Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:02:35 (4009822): wrapper (7.7.26015): starting
13:02:35 (4009822): wrapper: running run_atlas (--nthreads 4)
[2025-11-22 13:02:35] Arguments: --nthreads 4
[2025-11-22 13:02:35] Threads: 4
[2025-11-22 13:02:35] Checking for CVMFS
[2025-11-22 13:02:35] No cvmfs_config command found, will try listing directly
[2025-11-22 13:02:35] CVMFS is ok
[2025-11-22 13:02:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 13:02:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 13:02:35] Further information can be found at the LHC@home message board.
[2025-11-22 13:02:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 13:02:35] Checking for apptainer binary...
[2025-11-22 13:02:35] which: no apptainer in ((null))
[2025-11-22 13:02:35] apptainer is not installed, using version from CVMFS
[2025-11-22 13:02:35] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 13:02:36] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot128/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-11-22 13:02:36] apptainer works
[2025-11-22 13:02:36] Set ATHENA_PROC_NUMBER=4
[2025-11-22 13:02:36] Set ATHENA_CORE_NUMBER=4
[2025-11-22 13:02:36] Starting ATLAS job with PandaID=6893873178
[2025-11-22 13:02:36] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot128/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 04:26:56]  *** The last 200 lines of the pilot log: ***
[2025-11-23 04:26:56] 2025-11-23 03:05:35,732 | INFO     | monitor loop #3678: job 0:6893873178 is in state 'finished'
[2025-11-23 04:26:56] 2025-11-23 03:05:35,732 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 04:26:56] 2025-11-23 03:05:37,205 | INFO     | time since job start (54167s) is within the limit (172800.0s)
[2025-11-23 04:26:56] 2025-11-23 03:05:37,972 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 04:26:56] 2025-11-23 03:05:37,993 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2768.330210937499
[2025-11-23 04:26:56] 2025-11-23 03:05:38,022 | INFO     | using path: /scratch/boinc/var/slot128/slots/0/PanDA_Pilot-6893873178/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 04:26:56] 2025-11-23 03:05:38,023 | INFO     | extracted standard info from prmon json
[2025-11-23 04:26:56] 2025-11-23 03:05:38,023 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 04:26:56] 2025-11-23 03:05:38,024 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 04:26:56] 2025-11-23 03:05:38,042 | INFO     | fitting pss+swap vs Time
[2025-11-23 04:26:56] 2025-11-23 03:05:38,044 | INFO     | sum of square deviations: 217128469222.0
[2025-11-23 04:26:56] 2025-11-23 03:05:38,066 | INFO     | sum of deviations: 646606006426.0001
[2025-11-23 04:26:56] 2025-11-23 03:05:38,066 | INFO     | mean x: 1763840058.5
[2025-11-23 04:26:56] 2025-11-23 03:05:38,066 | INFO     | mean y: 2272180.403153153
[2025-11-23 04:26:56] 2025-11-23 03:05:38,066 | INFO     | intersect: -5250422596.506959
[2025-11-23 04:26:56] 2025-11-23 03:05:38,067 | INFO     | chi2: 4.504361388059848
[2025-11-23 04:26:56] 2025-11-23 03:05:38,068 | INFO     | sum of square deviations: 213481368282.0
[2025-11-23 04:26:56] 2025-11-23 03:05:38,094 | INFO     | sum of deviations: 844131609953.9999
[2025-11-23 04:26:56] 2025-11-23 03:05:38,094 | INFO     | mean x: 1763839906.0
[2025-11-23 04:26:56] 2025-11-23 03:05:38,094 | INFO     | mean y: 2280431.686296716
