Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:23:29 (2686714): wrapper (7.7.26015): starting
21:23:29 (2686714): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 21:23:29] Arguments: --nthreads 4
[2025-11-21 21:23:29] Threads: 4
[2025-11-21 21:23:29] Checking for CVMFS
[2025-11-21 21:23:29] No cvmfs_config command found, will try listing directly
[2025-11-21 21:23:29] CVMFS is ok
[2025-11-21 21:23:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 21:23:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 21:23:29] Further information can be found at the LHC@home message board.
[2025-11-21 21:23:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 21:23:29] Checking for apptainer binary...
[2025-11-21 21:23:29] which: no apptainer in ((null))
[2025-11-21 21:23:29] apptainer is not installed, using version from CVMFS
[2025-11-21 21:23:29] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 21:23:29] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot128/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-11-21 21:23:29] apptainer works
[2025-11-21 21:23:29] Set ATHENA_PROC_NUMBER=4
[2025-11-21 21:23:29] Set ATHENA_CORE_NUMBER=4
[2025-11-21 21:23:29] Starting ATLAS job with PandaID=6893870204
[2025-11-21 21:23:29] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot128/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 13:02:24]  *** The last 200 lines of the pilot log: ***
[2025-11-22 13:02:24] 2025-11-22 11:58:23,468 | INFO     | monitor loop #3784: job 0:6893870204 is in state 'finished'
[2025-11-22 13:02:24] 2025-11-22 11:58:23,468 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 13:02:24] 2025-11-22 11:58:24,099 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 13:02:24] 2025-11-22 11:58:24,112 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2729.7303984375
[2025-11-22 13:02:24] 2025-11-22 11:58:24,128 | INFO     | using path: /scratch/boinc/var/slot128/slots/0/PanDA_Pilot-6893870204/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 13:02:24] 2025-11-22 11:58:24,129 | INFO     | extracted standard info from prmon json
[2025-11-22 13:02:24] 2025-11-22 11:58:24,129 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 13:02:24] 2025-11-22 11:58:24,129 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 13:02:24] 2025-11-22 11:58:24,139 | INFO     | fitting pss+swap vs Time
[2025-11-22 13:02:24] 2025-11-22 11:58:24,140 | INFO     | sum of square deviations: 240671377620.0
[2025-11-22 13:02:24] 2025-11-22 11:58:24,150 | INFO     | sum of deviations: 810970845220.0
[2025-11-22 13:02:24] 2025-11-22 11:58:24,150 | INFO     | mean x: 1763784658.0
[2025-11-22 13:02:24] 2025-11-22 11:58:24,150 | INFO     | mean y: 2291540.5125136017
[2025-11-22 13:02:24] 2025-11-22 11:58:24,150 | INFO     | intersect: -5940990743.526995
[2025-11-22 13:02:24] 2025-11-22 11:58:24,151 | INFO     | chi2: 3.7284716622444543
[2025-11-22 13:02:24] 2025-11-22 11:58:24,152 | INFO     | sum of square deviations: 236764448552.5
[2025-11-22 13:02:24] 2025-11-22 11:58:24,162 | INFO     | sum of deviations: 974726192510.0
[2025-11-22 13:02:24] 2025-11-22 11:58:24,162 | INFO     | mean x: 1763784505.5
[2025-11-22 13:02:24] 2025-11-22 11:58:24,162 | INFO     | mean y: 2297924.5295404815
