Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:06:58 (1089844): wrapper (7.7.26015): starting
05:06:58 (1089844): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 05:06:58] Arguments: --nthreads 4
[2025-11-21 05:06:58] Threads: 4
[2025-11-21 05:06:58] Checking for CVMFS
[2025-11-21 05:06:58] No cvmfs_config command found, will try listing directly
[2025-11-21 05:06:58] CVMFS is ok
[2025-11-21 05:06:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 05:06:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 05:06:58] Further information can be found at the LHC@home message board.
[2025-11-21 05:06:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 05:06:58] Checking for apptainer binary...
[2025-11-21 05:06:58] which: no apptainer in ((null))
[2025-11-21 05:06:58] apptainer is not installed, using version from CVMFS
[2025-11-21 05:06:58] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 05:06:58] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot128/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-11-21 05:06:58] apptainer works
[2025-11-21 05:06:58] Set ATHENA_PROC_NUMBER=4
[2025-11-21 05:06:58] Set ATHENA_CORE_NUMBER=4
[2025-11-21 05:06:58] Starting ATLAS job with PandaID=6893872777
[2025-11-21 05:06:58] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot128/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 21:23:17]  *** The last 200 lines of the pilot log: ***
[2025-11-21 21:23:17] 2025-11-21 20:19:01,913 | INFO     | time since job start (58309s) is within the limit (172800.0s)
[2025-11-21 21:23:17] 2025-11-21 20:19:02,349 | INFO     | monitor loop #3913: job 0:6893872777 is in state 'finished'
[2025-11-21 21:23:17] 2025-11-21 20:19:02,349 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 21:23:17] 2025-11-21 20:19:03,184 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 21:23:17] 2025-11-21 20:19:03,206 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2682.8232421874995
[2025-11-21 21:23:17] 2025-11-21 20:19:03,231 | INFO     | using path: /scratch/boinc/var/slot128/slots/0/PanDA_Pilot-6893872777/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 21:23:17] 2025-11-21 20:19:03,232 | INFO     | extracted standard info from prmon json
[2025-11-21 21:23:17] 2025-11-21 20:19:03,232 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 21:23:17] 2025-11-21 20:19:03,233 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 21:23:17] 2025-11-21 20:19:03,247 | INFO     | fitting pss+swap vs Time
[2025-11-21 21:23:17] 2025-11-21 20:19:03,248 | INFO     | sum of square deviations: 270926707850.8736
[2025-11-21 21:23:17] 2025-11-21 20:19:03,270 | INFO     | sum of deviations: 731030073126.0818
[2025-11-21 21:23:17] 2025-11-21 20:19:03,270 | INFO     | mean x: 1763727194.5115063
[2025-11-21 21:23:17] 2025-11-21 20:19:03,271 | INFO     | mean y: 2274659.492677824
[2025-11-21 21:23:17] 2025-11-21 20:19:03,271 | INFO     | intersect: -4756715807.729538
[2025-11-21 21:23:17] 2025-11-21 20:19:03,272 | INFO     | chi2: 4.119867597259256
[2025-11-21 21:23:17] 2025-11-21 20:19:03,273 | INFO     | sum of square deviations: 266697962150.87274
[2025-11-21 21:23:17] 2025-11-21 20:19:03,291 | INFO     | sum of deviations: 930027223248.2491
[2025-11-21 21:23:17] 2025-11-21 20:19:03,291 | INFO     | mean x: 1763727042.0115669
[2025-11-21 21:23:17] 2025-11-21 20:19:03,291 | INFO     | mean y: 2281828.8864353313