[2025-11-23 04:26:56] 2025-11-23 03:05:38,094 | INFO     | intersect: -6972159687.069639
[2025-11-23 04:26:56] 2025-11-23 03:05:38,096 | INFO     | chi2: 1.9903156048967232
[2025-11-23 04:26:56] 2025-11-23 03:05:38,096 | INFO     | current chi2=1.9903156048967232 (change=55.81358968726071 %)
[2025-11-23 04:26:56] 2025-11-23 03:05:38,097 | INFO     | sum of square deviations: 209875337879.5
[2025-11-23 04:26:56] 2025-11-23 03:05:38,121 | INFO     | sum of deviations: 846604611655.4998
[2025-11-23 04:26:56] 2025-11-23 03:05:38,121 | INFO     | mean x: 1763839753.5
[2025-11-23 04:26:56] 2025-11-23 03:05:38,121 | INFO     | mean y: 2280533.730068337
[2025-11-23 04:26:56] 2025-11-23 03:05:38,121 | INFO     | intersect: -7112775883.197605
[2025-11-23 04:26:56] 2025-11-23 03:05:38,122 | INFO     | chi2: 1.956414970240714
[2025-11-23 04:26:56] 2025-11-23 03:05:38,123 | INFO     | current chi2=1.956414970240714 (change=1.7032793478885582 %)
[2025-11-23 04:26:56] 2025-11-23 03:05:38,123 | INFO     | right removable region: 877
[2025-11-23 04:26:56] 2025-11-23 03:05:38,124 | INFO     | sum of square deviations: 213481368282.0
[2025-11-23 04:26:56] 2025-11-23 03:05:38,140 | INFO     | sum of deviations: 492640082546.99994
[2025-11-23 04:26:56] 2025-11-23 03:05:38,140 | INFO     | mean x: 1763840211.0
[2025-11-23 04:26:56] 2025-11-23 03:05:38,140 | INFO     | mean y: 2278604.550396376
[2025-11-23 04:26:56] 2025-11-23 03:05:38,140 | INFO     | intersect: -4068045630.9535017
[2025-11-23 04:26:56] 2025-11-23 03:05:38,141 | INFO     | chi2: 2.707323381857619
[2025-11-23 04:26:56] 2025-11-23 03:05:38,141 | INFO     | current chi2=2.707323381857619 (change=39.895511291918396 %)
[2025-11-23 04:26:56] 2025-11-23 03:05:38,142 | INFO     | sum of square deviations: 209875337879.5
[2025-11-23 04:26:56] 2025-11-23 03:05:38,161 | INFO     | sum of deviations: 457410614778.5002
[2025-11-23 04:26:56] 2025-11-23 03:05:38,161 | INFO     | mean x: 1763840363.5
[2025-11-23 04:26:56] 2025-11-23 03:05:38,161 | INFO     | mean y: 2280093.7323462414
[2025-11-23 04:26:56] 2025-11-23 03:05:38,161 | INFO     | intersect: -3841903378.1860757
[2025-11-23 04:26:56] 2025-11-23 03:05:38,162 | INFO     | chi2: 2.6693122030146124
[2025-11-23 04:26:56] 2025-11-23 03:05:38,163 | INFO     | current chi2=2.6693122030146124 (change=1.4040132441409872 %)
[2025-11-23 04:26:56] 2025-11-23 03:05:38,163 | INFO     | left removable region: 20
[2025-11-23 04:26:56] 2025-11-23 03:05:38,164 | INFO     | sum of square deviations: 195173251988.0
[2025-11-23 04:26:56] 2025-11-23 03:05:38,184 | INFO     | sum of deviations: 602595994826.0
[2025-11-23 04:26:56] 2025-11-23 03:05:38,184 | INFO     | mean x: 1763840333.0
[2025-11-23 04:26:56] 2025-11-23 03:05:38,184 | INFO     | mean y: 2290834.7934655775
[2025-11-23 04:26:56] 2025-11-23 03:05:38,184 | INFO     | intersect: -5443553354.161834
[2025-11-23 04:26:56] 2025-11-23 03:05:38,185 | INFO     | chi2: 0.08003381320829875
[2025-11-23 04:26:56] 2025-11-23 03:05:38,186 | INFO     | current memory leak: 3.09 B/s (using 857 data points, chi2=0.08)
[2025-11-23 04:26:56] 2025-11-23 03:05:38,188 | INFO     | could have reported an average CPU frequency of 2720 MHz (33 samples)
[2025-11-23 04:26:56] 2025-11-23 03:05:38,188 | INFO     | ..............................
