Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:14:02 (5970): wrapper (7.7.26015): starting
04:14:02 (5970): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 04:14:02] Arguments: --nthreads 8
[2025-11-24 04:14:02] Threads: 8
[2025-11-24 04:14:02] Checking for CVMFS
[2025-11-24 04:14:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 04:14:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 04:14:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 04:14:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 04:14:04] 2.11.2.0 30898 281762 138804 153230 2 179 23172268 25165824 4632 130560 4 127454534 99.877 75873034 3173 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 04:14:04] CVMFS is ok
[2025-11-24 04:14:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 04:14:05] Checking for apptainer binary...
[2025-11-24 04:14:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 04:14:05] Running /usr/bin/apptainer --version
[2025-11-24 04:14:05] apptainer version 1.3.2-1.el7
[2025-11-24 04:14:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 04:14:19] cg-vwn285.simple-grid.lan
[2025-11-24 04:14:19] apptainer works
[2025-11-24 04:14:19] Set ATHENA_PROC_NUMBER=8
[2025-11-24 04:14:19] Set ATHENA_CORE_NUMBER=8
[2025-11-24 04:14:19] Starting ATLAS job with PandaID=6893840263
[2025-11-24 04:14:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 01:24:03]  *** The last 200 lines of the pilot log: ***
[2025-11-25 01:24:03] 2025-11-25 00:23:15,471 | INFO     | time since job start (75896s) is within the limit (172800.0s)
[2025-11-25 01:24:03] 2025-11-25 00:23:16,012 | INFO     | monitor loop #5092: job 0:6893840263 is in state 'finished'
[2025-11-25 01:24:03] 2025-11-25 00:23:16,012 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:24:03] 2025-11-25 00:23:17,477 | INFO     | time since job start (75898s) is within the limit (172800.0s)
[2025-11-25 01:24:03] 2025-11-25 00:23:18,517 | INFO     | monitor loop #5093: job 0:6893840263 is in state 'finished'
[2025-11-25 01:24:03] 2025-11-25 00:23:18,517 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:24:03] 2025-11-25 00:23:19,483 | INFO     | time since job start (75900s) is within the limit (172800.0s)
[2025-11-25 01:24:03] 2025-11-25 00:23:21,024 | INFO     | monitor loop #5094: job 0:6893840263 is in state 'finished'
[2025-11-25 01:24:03] 2025-11-25 00:23:21,024 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:24:03] 2025-11-25 00:23:21,496 | INFO     | time since job start (75902s) is within the limit (172800.0s)
[2025-11-25 01:24:03] 2025-11-25 00:23:23,505 | INFO     | time since job start (75904s) is within the limit (172800.0s)
[2025-11-25 01:24:03] 2025-11-25 00:23:23,528 | INFO     | monitor loop #5095: job 0:6893840263 is in state 'finished'
[2025-11-25 01:24:03] 2025-11-25 00:23:23,528 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:24:03] 2025-11-25 00:23:24,960 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 01:24:03] 2025-11-25 00:23:24,961 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 01:24:03] 2025-11-25 00:23:24,963 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-6893840263/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 01:24:03] 2025-11-25 00:23:24,964 | INFO     | extracted standard info from prmon json