[2025-11-21 21:23:17] 2025-11-21 20:19:03,291 | INFO     | intersect: -6148174478.394718
[2025-11-21 21:23:17] 2025-11-21 20:19:03,292 | INFO     | chi2: 1.9016039054916842
[2025-11-21 21:23:17] 2025-11-21 20:19:03,292 | INFO     | current chi2=1.9016039054916842 (change=53.84308207485292 %)
[2025-11-21 21:23:17] 2025-11-21 20:19:03,294 | INFO     | sum of square deviations: 262513449838.37207
[2025-11-21 21:23:17] 2025-11-21 20:19:03,315 | INFO     | sum of deviations: 925151722619.767
[2025-11-21 21:23:17] 2025-11-21 20:19:03,315 | INFO     | mean x: 1763726889.511628
[2025-11-21 21:23:17] 2025-11-21 20:19:03,315 | INFO     | mean y: 2281650.3847780125
[2025-11-21 21:23:17] 2025-11-21 20:19:03,315 | INFO     | intersect: -6213456899.648079
[2025-11-21 21:23:17] 2025-11-21 20:19:03,316 | INFO     | chi2: 1.8933380621623792
[2025-11-21 21:23:17] 2025-11-21 20:19:03,316 | INFO     | current chi2=1.8933380621623792 (change=0.43467744809704634 %)
[2025-11-21 21:23:17] 2025-11-21 20:19:03,316 | INFO     | right removable region: 945
[2025-11-21 21:23:17] 2025-11-21 20:19:03,317 | INFO     | sum of square deviations: 266697955440.87274
[2025-11-21 21:23:17] 2025-11-21 20:19:03,337 | INFO     | sum of deviations: 561441986642.4513
[2025-11-21 21:23:17] 2025-11-21 20:19:03,338 | INFO     | mean x: 1763727347.0115669
[2025-11-21 21:23:17] 2025-11-21 20:19:03,338 | INFO     | mean y: 2280763.958990536
[2025-11-21 21:23:17] 2025-11-21 20:19:03,338 | INFO     | intersect: -3710648283.3029766
[2025-11-21 21:23:17] 2025-11-21 20:19:03,339 | INFO     | chi2: 2.3375728983169686
[2025-11-21 21:23:17] 2025-11-21 20:19:03,339 | INFO     | current chi2=2.3375728983169686 (change=43.2609703313757 %)
[2025-11-21 21:23:17] 2025-11-21 20:19:03,340 | INFO     | sum of square deviations: 262513436418.37207
[2025-11-21 21:23:17] 2025-11-21 20:19:03,360 | INFO     | sum of deviations: 548558013402.6742
[2025-11-21 21:23:17] 2025-11-21 20:19:03,360 | INFO     | mean x: 1763727499.511628
[2025-11-21 21:23:17] 2025-11-21 20:19:03,360 | INFO     | mean y: 2281232.8932346725
[2025-11-21 21:23:17] 2025-11-21 20:19:03,360 | INFO     | intersect: -3683270510.7281194
[2025-11-21 21:23:17] 2025-11-21 20:19:03,361 | INFO     | chi2: 2.3357324741334415
[2025-11-21 21:23:17] 2025-11-21 20:19:03,361 | INFO     | current chi2=2.3357324741334415 (change=0.0787322690493256 %)
[2025-11-21 21:23:17] 2025-11-21 20:19:03,361 | INFO     | left removable region: 20
[2025-11-21 21:23:17] 2025-11-21 20:19:03,362 | INFO     | sum of square deviations: 245416251406.86942
[2025-11-21 21:23:17] 2025-11-21 20:19:03,381 | INFO     | sum of deviations: 724443845934.1998
[2025-11-21 21:23:17] 2025-11-21 20:19:03,382 | INFO     | mean x: 1763727469.0118918
[2025-11-21 21:23:17] 2025-11-21 20:19:03,382 | INFO     | mean y: 2288922.8
[2025-11-21 21:23:17] 2025-11-21 20:19:03,382 | INFO     | intersect: -5204055414.651658
[2025-11-21 21:23:17] 2025-11-21 20:19:03,383 | INFO     | chi2: 0.08662533937753733
[2025-11-21 21:23:17] 2025-11-21 20:19:03,383 | INFO     | current memory leak: 2.95 B/s (using 925 data points, chi2=0.09)
[2025-11-21 21:23:17] 2025-11-21 20:19:03,384 | INFO     | could have reported an average CPU frequency of 2683 MHz (36 samples)
[2025-11-21 21:23:17] 2025-11-21 20:19:03,384 | INFO     | ..............................