[2025-11-23 04:26:56] 2025-11-23 03:05:38,188 | INFO     | . Timing measurements:
[2025-11-23 04:26:56] 2025-11-23 03:05:38,188 | INFO     | . get job = 0 s
[2025-11-23 04:26:56] 2025-11-23 03:05:38,188 | INFO     | . initial setup = 1 s
[2025-11-23 04:26:56] 2025-11-23 03:05:38,188 | INFO     | . payload setup = 9 s
[2025-11-23 04:26:56] 2025-11-23 03:05:38,188 | INFO     | . stage-in = 0 s
[2025-11-23 04:26:56] 2025-11-23 03:05:38,189 | INFO     | . payload execution = 54122 s
[2025-11-23 04:26:56] 2025-11-23 03:05:38,189 | INFO     | . stage-out = 3 s
[2025-11-23 04:26:56] 2025-11-23 03:05:38,189 | INFO     | . log creation = 0 s
[2025-11-23 04:26:56] 2025-11-23 03:05:38,189 | INFO     | ..............................
[2025-11-23 04:26:56] 2025-11-23 03:05:38,291 | INFO     | 
[2025-11-23 04:26:56] 2025-11-23 03:05:38,291 | INFO     | job summary report
[2025-11-23 04:26:56] 2025-11-23 03:05:38,291 | INFO     | --------------------------------------------------
[2025-11-23 04:26:56] 2025-11-23 03:05:38,292 | INFO     | PanDA job id: 6893873178
[2025-11-23 04:26:56] 2025-11-23 03:05:38,292 | INFO     | task id: 47523449
[2025-11-23 04:26:56] 2025-11-23 03:05:38,292 | INFO     | errors: (none)
[2025-11-23 04:26:56] 2025-11-23 03:05:38,292 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 04:26:56] 2025-11-23 03:05:38,292 | INFO     | pilot state: finished 
[2025-11-23 04:26:56] 2025-11-23 03:05:38,292 | INFO     | transexitcode: 0
[2025-11-23 04:26:56] 2025-11-23 03:05:38,292 | INFO     | exeerrorcode: 0
[2025-11-23 04:26:56] 2025-11-23 03:05:38,292 | INFO     | exeerrordiag: 
[2025-11-23 04:26:56] 2025-11-23 03:05:38,292 | INFO     | exitcode: 0
[2025-11-23 04:26:56] 2025-11-23 03:05:38,292 | INFO     | exitmsg: OK
[2025-11-23 04:26:56] 2025-11-23 03:05:38,292 | INFO     | cpuconsumptiontime: 214379 s
[2025-11-23 04:26:56] 2025-11-23 03:05:38,292 | INFO     | nevents: 1000
[2025-11-23 04:26:56] 2025-11-23 03:05:38,293 | INFO     | neventsw: 0
[2025-11-23 04:26:56] 2025-11-23 03:05:38,293 | INFO     | pid: 4032494
[2025-11-23 04:26:56] 2025-11-23 03:05:38,293 | INFO     | pgrp: 4032494
[2025-11-23 04:26:56] 2025-11-23 03:05:38,293 | INFO     | corecount: 4
[2025-11-23 04:26:56] 2025-11-23 03:05:38,293 | INFO     | event service: False
[2025-11-23 04:26:56] 2025-11-23 03:05:38,293 | INFO     | sizes: {0: 2298767, 1: 2298767, 7: 2299057, 11: 2299085, 54135: 2351398, 54136: 2351397, 54139: 2360599, 54142: 2360655, 54150: 2360965}
[2025-11-23 04:26:56] 2025-11-23 03:05:38,293 | INFO     | --------------------------------------------------
[2025-11-23 04:26:56] 2025-11-23 03:05:38,293 | INFO     | 
[2025-11-23 04:26:56] 2025-11-23 03:05:38,293 | INFO     | executing command: ls -lF /scratch/boinc/var/slot128/slots/0
[2025-11-23 04:26:56] 2025-11-23 03:05:38,324 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 04:26:56] 2025-11-23 03:05:38,325 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 04:26:56] 2025-11-23 03:05:38,325 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 04:26:56] 2025-11-23 03:05:38,325 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 04:26:56] 2025-11-23 03:05:38,325 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 04:26:56] 2025-11-23 03:05:38,325 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 