[2025-11-25 01:24:03] 2025-11-25 00:23:24,964 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 01:24:03] 2025-11-25 00:23:24,964 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 01:24:03] 2025-11-25 00:23:24,988 | INFO     | fitting pss+swap vs Time
[2025-11-25 01:24:03] 2025-11-25 00:23:24,990 | INFO     | sum of square deviations: 582674594819.3148
[2025-11-25 01:24:03] 2025-11-25 00:23:25,044 | INFO     | sum of deviations: 2072589790895.788
[2025-11-25 01:24:03] 2025-11-25 00:23:25,044 | INFO     | mean x: 1763992436.4351702
[2025-11-25 01:24:03] 2025-11-25 00:23:25,044 | INFO     | mean y: 2827718.078606159
[2025-11-25 01:24:03] 2025-11-25 00:23:25,044 | INFO     | intersect: -6271742595.230905
[2025-11-25 01:24:03] 2025-11-25 00:23:25,046 | INFO     | chi2: 29.890649530106906
[2025-11-25 01:24:03] 2025-11-25 00:23:25,048 | INFO     | sum of square deviations: 575620888942.4232
[2025-11-25 01:24:03] 2025-11-25 00:23:25,090 | INFO     | sum of deviations: 2481758246184.371
[2025-11-25 01:24:03] 2025-11-25 00:23:25,090 | INFO     | mean x: 1763992283.9389749
[2025-11-25 01:24:03] 2025-11-25 00:23:25,091 | INFO     | mean y: 2836563.004882018
[2025-11-25 01:24:03] 2025-11-25 00:23:25,091 | INFO     | intersect: -7602520506.149441
[2025-11-25 01:24:03] 2025-11-25 00:23:25,092 | INFO     | chi2: 26.52798833700624
[2025-11-25 01:24:03] 2025-11-25 00:23:25,093 | INFO     | current chi2=26.52798833700624 (change=11.249876620157343 %)
[2025-11-25 01:24:03] 2025-11-25 00:23:25,093 | INFO     | right removable region: 1228
[2025-11-25 01:24:03] 2025-11-25 00:23:25,094 | INFO     | sum of square deviations: 575620185002.4229
[2025-11-25 01:24:03] 2025-11-25 00:23:25,145 | INFO     | sum of deviations: 1541945488681.646
[2025-11-25 01:24:03] 2025-11-25 00:23:25,145 | INFO     | mean x: 1763992588.9389749
[2025-11-25 01:24:03] 2025-11-25 00:23:25,145 | INFO     | mean y: 2839189.6753458097
[2025-11-25 01:24:03] 2025-11-25 00:23:25,145 | INFO     | intersect: -4722464900.504989
[2025-11-25 01:24:03] 2025-11-25 00:23:25,147 | INFO     | chi2: 24.91061791436267
[2025-11-25 01:24:03] 2025-11-25 00:23:25,147 | INFO     | current chi2=24.91061791436267 (change=16.660834388119177 %)
[2025-11-25 01:24:03] 2025-11-25 00:23:25,147 | INFO     | left removable region: 10
[2025-11-25 01:24:03] 2025-11-25 00:23:25,149 | INFO     | sum of square deviations: 560302217481.1375
[2025-11-25 01:24:03] 2025-11-25 00:23:25,195 | INFO     | sum of deviations: 1576335226867.5942
[2025-11-25 01:24:03] 2025-11-25 00:23:25,195 | INFO     | mean x: 1763992558.447455
[2025-11-25 01:24:03] 2025-11-25 00:23:25,195 | INFO     | mean y: 2860349.86863711
[2025-11-25 01:24:03] 2025-11-25 00:23:25,196 | INFO     | intersect: -4959896396.505701
[2025-11-25 01:24:03] 2025-11-25 00:23:25,197 | INFO     | chi2: 16.962866302543034
[2025-11-25 01:24:03] 2025-11-25 00:23:25,197 | INFO     | current memory leak: 2.81 B/s (using 1218 data points, chi2=16.96)
[2025-11-25 01:24:03] 2025-11-25 00:23:25,199 | INFO     | could have reported an average CPU frequency of 1999 MHz (41 samples)
[2025-11-25 01:24:03] 2025-11-25 00:23:25,199 | INFO     | ..............................