[2025-11-21 21:23:17] 2025-11-21 20:19:03,385 | INFO     | . Timing measurements:
[2025-11-21 21:23:17] 2025-11-21 20:19:03,385 | INFO     | . get job = 0 s
[2025-11-21 21:23:17] 2025-11-21 20:19:03,385 | INFO     | . initial setup = 1 s
[2025-11-21 21:23:17] 2025-11-21 20:19:03,385 | INFO     | . payload setup = 9 s
[2025-11-21 21:23:17] 2025-11-21 20:19:03,385 | INFO     | . stage-in = 0 s
[2025-11-21 21:23:17] 2025-11-21 20:19:03,385 | INFO     | . payload execution = 58267 s
[2025-11-21 21:23:17] 2025-11-21 20:19:03,385 | INFO     | . stage-out = 2 s
[2025-11-21 21:23:17] 2025-11-21 20:19:03,385 | INFO     | . log creation = 0 s
[2025-11-21 21:23:17] 2025-11-21 20:19:03,385 | INFO     | ..............................
[2025-11-21 21:23:17] 2025-11-21 20:19:03,473 | INFO     | 
[2025-11-21 21:23:17] 2025-11-21 20:19:03,473 | INFO     | job summary report
[2025-11-21 21:23:17] 2025-11-21 20:19:03,473 | INFO     | --------------------------------------------------
[2025-11-21 21:23:17] 2025-11-21 20:19:03,473 | INFO     | PanDA job id: 6893872777
[2025-11-21 21:23:17] 2025-11-21 20:19:03,473 | INFO     | task id: 47523449
[2025-11-21 21:23:17] 2025-11-21 20:19:03,473 | INFO     | errors: (none)
[2025-11-21 21:23:17] 2025-11-21 20:19:03,473 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 21:23:17] 2025-11-21 20:19:03,474 | INFO     | pilot state: finished 
[2025-11-21 21:23:17] 2025-11-21 20:19:03,474 | INFO     | transexitcode: 0
[2025-11-21 21:23:17] 2025-11-21 20:19:03,474 | INFO     | exeerrorcode: 0
[2025-11-21 21:23:17] 2025-11-21 20:19:03,474 | INFO     | exeerrordiag: 
[2025-11-21 21:23:17] 2025-11-21 20:19:03,474 | INFO     | exitcode: 0
[2025-11-21 21:23:17] 2025-11-21 20:19:03,474 | INFO     | exitmsg: OK
[2025-11-21 21:23:17] 2025-11-21 20:19:03,474 | INFO     | cpuconsumptiontime: 230189 s
[2025-11-21 21:23:17] 2025-11-21 20:19:03,474 | INFO     | nevents: 1000
[2025-11-21 21:23:17] 2025-11-21 20:19:03,474 | INFO     | neventsw: 0
[2025-11-21 21:23:17] 2025-11-21 20:19:03,474 | INFO     | pid: 1103186
[2025-11-21 21:23:17] 2025-11-21 20:19:03,474 | INFO     | pgrp: 1103186
[2025-11-21 21:23:17] 2025-11-21 20:19:03,474 | INFO     | corecount: 4
[2025-11-21 21:23:17] 2025-11-21 20:19:03,475 | INFO     | event service: False
[2025-11-21 21:23:17] 2025-11-21 20:19:03,475 | INFO     | sizes: {0: 2298647, 1: 2298846, 7: 2299108, 11: 2299136, 58280: 2353728, 58283: 2362746, 58285: 2362930, 58293: 2363176}
[2025-11-21 21:23:17] 2025-11-21 20:19:03,475 | INFO     | --------------------------------------------------
[2025-11-21 21:23:17] 2025-11-21 20:19:03,475 | INFO     | 
[2025-11-21 21:23:17] 2025-11-21 20:19:03,475 | INFO     | executing command: ls -lF /scratch/boinc/var/slot128/slots/0
[2025-11-21 21:23:17] 2025-11-21 20:19:03,502 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 21:23:17] 2025-11-21 20:19:03,503 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 21:23:17] 2025-11-21 20:19:03,503 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 21:23:17] 2025-11-21 20:19:03,503 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 21:23:17] 2025-11-21 20:19:03,503 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 21:23:17] 2025-11-21 20:19:03,503 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 