  *** Contents of shared directory: ***
[2025-11-21 11:31:30] total 1306412
[2025-11-21 11:31:30] -rw-r--r--. 3 boincer umatlas 409761289 Nov 20 21:38 ATLAS.root_0
[2025-11-21 11:31:30] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 21:38 start_atlas.sh
[2025-11-21 11:31:30] -rw-r--r--. 2 boincer umatlas    590105 Nov 20 21:38 input.tar.gz
[2025-11-21 11:31:30] -rw-------. 1 boincer umatlas 920706051 Nov 21 11:30 HITS.pool.root.1
[2025-11-21 11:31:30] -rw-------. 1 boincer umatlas   6676480 Nov 21 11:31 result.tar.gz
11:31:31 (1761450): run_atlas exited; CPU time 194731.022336
11:31:31 (1761450): called boinc_finish(0)

</stderr_txt>
]]>

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