04:26:56] 2025-11-23 03:05:38,325 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 04:26:56] 2025-11-23 03:05:38,325 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 04:26:56] 2025-11-23 03:05:38,325 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 04:26:56] 2025-11-23 03:05:38,325 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 04:26:56] 2025-11-23 03:05:38,326 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 04:26:56] 2025-11-23 03:05:38,326 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 04:26:56] 2025-11-23 03:05:38,326 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 04:26:56] 2025-11-23 03:05:38,326 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 04:26:56] 2025-11-23 03:05:38,326 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 04:26:56] 2025-11-23 03:05:38,326 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 04:26:56] 2025-11-23 03:05:38,326 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 04:26:56] 2025-11-23 03:05:38,326 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 04:26:56] 2025-11-23 03:05:38,326 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 04:26:56] 2025-11-23 03:05:38,326 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 04:26:56] 2025-11-23 03:05:38,327 | INFO     | job 6893873178 has completed (purged errors)
[2025-11-23 04:26:56] 2025-11-23 03:05:38,327 | INFO     | overall cleanup function is called
[2025-11-23 04:26:56] 2025-11-23 03:05:39,343 | INFO     | --- collectZombieJob: --- 10, [4032494]
[2025-11-23 04:26:56] 2025-11-23 03:05:39,344 | INFO     | zombie collector waiting for pid 4032494
[2025-11-23 04:26:56] 2025-11-23 03:05:39,344 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 04:26:56] 2025-11-23 03:05:39,344 | INFO     | collected zombie processes
[2025-11-23 04:26:56] 2025-11-23 03:05:39,344 | INFO     | will attempt to kill all subprocesses of pid=4032494
[2025-11-23 04:26:56] 2025-11-23 03:05:40,033 | INFO     | process IDs to be killed: [4032494] (in reverse order)
[2025-11-23 04:26:56] 2025-11-23 03:05:40,274 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 04:26:56] 2025-11-23 03:05:40,275 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 04:26:56] 2025-11-23 03:05:40,310 | INFO     | did not find any defunct processes belonging to 4032494
[2025-11-23 04:26:56] 2025-11-23 03:05:40,342 | INFO     | did not find any defunct processes belonging to 4032494
[2025-11-23 04:26:56] 2025-11-23 03:05:40,344 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 04:26:56] 2025-11-23 03:05:40,344 | INFO     | ready for new job
[2025-11-23 04:26:56] 2025-11-23 03:05:40,344 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 04:26:56] 2025-11-23 03:05:40,349 | INFO     | ***************************************
[2025-11-23 04:26:56] 2025-11-23 03:05:40,350 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 04:26:56] 2025-11-23 03:05:40,350 | INFO     | ***************************************
[2025-11-23 04:26:56] 2025-11-23 03:05:40,350 | INFO     | 
[2025-11-23 04:26:56] 2025-11-23 03:05:40,357 | INFO     | architecture information:
[2025-11-23 04:26:56] 2025-11-23 03:05:40,358 | INFO     | executing command: cat /etc/os-release
[2025-11-23 04:26:56] 2025-11-23 03:05:40,378 | INFO     | cat /etc/os-release:
[2025-11-23 04:26:56] NAME="CentOS Linux"
[2025-11-23 04:26:56] VERSION="7 (Core)"
[2025-11-23 04:26:56] ID="centos"
[2025-11-23 04:26:56] ID_LIKE="rhel fedora"
[2025-11-23 04:26:56] VERSION_ID="7"
[2025-11-23 04:26:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 04:26:56] ANSI_COLOR="0;31"
[2025-11-23 04:26:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 04:26:56] HOME_URL="https://www.centos.org/"
[2025-11-23 04:26:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 04:26:56] 
[2025-11-23 04:26:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 04:26:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 04:26:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 04:26:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 04:26:56] 
[2025-11-23 04:26:56] 2025-11-23 03:05:40,379 | INFO     | ***************************************
[2025-11-23 04:26:56] 2025-11-23 03:05:40,882 | INFO     | executing command: df -mP /scratch/boinc/var/slot128/slots/0
[2025-11-23 04:26:56] 2025-11-23 03:05:40,903 | INFO     | sufficient remaining disk space (3322162446336 B)
[2025-11-23 04:26:56] 2025-11-23 03:05:40,904 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 04:26:56] 2025-11-23 03:05:40,904 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 04:26:56] 2025-11-23 03:05:40,904 | INFO     | update_server=False
[2025-11-23 04:26:56] 2025-11-23 03:05:40,904 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 04:26:56] 2025-11-23 03:05:40,958 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 04:26:56] 2025-11-23 03:05:40,963 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 04:26:56] 2025-11-23 03:05:41,491 | INFO     | all data control threads have been joined
[2025-11-23 04:26:56] 2025-11-23 03:05:41,605 | INFO     | all payload control threads have been joined
[2025-11-23 04:26:56] 2025-11-23 03:05:41,744 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 04:26:56] 2025-11-23 03:05:41,744 | INFO     | aborting loop
[2025-11-23 04:26:56] 2025-11-23 03:05:41,885 | INFO     | all job control threads have been joined
[2025-11-23 04:26:56] 2025-11-23 03:05:41,909 | INFO     | [job] retrieve thread has finished
[2025-11-23 04:26:56] 2025-11-23 03:05:42,256 | INFO     | [data] copytool_in thread has finished
[2025-11-23 04:26:56] 2025-11-23 03:05:42,263 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 04:26:56] 2025-11-23 03:05:42,497 | INFO     | [data] control thread has finished
[2025-11-23 04:26:56] 2025-11-23 03:05:42,574 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 04:26:56] 2025-11-23 03:05:42,611 | INFO     | [payload] control thread has finished
[2025-11-23 04:26:56] 2025-11-23 03:05:42,723 | INFO     | [job] validate thread has finished
[2025-11-23 04:26:56] 2025-11-23 03:05:42,749 | INFO     | [job] job monitor thread has finished
[2025-11-23 04:26:56] 2025-11-23 03:05:42,811 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 04:26:56] 2025-11-23 03:05:42,844 | INFO     | [payload] failed_post thread has finished
[2025-11-23 04:26:56] 2025-11-23 03:05:42,890 | INFO     | [job] control thread has finished
[2025-11-23 04:26:56] 2025-11-23 03:05:42,969 | INFO     | [data] copytool_out thread has finished
[2025-11-23 04:26:56] 2025-11-23 03:05:43,154 | INFO     | [payload] validate_post thread has finished