21:23:17] 2025-11-21 20:19:03,503 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 21:23:17] 2025-11-21 20:19:03,503 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 21:23:17] 2025-11-21 20:19:03,503 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 21:23:17] 2025-11-21 20:19:03,503 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 21:23:17] 2025-11-21 20:19:03,504 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 21:23:17] 2025-11-21 20:19:03,504 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 21:23:17] 2025-11-21 20:19:03,504 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 21:23:17] 2025-11-21 20:19:03,504 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 21:23:17] 2025-11-21 20:19:03,504 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 21:23:17] 2025-11-21 20:19:03,504 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 21:23:17] 2025-11-21 20:19:03,507 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 21:23:17] 2025-11-21 20:19:03,507 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 21:23:17] 2025-11-21 20:19:03,507 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 21:23:17] 2025-11-21 20:19:03,507 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 21:23:17] 2025-11-21 20:19:03,507 | INFO     | job 6893872777 has completed (purged errors)
[2025-11-21 21:23:17] 2025-11-21 20:19:03,507 | INFO     | overall cleanup function is called
[2025-11-21 21:23:17] 2025-11-21 20:19:04,523 | INFO     | --- collectZombieJob: --- 10, [1103186]
[2025-11-21 21:23:17] 2025-11-21 20:19:04,523 | INFO     | zombie collector waiting for pid 1103186
[2025-11-21 21:23:17] 2025-11-21 20:19:04,523 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 21:23:17] 2025-11-21 20:19:04,523 | INFO     | collected zombie processes
[2025-11-21 21:23:17] 2025-11-21 20:19:04,523 | INFO     | will attempt to kill all subprocesses of pid=1103186
[2025-11-21 21:23:17] 2025-11-21 20:19:05,347 | INFO     | process IDs to be killed: [1103186] (in reverse order)
[2025-11-21 21:23:17] 2025-11-21 20:19:05,628 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 21:23:17] 2025-11-21 20:19:05,628 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 21:23:17] 2025-11-21 20:19:05,662 | INFO     | did not find any defunct processes belonging to 1103186
[2025-11-21 21:23:17] 2025-11-21 20:19:05,695 | INFO     | did not find any defunct processes belonging to 1103186
[2025-11-21 21:23:17] 2025-11-21 20:19:05,697 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 21:23:17] 2025-11-21 20:19:05,697 | INFO     | ready for new job
[2025-11-21 21:23:17] 2025-11-21 20:19:05,697 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 21:23:17] 2025-11-21 20:19:05,703 | INFO     | ***************************************
[2025-11-21 21:23:17] 2025-11-21 20:19:05,703 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 21:23:17] 2025-11-21 20:19:05,703 | INFO     | ***************************************
[2025-11-21 21:23:17] 2025-11-21 20:19:05,704 | INFO     | 
[2025-11-21 21:23:17] 2025-11-21 20:19:05,712 | INFO     | architecture information:
[2025-11-21 21:23:17] 2025-11-21 20:19:05,713 | INFO     | executing command: cat /etc/os-release
[2025-11-21 21:23:17] 2025-11-21 20:19:05,736 | INFO     | cat /etc/os-release:
[2025-11-21 21:23:17] NAME="CentOS Linux"
[2025-11-21 21:23:17] VERSION="7 (Core)"
[2025-11-21 21:23:17] ID="centos"
[2025-11-21 21:23:17] ID_LIKE="rhel fedora"
[2025-11-21 21:23:17] VERSION_ID="7"
[2025-11-21 21:23:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 21:23:17] ANSI_COLOR="0;31"
[2025-11-21 21:23:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 21:23:17] HOME_URL="https://www.centos.org/"
[2025-11-21 21:23:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 21:23:17] 
[2025-11-21 21:23:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 21:23:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 21:23:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 21:23:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 21:23:17] 
[2025-11-21 21:23:17] 2025-11-21 20:19:05,737 | INFO     | ***************************************
[2025-11-21 21:23:17] 2025-11-21 20:19:06,240 | INFO     | executing command: df -mP /scratch/boinc/var/slot128/slots/0
[2025-11-21 21:23:17] 2025-11-21 20:19:06,266 | INFO     | sufficient remaining disk space (3306002841600 B)
[2025-11-21 21:23:17] 2025-11-21 20:19:06,266 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 21:23:17] 2025-11-21 20:19:06,267 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 21:23:17] 2025-11-21 20:19:06,267 | INFO     | update_server=False
[2025-11-21 21:23:17] 2025-11-21 20:19:06,267 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 21:23:17] 2025-11-21 20:19:06,268 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 21:23:17] 2025-11-21 20:19:06,268 | INFO     | aborting loop
[2025-11-21 21:23:17] 2025-11-21 20:19:06,437 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 21:23:17] 2025-11-21 20:19:06,477 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 21:23:17] 2025-11-21 20:19:06,769 | INFO     | all payload control threads have been joined
[2025-11-21 21:23:17] 2025-11-21 20:19:06,770 | INFO     | all data control threads have been joined
[2025-11-21 21:23:17] 2025-11-21 20:19:07,273 | INFO     | [job] retrieve thread has finished
[2025-11-21 21:23:17] 2025-11-21 20:19:07,273 | INFO     | [job] job monitor thread has finished
[2025-11-21 21:23:17] 2025-11-21 20:19:07,480 | INFO     | [payload] validate_post thread has finished
[2025-11-21 21:23:17] 2025-11-21 20:19:07,501 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 21:23:17] 2025-11-21 20:19:07,516 | INFO     | [payload] failed_post thread has finished
[2025-11-21 21:23:17] 2025-11-21 20:19:07,775 | INFO     | [payload] control thread has finished
[2025-11-21 21:23:17] 2025-11-21 20:19:07,776 | INFO     | [data] control thread has finished
[2025-11-21 21:23:17] 2025-11-21 20:19:07,799 | INFO     | all job control threads have been joined
[2025-11-21 21:23:17] 2025-11-21 20:19:07,835 | INFO     | [job] validate thread has finished
[2025-11-21 21:23:17] 2025-11-21 20:19:07,863 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 21:23:17] 2025-11-21 20:19:08,107 | INFO     | [data] copytool_in thread has finished
[2025-11-21 21:23:17] 2025-11-21 20:19:08,213 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 21:23:17] 2025-11-21 20:19:08,457 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 21:23:17] 2025-11-21 20:19:08,482 | INFO     | [data] copytool_out thread has finished