[2025-11-25 01:24:03] 2025-11-25 00:23:25,200 | INFO     | . Timing measurements:
[2025-11-25 01:24:03] 2025-11-25 00:23:25,200 | INFO     | . get job = 0 s
[2025-11-25 01:24:03] 2025-11-25 00:23:25,200 | INFO     | . initial setup = 13 s
[2025-11-25 01:24:03] 2025-11-25 00:23:25,200 | INFO     | . payload setup = 163 s
[2025-11-25 01:24:03] 2025-11-25 00:23:25,200 | INFO     | . stage-in = 0 s
[2025-11-25 01:24:03] 2025-11-25 00:23:25,200 | INFO     | . payload execution = 75422 s
[2025-11-25 01:24:03] 2025-11-25 00:23:25,200 | INFO     | . stage-out = 5 s
[2025-11-25 01:24:03] 2025-11-25 00:23:25,200 | INFO     | . log creation = 1 s
[2025-11-25 01:24:03] 2025-11-25 00:23:25,200 | INFO     | ..............................
[2025-11-25 01:24:03] 2025-11-25 00:23:25,325 | INFO     | 
[2025-11-25 01:24:03] 2025-11-25 00:23:25,325 | INFO     | job summary report
[2025-11-25 01:24:03] 2025-11-25 00:23:25,325 | INFO     | --------------------------------------------------
[2025-11-25 01:24:03] 2025-11-25 00:23:25,325 | INFO     | PanDA job id: 6893840263
[2025-11-25 01:24:03] 2025-11-25 00:23:25,325 | INFO     | task id: 47523449
[2025-11-25 01:24:03] 2025-11-25 00:23:25,325 | INFO     | errors: (none)
[2025-11-25 01:24:03] 2025-11-25 00:23:25,326 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 01:24:03] 2025-11-25 00:23:25,326 | INFO     | pilot state: finished 
[2025-11-25 01:24:03] 2025-11-25 00:23:25,326 | INFO     | transexitcode: 0
[2025-11-25 01:24:03] 2025-11-25 00:23:25,326 | INFO     | exeerrorcode: 0
[2025-11-25 01:24:03] 2025-11-25 00:23:25,326 | INFO     | exeerrordiag: 
[2025-11-25 01:24:03] 2025-11-25 00:23:25,326 | INFO     | exitcode: 0
[2025-11-25 01:24:03] 2025-11-25 00:23:25,326 | INFO     | exitmsg: OK
[2025-11-25 01:24:03] 2025-11-25 00:23:25,326 | INFO     | cpuconsumptiontime: 342253 s
[2025-11-25 01:24:03] 2025-11-25 00:23:25,326 | INFO     | nevents: 1000
[2025-11-25 01:24:03] 2025-11-25 00:23:25,326 | INFO     | neventsw: 0
[2025-11-25 01:24:03] 2025-11-25 00:23:25,327 | INFO     | pid: 16345
[2025-11-25 01:24:03] 2025-11-25 00:23:25,327 | INFO     | pgrp: 16345
[2025-11-25 01:24:03] 2025-11-25 00:23:25,327 | INFO     | corecount: 8
[2025-11-25 01:24:03] 2025-11-25 00:23:25,327 | INFO     | event service: False
[2025-11-25 01:24:03] 2025-11-25 00:23:25,327 | INFO     | sizes: {0: 2297979, 1: 2298665, 2: 2298864, 12: 2298864, 23: 2298892, 34: 2298920, 45: 2299076, 55: 2299104, 66: 2299132, 77: 2299160, 88: 2299216, 98: 2299524, 10
[2025-11-25 01:24:03] 2025-11-25 00:23:25,327 | INFO     | --------------------------------------------------
[2025-11-25 01:24:03] 2025-11-25 00:23:25,327 | INFO     | 
[2025-11-25 01:24:03] 2025-11-25 00:23:25,327 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-11-25 01:24:03] 2025-11-25 00:23:25,515 | INFO     | time since job start (75906s) is within the limit (172800.0s)