[2025-11-23 04:26:56] 2025-11-23 03:05:43,268 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 04:26:56] 2025-11-23 03:05:43,301 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 04:26:56] 2025-11-23 03:05:44,306 | INFO     | [job] queue monitor thread has finished
[2025-11-23 04:26:56] 2025-11-23 03:05:44,964 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 04:26:56] 2025-11-23 03:06:11,283 | INFO     | PID=4017627 has CPU usage=7.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 04:26:56] 2025-11-23 03:06:11,283 | INFO     | .. there are 10 such processes running
[2025-11-23 04:26:56] 2025-11-23 03:06:11,284 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 04:26:56] 2025-11-23 03:06:11,284 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 04:26:56] 2025-11-23 03:06:11,284 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 04:26:56] 2025-11-23 03:06:18,237 | INFO     | [monitor] cgroup control has ended
[2025-11-23 04:26:56] 2025-11-23 03:06:19,337 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22461930972992)>', '<ExcThread(monitor, started 22461693265664)>']
[2025-11-23 04:26:56] 2025-11-23 03:06:20,325 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 04:26:56] 2025-11-23 03:06:20,326 | INFO     | [monitor] control thread has ended
[2025-11-23 04:26:56] 2025-11-23 03:06:24,354 | INFO     | all workflow threads have been joined
[2025-11-23 04:26:56] 2025-11-23 03:06:24,355 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 04:26:56] 2025-11-23 03:06:24,355 | INFO     | traces error code: 0
[2025-11-23 04:26:56] 2025-11-23 03:06:24,355 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 04:26:56] 2025-11-23 03:06:24,490 [wrapper] ==== pilot stdout END ====
[2025-11-23 04:26:56] 2025-11-23 03:06:24,494 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 04:26:56] 2025-11-23 03:06:24,497 [wrapper] pilotpid: 4017627
[2025-11-23 04:26:56] 2025-11-23 03:06:24,501 [wrapper] Pilot exit status: 0
[2025-11-23 04:26:56] 2025-11-23 03:06:24,515 [wrapper] pandaids: 6893873178
[2025-11-23 04:26:56] 2025-11-23 03:06:24,679 [wrapper] cleanup supervisor_pilot 1213416 4017628
[2025-11-23 04:26:56] 2025-11-23 03:06:24,683 [wrapper] Test setup, not cleaning
[2025-11-23 04:26:56] 2025-11-23 03:06:24,687 [wrapper] apfmon messages muted
[2025-11-23 04:26:56] 2025-11-23 03:06:24,691 [wrapper] ==== wrapper stdout END ====
[2025-11-23 04:26:56] 2025-11-23 03:06:24,695 [wrapper] ==== wrapper stderr END ====
[2025-11-23 04:26:56]  *** Error codes and diagnostics ***
[2025-11-23 04:26:56]     "exeErrorCode": 0,
[2025-11-23 04:26:56]     "exeErrorDiag": "",
[2025-11-23 04:26:56]     "pilotErrorCode": 0,
[2025-11-23 04:26:56]     "pilotErrorDiag": "",
[2025-11-23 04:26:56]  *** Listing of results directory ***
[2025-11-23 04:26:56] total 1302988
[2025-11-23 04:26:56] -rw-r--r-- 1 boinc boinc    576529 Nov 20 16:07 pilot3.tar.gz
[2025-11-23 04:26:56] -rw-r--r-- 1 boinc boinc      5112 Nov 20 16:20 queuedata.json
[2025-11-23 04:26:56] -rwx------ 1 boinc boinc     36292 Nov 20 16:22 runpilot2-wrapper.sh
[2025-11-23 04:26:56] -rw-r--r-- 1 boinc boinc       100 Nov 22 13:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 04:26:56] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 13:02 run_atlas