[2025-11-21 21:23:17] 2025-11-21 20:19:08,482 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 21:23:17] 2025-11-21 20:19:08,804 | INFO     | [job] control thread has finished
[2025-11-21 21:23:17] 2025-11-21 20:19:09,487 | INFO     | [job] queue monitor thread has finished
[2025-11-21 21:23:17] 2025-11-21 20:19:10,443 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 21:23:17] 2025-11-21 20:19:35,990 | INFO     | PID=1093874 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 21:23:17] 2025-11-21 20:19:35,990 | INFO     | .. there are 9 such processes running
[2025-11-21 21:23:17] 2025-11-21 20:19:35,991 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 21:23:17] 2025-11-21 20:19:35,991 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 21:23:17] 2025-11-21 20:19:35,991 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 21:23:17] 2025-11-21 20:19:49,136 | INFO     | [monitor] cgroup control has ended
[2025-11-21 21:23:17] 2025-11-21 20:19:50,865 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22530947082048)>', '<ExcThread(monitor, started 22530710537984)>']
[2025-11-21 21:23:17] 2025-11-21 20:19:51,065 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 21:23:17] 2025-11-21 20:19:51,066 | INFO     | [monitor] control thread has ended
[2025-11-21 21:23:17] 2025-11-21 20:19:55,890 | INFO     | all workflow threads have been joined
[2025-11-21 21:23:17] 2025-11-21 20:19:55,891 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 21:23:17] 2025-11-21 20:19:55,891 | INFO     | traces error code: 0
[2025-11-21 21:23:17] 2025-11-21 20:19:55,891 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 21:23:17] 2025-11-21 20:19:56,035 [wrapper] ==== pilot stdout END ====
[2025-11-21 21:23:17] 2025-11-21 20:19:56,039 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 21:23:17] 2025-11-21 20:19:56,043 [wrapper] pilotpid: 1093874
[2025-11-21 21:23:17] 2025-11-21 20:19:56,047 [wrapper] Pilot exit status: 0
[2025-11-21 21:23:17] 2025-11-21 20:19:56,060 [wrapper] pandaids: 6893872777
[2025-11-21 21:23:17] 2025-11-21 20:19:56,246 [wrapper] cleanup supervisor_pilot 2663975 1093875
[2025-11-21 21:23:17] 2025-11-21 20:19:56,250 [wrapper] Test setup, not cleaning
[2025-11-21 21:23:17] 2025-11-21 20:19:56,254 [wrapper] apfmon messages muted
[2025-11-21 21:23:17] 2025-11-21 20:19:56,258 [wrapper] ==== wrapper stdout END ====
[2025-11-21 21:23:17] 2025-11-21 20:19:56,261 [wrapper] ==== wrapper stderr END ====
[2025-11-21 21:23:17]  *** Error codes and diagnostics ***
[2025-11-21 21:23:17]     "exeErrorCode": 0,
[2025-11-21 21:23:17]     "exeErrorDiag": "",
[2025-11-21 21:23:17]     "pilotErrorCode": 0,
[2025-11-21 21:23:17]     "pilotErrorDiag": "",
[2025-11-21 21:23:17]  *** Listing of results directory ***
[2025-11-21 21:23:17] total 1312988
[2025-11-21 21:23:17] -rw-r--r-- 1 boinc boinc    576529 Nov 20 16:07 pilot3.tar.gz
[2025-11-21 21:23:17] -rw-r--r-- 1 boinc boinc      5112 Nov 20 16:20 queuedata.json
[2025-11-21 21:23:17] -rwx------ 1 boinc boinc     36292 Nov 20 16:22 runpilot2-wrapper.sh
[2025-11-21 21:23:17] -rw-r--r-- 1 boinc boinc       100 Nov 21 03:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 21:23:17] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 03:27 run_atlas