[2025-11-25 01:24:03] 2025-11-25 00:23:25,695 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 01:24:03] 2025-11-25 00:23:25,695 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 01:24:03] 2025-11-25 00:23:25,695 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 01:24:03] 2025-11-25 00:23:25,695 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 01:24:03] 2025-11-25 00:23:25,695 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 01:24:03] 2025-11-25 00:23:25,695 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 01:24:03] 2025-11-25 00:23:25,696 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 01:24:03] 2025-11-25 00:23:25,696 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 01:24:03] 2025-11-25 00:23:25,696 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 01:24:03] 2025-11-25 00:23:25,696 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 01:24:03] 2025-11-25 00:23:25,696 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 01:24:03] 2025-11-25 00:23:25,696 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 01:24:03] 2025-11-25 00:23:25,696 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 01:24:03] 2025-11-25 00:23:25,696 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 01:24:03] 2025-11-25 00:23:25,697 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 01:24:03] 2025-11-25 00:23:25,697 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 01:24:03] 2025-11-25 00:23:25,697 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 01:24:03] 2025-11-25 00:23:25,697 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 01:24:03] 2025-11-25 00:23:25,697 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 01:24:03] 2025-11-25 00:23:25,697 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 01:24:03] 2025-11-25 00:23:25,697 | INFO     | job 6893840263 has completed (purged errors)
[2025-11-25 01:24:03] 2025-11-25 00:23:25,697 | INFO     | overall cleanup function is called
[2025-11-25 01:24:03] 2025-11-25 00:23:26,627 | INFO     | PID=9740 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-25 01:24:03] 2025-11-25 00:23:26,627 | INFO     | .. there are 2 such processes running
[2025-11-25 01:24:03] 2025-11-25 00:23:26,714 | INFO     | --- collectZombieJob: --- 10, [16345]
[2025-11-25 01:24:03] 2025-11-25 00:23:26,714 | INFO     | zombie collector waiting for pid 16345
[2025-11-25 01:24:03] 2025-11-25 00:23:26,715 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 01:24:03] 2025-11-25 00:23:26,715 | INFO     | collected zombie processes
[2025-11-25 01:24:03] 2025-11-25 00:23:26,715 | INFO     | will attempt to kill all subprocesses of pid=16345
[2025-11-25 01:24:03] 2025-11-25 00:23:26,797 | INFO     | process IDs to be killed: [16345] (in reverse order)
[2025-11-25 01:24:03] 2025-11-25 00:23:27,608 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 01:24:03] 2025-11-25 00:23:27,608 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 01:24:03] 2025-11-25 00:23:27,610 | INFO     | did not find any defunct processes belonging to 16345
[2025-11-25 01:24:03] 2025-11-25 00:23:27,612 | INFO     | did not find any defunct processes belonging to 16345
[2025-11-25 01:24:03] 2025-11-25 00:23:27,668 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 01:24:03] 2025-11-25 00:23:27,669 | INFO     | ready for new job
[2025-11-25 01:24:03] 2025-11-25 00:23:27,669 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 01:24:03] 2025-11-25 00:23:27,674 | INFO     | ***************************************
[2025-11-25 01:24:03] 2025-11-25 00:23:27,674 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 01:24:03] 2025-11-25 00:23:27,674 | INFO     | ***************************************
[2025-11-25 01:24:03] 2025-11-25 00:23:27,675 | INFO     | 
[2025-11-25 01:24:03] 2025-11-25 00:23:27,675 | INFO     | pilot is running in a VM