[2025-11-23 04:26:56] -rw-r--r-- 1 boinc boinc       105 Nov 22 13:02 job.xml
[2025-11-23 04:26:56] -rw-r--r-- 1 boinc boinc      6687 Nov 22 13:02 init_data.xml
[2025-11-23 04:26:56] -rw-r--r-- 2 boinc boinc 408766337 Nov 22 13:02 EVNT.47493127._000690.pool.root.1
[2025-11-23 04:26:56] -rw-r--r-- 2 boinc boinc     15847 Nov 22 13:02 start_atlas.sh
[2025-11-23 04:26:56] drwxrwx--x 2 boinc boinc      4096 Nov 22 13:02 shared
[2025-11-23 04:26:56] -rw-r--r-- 2 boinc boinc    590102 Nov 22 13:02 input.tar.gz
[2025-11-23 04:26:56] -rw-r--r-- 1 boinc boinc         0 Nov 22 13:02 boinc_lockfile
[2025-11-23 04:26:56] -rw-r--r-- 1 boinc boinc      2784 Nov 22 13:02 pandaJob.out
[2025-11-23 04:26:56] -rw------- 1 boinc boinc    989768 Nov 22 13:02 agis_schedconf.cvmfs.json
[2025-11-23 04:26:56] drwx------ 5 boinc boinc      4096 Nov 22 13:02 pilot3
[2025-11-23 04:26:56] -rw-r--r-- 1 boinc boinc       532 Nov 23 03:58 boinc_task_state.xml
[2025-11-23 04:26:56] -rw------- 1 boinc boinc 903223087 Nov 23 04:04 HITS.47523449._006900.pool.root.1
[2025-11-23 04:26:56] -rw------- 1 boinc boinc      1041 Nov 23 04:05 memory_monitor_summary.json
[2025-11-23 04:26:56] -rw------- 1 boinc boinc   1526164 Nov 23 04:05 agis_ddmendpoints.agis.ALL.json
[2025-11-23 04:26:56] -rw------- 1 boinc boinc   1649515 Nov 23 04:05 log.47523449._006900.job.log.tgz.1
[2025-11-23 04:26:56] -rw------- 1 boinc boinc      8595 Nov 23 04:05 heartbeat.json
[2025-11-23 04:26:56] -rw------- 1 boinc boinc        95 Nov 23 04:06 pilot_heartbeat.json
[2025-11-23 04:26:56] -rw------- 1 boinc boinc      4836 Nov 23 04:06 pilotlog.txt
[2025-11-23 04:26:56] -rw------- 1 boinc boinc   7521778 Nov 23 04:06 log.47523449._006900.job.log.1
[2025-11-23 04:26:56] -rw------- 1 boinc boinc       353 Nov 23 04:06 output.list
[2025-11-23 04:26:56] -rw-r--r-- 1 boinc boinc       620 Nov 23 04:06 runtime_log
[2025-11-23 04:26:56] -rw------- 1 boinc boinc   9195520 Nov 23 04:06 result.tar.gz
[2025-11-23 04:26:56] -rw-r--r-- 1 boinc boinc      9223 Nov 23 04:06 runtime_log.err
[2025-11-23 04:26:56] -rw------- 1 boinc boinc       670 Nov 23 04:06 Ne8NDm5eLg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm3CIKDmrujltn.diag
[2025-11-23 04:26:56] -rw-r--r-- 1 boinc boinc        28 Nov 23 04:26 wrapper_checkpoint.txt
[2025-11-23 04:26:56] -rw-r--r-- 1 boinc boinc      8192 Nov 23 04:26 boinc_mmap_file
[2025-11-23 04:26:56] -rw-r--r-- 1 boinc boinc     21086 Nov 23 04:26 stderr.txt
[2025-11-23 04:26:56] HITS file was successfully produced:
[2025-11-23 04:26:56] -rw------- 1 boinc boinc 903223087 Nov 23 04:04 shared/HITS.pool.root.1
[2025-11-23 04:26:56]  *** Contents of shared directory: ***
[2025-11-23 04:26:56] total 1290828
[2025-11-23 04:26:56] -rw-r--r-- 2 boinc boinc 408766337 Nov 22 13:02 ATLAS.root_0
[2025-11-23 04:26:56] -rw-r--r-- 2 boinc boinc     15847 Nov 22 13:02 start_atlas.sh
[2025-11-23 04:26:56] -rw-r--r-- 2 boinc boinc    590102 Nov 22 13:02 input.tar.gz
[2025-11-23 04:26:56] -rw------- 1 boinc boinc 903223087 Nov 23 04:04 HITS.pool.root.1
[2025-11-23 04:26:56] -rw------- 1 boinc boinc   9195520 Nov 23 04:06 result.tar.gz
04:26:57 (4009822): run_atlas exited; CPU time 216904.505200
04:26:57 (4009822): called boinc_finish(0)

</stderr_txt>
]]>

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