[2025-11-21 21:23:17] -rw-r--r-- 1 boinc boinc       105 Nov 21 03:27 job.xml
[2025-11-21 21:23:17] -rw-r--r-- 2 boinc boinc 410291975 Nov 21 05:06 EVNT.47493127._000683.pool.root.1
[2025-11-21 21:23:17] -rw-r--r-- 1 boinc boinc      6686 Nov 21 05:06 init_data.xml
[2025-11-21 21:23:17] -rw-r--r-- 2 boinc boinc     15847 Nov 21 05:06 start_atlas.sh
[2025-11-21 21:23:17] drwxrwx--x 2 boinc boinc      4096 Nov 21 05:06 shared
[2025-11-21 21:23:17] -rw-r--r-- 2 boinc boinc    590098 Nov 21 05:06 input.tar.gz
[2025-11-21 21:23:17] -rw-r--r-- 1 boinc boinc         0 Nov 21 05:06 boinc_lockfile
[2025-11-21 21:23:17] -rw-r--r-- 1 boinc boinc      2785 Nov 21 05:06 pandaJob.out
[2025-11-21 21:23:17] -rw------- 1 boinc boinc    989817 Nov 21 05:07 agis_schedconf.cvmfs.json
[2025-11-21 21:23:17] drwx------ 5 boinc boinc      4096 Nov 21 05:07 pilot3
[2025-11-21 21:23:17] -rw-r--r-- 1 boinc boinc       531 Nov 21 21:13 boinc_task_state.xml
[2025-11-21 21:23:17] -rw------- 1 boinc boinc 910855594 Nov 21 21:18 HITS.47523449._006827.pool.root.1
[2025-11-21 21:23:17] -rw------- 1 boinc boinc      1039 Nov 21 21:18 memory_monitor_summary.json
[2025-11-21 21:23:17] -rw------- 1 boinc boinc   1526164 Nov 21 21:18 agis_ddmendpoints.agis.ALL.json
[2025-11-21 21:23:17] -rw------- 1 boinc boinc   1699791 Nov 21 21:18 log.47523449._006827.job.log.tgz.1
[2025-11-21 21:23:17] -rw------- 1 boinc boinc      8609 Nov 21 21:19 heartbeat.json
[2025-11-21 21:23:17] -rw------- 1 boinc boinc        95 Nov 21 21:19 pilot_heartbeat.json
[2025-11-21 21:23:17] -rw------- 1 boinc boinc      4835 Nov 21 21:19 pilotlog.txt
[2025-11-21 21:23:17] -rw------- 1 boinc boinc   8015853 Nov 21 21:19 log.47523449._006827.job.log.1
[2025-11-21 21:23:17] -rw------- 1 boinc boinc       353 Nov 21 21:19 output.list
[2025-11-21 21:23:17] -rw-r--r-- 1 boinc boinc       620 Nov 21 21:19 runtime_log
[2025-11-21 21:23:17] -rw------- 1 boinc boinc   9738240 Nov 21 21:19 result.tar.gz
[2025-11-21 21:23:17] -rw-r--r-- 1 boinc boinc      9223 Nov 21 21:19 runtime_log.err
[2025-11-21 21:23:17] -rw------- 1 boinc boinc       671 Nov 21 21:19 RQNODmhfLg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9CIKDm5wFoUm.diag
[2025-11-21 21:23:17] -rw-r--r-- 1 boinc boinc        28 Nov 21 21:23 wrapper_checkpoint.txt
[2025-11-21 21:23:17] -rw-r--r-- 1 boinc boinc      8192 Nov 21 21:23 boinc_mmap_file
[2025-11-21 21:23:17] -rw-r--r-- 1 boinc boinc     21124 Nov 21 21:23 stderr.txt
[2025-11-21 21:23:17] HITS file was successfully produced:
[2025-11-21 21:23:17] -rw------- 1 boinc boinc 910855594 Nov 21 21:18 shared/HITS.pool.root.1
[2025-11-21 21:23:17]  *** Contents of shared directory: ***
[2025-11-21 21:23:17] total 1300300
[2025-11-21 21:23:17] -rw-r--r-- 2 boinc boinc 410291975 Nov 21 05:06 ATLAS.root_0
[2025-11-21 21:23:17] -rw-r--r-- 2 boinc boinc     15847 Nov 21 05:06 start_atlas.sh
[2025-11-21 21:23:17] -rw-r--r-- 2 boinc boinc    590098 Nov 21 05:06 input.tar.gz
[2025-11-21 21:23:17] -rw------- 1 boinc boinc 910855594 Nov 21 21:18 HITS.pool.root.1
[2025-11-21 21:23:17] -rw------- 1 boinc boinc   9738240 Nov 21 21:19 result.tar.gz
21:23:18 (1089844): run_atlas exited; CPU time 233069.738349
21:23:18 (1089844): called boinc_finish(0)

</stderr_txt>
]]>

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