[2025-11-25 01:24:03] 2025-11-25 00:23:27,675 | INFO     | architecture information:
[2025-11-25 01:24:03] 2025-11-25 00:23:27,693 | INFO     | executing command: cat /etc/os-release
[2025-11-25 01:24:03] 2025-11-25 00:23:27,833 | INFO     | cat /etc/os-release:
[2025-11-25 01:24:03] NAME="CentOS Linux"
[2025-11-25 01:24:03] VERSION="7 (Core)"
[2025-11-25 01:24:03] ID="centos"
[2025-11-25 01:24:03] ID_LIKE="rhel fedora"
[2025-11-25 01:24:03] VERSION_ID="7"
[2025-11-25 01:24:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 01:24:03] ANSI_COLOR="0;31"
[2025-11-25 01:24:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 01:24:03] HOME_URL="https://www.centos.org/"
[2025-11-25 01:24:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 01:24:03] 
[2025-11-25 01:24:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 01:24:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 01:24:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 01:24:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 01:24:03] 
[2025-11-25 01:24:03] 2025-11-25 00:23:27,833 | INFO     | ***************************************
[2025-11-25 01:24:03] 2025-11-25 00:23:28,340 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-11-25 01:24:03] 2025-11-25 00:23:28,554 | INFO     | sufficient remaining disk space (493472448512 B)
[2025-11-25 01:24:03] 2025-11-25 00:23:28,554 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 01:24:03] 2025-11-25 00:23:28,554 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 01:24:03] 2025-11-25 00:23:28,554 | INFO     | update_server=False
[2025-11-25 01:24:03] 2025-11-25 00:23:28,555 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 01:24:03] 2025-11-25 00:23:28,811 | INFO     | all job control threads have been joined
[2025-11-25 01:24:03] 2025-11-25 00:23:28,939 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 01:24:03] 2025-11-25 00:23:29,275 | INFO     | all data control threads have been joined
[2025-11-25 01:24:03] 2025-11-25 00:23:29,553 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:24:03] 2025-11-25 00:23:29,553 | INFO     | aborting loop
[2025-11-25 01:24:03] 2025-11-25 00:23:29,560 | INFO     | [job] retrieve thread has finished
[2025-11-25 01:24:03] 2025-11-25 00:23:29,610 | INFO     | all payload control threads have been joined
[2025-11-25 01:24:03] 2025-11-25 00:23:29,748 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 01:24:03] 2025-11-25 00:23:29,817 | INFO     | [job] control thread has finished
[2025-11-25 01:24:03] 2025-11-25 00:23:29,821 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 01:24:03] 2025-11-25 00:23:29,839 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 01:24:03] 2025-11-25 00:23:30,009 | INFO     | [payload] validate_post thread has finished
[2025-11-25 01:24:03] 2025-11-25 00:23:30,129 | INFO     | [payload] failed_post thread has finished
[2025-11-25 01:24:03] 2025-11-25 00:23:30,281 | INFO     | [data] control thread has finished
[2025-11-25 01:24:03] 2025-11-25 00:23:30,329 | INFO     | [data] copytool_in thread has finished
[2025-11-25 01:24:03] 2025-11-25 00:23:30,338 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:24:03] 2025-11-25 00:23:30,405 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 01:24:03] 2025-11-25 00:23:30,440 | INFO     | [job] validate thread has finished
[2025-11-25 01:24:03] 2025-11-25 00:23:30,559 | INFO     | [job] job monitor thread has finished
[2025-11-25 01:24:03] 2025-11-25 00:23:30,615 | INFO     | [payload] control thread has finished
[2025-11-25 01:24:03] 2025-11-25 00:23:30,946 | INFO     | [data] copytool_out thread has finished
[2025-11-25 01:24:03] 2025-11-25 00:23:31,056 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 01:24:03] 2025-11-25 00:23:31,344 | INFO     | [job] queue monitor thread has finished
[2025-11-25 01:24:03] 2025-11-25 00:23:31,501 | INFO     | [monitor] cgroup control has ended
[2025-11-25 01:24:03] 2025-11-25 00:23:34,413 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 01:24:03] 2025-11-25 00:23:34,653 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139906113316672)>', '<ExcThread(monitor, started 139905405548288)>']
[2025-11-25 01:24:03] 2025-11-25 00:23:39,679 | INFO     | all workflow threads have been joined
[2025-11-25 01:24:03] 2025-11-25 00:23:39,679 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 01:24:03] 2025-11-25 00:23:39,680 | INFO     | traces error code: 0
[2025-11-25 01:24:03] 2025-11-25 00:23:39,680 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 01:24:03] 2025-11-25 00:23:58,753 | INFO     | PID=9740 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-25 01:24:03] 2025-11-25 00:23:58,754 | INFO     | .. there are 2 such processes running
[2025-11-25 01:24:03] 2025-11-25 00:23:58,754 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 01:24:03] 2025-11-25 00:23:58,754 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 01:24:03] 2025-11-25 00:23:58,755 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 01:24:03] 2025-11-25 00:23:58,755 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 01:24:03] 2025-11-25 00:23:58,755 | INFO     | [monitor] control thread has ended
[2025-11-25 01:24:03] 2025-11-25 00:23:58,978 [wrapper] ==== pilot stdout END ====
[2025-11-25 01:24:03] 2025-11-25 00:23:59,044 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 01:24:03] 2025-11-25 00:23:59,160 [wrapper] pilotpid: 9740
[2025-11-25 01:24:03] 2025-11-25 00:23:59,308 [wrapper] Pilot exit status: 0
[2025-11-25 01:24:03] 2025-11-25 00:23:59,749 [wrapper] pandaids: 6893840263
[2025-11-25 01:24:03] 2025-11-25 00:24:00,308 [wrapper] cleanup supervisor_pilot 30701 9741
[2025-11-25 01:24:03] 2025-11-25 00:24:00,390 [wrapper] Test setup, not cleaning
[2025-11-25 01:24:03] 2025-11-25 00:24:00,522 [wrapper] apfmon messages muted
[2025-11-25 01:24:03] 2025-11-25 00:24:00,588 [wrapper] ==== wrapper stdout END ====
[2025-11-25 01:24:03] 2025-11-25 00:24:00,700 [wrapper] ==== wrapper stderr END ====
[2025-11-25 01:24:03]  *** Error codes and diagnostics ***
[2025-11-25 01:24:03]     "exeErrorCode": 0,
[2025-11-25 01:24:03]     "exeErrorDiag": "",
[2025-11-25 01:24:03]     "pilotErrorCode": 0,
[2025-11-25 01:24:03]     "pilotErrorDiag": "",
[2025-11-25 01:24:03]  *** Listing of results directory ***
[2025-11-25 01:24:03] total 1333592
[2025-11-25 01:24:03] -rw-r--r--. 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-25 01:24:03] -rwx------. 1 boinc boinc     36292 Nov 20 11:19 runpilot2-wrapper.sh
[2025-11-25 01:24:03] -rw-r--r--. 1 boinc boinc      5112 Nov 20 11:21 queuedata.json
[2025-11-25 01:24:03] -rw-r--r--. 1 boinc boinc       100 Nov 24 04:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 01:24:03] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 04:14 run_atlas
[2025-11-25 01:24:03] -rw-r--r--. 1 boinc boinc       105 Nov 24 04:14 job.xml
[2025-11-25 01:24:03] -rw-r--r--. 2 boinc boinc 408440533 Nov 24 04:14 EVNT.47493127._000171.pool.root.1
[2025-11-25 01:24:03] -rw-r--r--. 1 boinc boinc      6391 Nov 24 04:14 init_data.xml
[2025-11-25 01:24:03] -rw-r--r--. 2 boinc boinc     15847 Nov 24 04:14 start_atlas.sh
[2025-11-25 01:24:03] drwxrwx--x. 2 boinc boinc        68 Nov 24 04:14 shared
[2025-11-25 01:24:03] -rw-r--r--. 2 boinc boinc    590096 Nov 24 04:14 input.tar.gz
[2025-11-25 01:24:03] -rw-r--r--. 1 boinc boinc         0 Nov 24 04:14 boinc_lockfile
[2025-11-25 01:24:03] -rw-r--r--. 1 boinc boinc      2786 Nov 24 04:14 pandaJob.out
[2025-11-25 01:24:03] -rw-------. 1 boinc boinc    989786 Nov 24 04:18 agis_schedconf.cvmfs.json
[2025-11-25 01:24:03] drwx------. 5 boinc boinc      4096 Nov 24 04:18 pilot3
[2025-11-25 01:24:03] -rw-r--r--. 1 boinc boinc       533 Nov 25 00:49 boinc_task_state.xml
[2025-11-25 01:24:03] -rw-------. 1 boinc boinc 928377106 Nov 25 01:20 HITS.47523449._001709.pool.root.1
[2025-11-25 01:24:03] -rw-------. 1 boinc boinc      1032 Nov 25 01:21 memory_monitor_summary.json
[2025-11-25 01:24:03] -rw-------. 1 boinc boinc   1516227 Nov 25 01:21 agis_ddmendpoints.agis.ALL.json
[2025-11-25 01:24:03] -rw-------. 1 boinc boinc   2359744 Nov 25 01:21 log.47523449._001709.job.log.tgz.1
[2025-11-25 01:24:03] -rw-------. 1 boinc boinc      8628 Nov 25 01:23 heartbeat.json
[2025-11-25 01:24:03] -rw-r--r--. 1 boinc boinc        29 Nov 25 01:23 wrapper_checkpoint.txt
[2025-11-25 01:24:03] -rw-r--r--. 1 boinc boinc      8192 Nov 25 01:23 boinc_mmap_file
[2025-11-25 01:24:03] -rw-------. 1 boinc boinc       819 Nov 25 01:23 pilotlog.txt
[2025-11-25 01:24:03] -rw-------. 1 boinc boinc        95 Nov 25 01:23 pilot_heartbeat.json
[2025-11-25 01:24:03] -rw-------. 1 boinc boinc  10082396 Nov 25 01:24 log.47523449._001709.job.log.1
[2025-11-25 01:24:03] -rw-------. 1 boinc boinc       353 Nov 25 01:24 output.list
[2025-11-25 01:24:03] -rw-r--r--. 1 boinc boinc       620 Nov 25 01:24 runtime_log
[2025-11-25 01:24:03] -rw-------. 1 boinc boinc  12462080 Nov 25 01:24 result.tar.gz
[2025-11-25 01:24:03] -rw-------. 1 boinc boinc       662 Nov 25 01:24 wEsLDmgwGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm3NGKDmjj2HRo.diag
[2025-11-25 01:24:03] -rw-r--r--. 1 boinc boinc      8833 Nov 25 01:24 runtime_log.err
[2025-11-25 01:24:03] -rw-r--r--. 1 boinc boinc     21501 Nov 25 01:24 stderr.txt
[2025-11-25 01:24:03] HITS file was successfully produced:
[2025-11-25 01:24:03] -rw-------. 1 boinc boinc 928377106 Nov 25 01:20 shared/HITS.pool.root.1
[2025-11-25 01:24:03]  *** Contents of shared directory: ***
[2025-11-25 01:24:03] total 1318256
[2025-11-25 01:24:03] -rw-r--r--. 2 boinc boinc 408440533 Nov 24 04:14 ATLAS.root_0
[2025-11-25 01:24:03] -rw-r--r--. 2 boinc boinc     15847 Nov 24 04:14 start_atlas.sh
[2025-11-25 01:24:03] -rw-r--r--. 2 boinc boinc    590096 Nov 24 04:14 input.tar.gz
[2025-11-25 01:24:03] -rw-------. 1 boinc boinc 928377106 Nov 25 01:20 HITS.pool.root.1
[2025-11-25 01:24:03] -rw-------. 1 boinc boinc  12462080 Nov 25 01:24 result.tar.gz
01:24:05 (5970): run_atlas exited; CPU time 342514.661725
01:24:05 (5970): called boinc_finish(0)

</stderr_txt>
]]>

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