[2025-11-22 13:02:24] 2025-11-22 11:58:24,162 | INFO     | intersect: -7258956735.808252
[2025-11-22 13:02:24] 2025-11-22 11:58:24,162 | INFO     | chi2: 1.948966545006246
[2025-11-22 13:02:24] 2025-11-22 11:58:24,163 | INFO     | current chi2=1.948966545006246 (change=47.72746793969159 %)
[2025-11-22 13:02:24] 2025-11-22 11:58:24,163 | INFO     | sum of square deviations: 232900031910.0
[2025-11-22 13:02:24] 2025-11-22 11:58:24,173 | INFO     | sum of deviations: 973165768284.9999
[2025-11-22 13:02:24] 2025-11-22 11:58:24,173 | INFO     | mean x: 1763784353.0
[2025-11-22 13:02:24] 2025-11-22 11:58:24,174 | INFO     | mean y: 2297860.9570957096
[2025-11-22 13:02:24] 2025-11-22 11:58:24,174 | INFO     | intersect: -7367621932.096428
[2025-11-22 13:02:24] 2025-11-22 11:58:24,174 | INFO     | chi2: 1.9181152770463417
[2025-11-22 13:02:24] 2025-11-22 11:58:24,174 | INFO     | current chi2=1.9181152770463417 (change=1.5829552353760685 %)
[2025-11-22 13:02:24] 2025-11-22 11:58:24,174 | INFO     | right removable region: 908
[2025-11-22 13:02:24] 2025-11-22 11:58:24,175 | INFO     | sum of square deviations: 236764448552.5
[2025-11-22 13:02:24] 2025-11-22 11:58:24,185 | INFO     | sum of deviations: 645023969229.9999
[2025-11-22 13:02:24] 2025-11-22 11:58:24,185 | INFO     | mean x: 1763784810.5
[2025-11-22 13:02:24] 2025-11-22 11:58:24,185 | INFO     | mean y: 2298005.466083151
[2025-11-22 13:02:24] 2025-11-22 11:58:24,185 | INFO     | intersect: -4802829986.898125
[2025-11-22 13:02:24] 2025-11-22 11:58:24,186 | INFO     | chi2: 1.9098239157472823
[2025-11-22 13:02:24] 2025-11-22 11:58:24,186 | INFO     | current chi2=1.9098239157472823 (change=48.77729834755906 %)
[2025-11-22 13:02:24] 2025-11-22 11:58:24,187 | INFO     | sum of square deviations: 232900031910.0
[2025-11-22 13:02:24] 2025-11-22 11:58:24,196 | INFO     | sum of deviations: 633588851584.9998
[2025-11-22 13:02:24] 2025-11-22 11:58:24,197 | INFO     | mean x: 1763784963.0
[2025-11-22 13:02:24] 2025-11-22 11:58:24,197 | INFO     | mean y: 2298456.2849284927
[2025-11-22 13:02:24] 2025-11-22 11:58:24,197 | INFO     | intersect: -4795959749.114994
[2025-11-22 13:02:24] 2025-11-22 11:58:24,197 | INFO     | chi2: 1.9091451227476983
[2025-11-22 13:02:24] 2025-11-22 11:58:24,197 | INFO     | current chi2=1.9091451227476983 (change=0.03554217716026215 %)
[2025-11-22 13:02:24] 2025-11-22 11:58:24,197 | INFO     | left removable region: 20
[2025-11-22 13:02:24] 2025-11-22 11:58:24,198 | INFO     | sum of square deviations: 217128469222.0
[2025-11-22 13:02:24] 2025-11-22 11:58:24,207 | INFO     | sum of deviations: 786364158096.4999
[2025-11-22 13:02:24] 2025-11-22 11:58:24,208 | INFO     | mean x: 1763784932.5
[2025-11-22 13:02:24] 2025-11-22 11:58:24,208 | INFO     | mean y: 2305121.082207207
[2025-11-22 13:02:24] 2025-11-22 11:58:24,208 | INFO     | intersect: -6385513383.22714
[2025-11-22 13:02:24] 2025-11-22 11:58:24,208 | INFO     | chi2: 0.07699910252190567
[2025-11-22 13:02:24] 2025-11-22 11:58:24,208 | INFO     | current memory leak: 3.62 B/s (using 888 data points, chi2=0.08)
[2025-11-22 13:02:24] 2025-11-22 11:58:24,209 | INFO     | could have reported an average CPU frequency of 2683 MHz (34 samples)
[2025-11-22 13:02:24] 2025-11-22 11:58:24,209 | INFO     | ..............................
[2025-11-22 13:02:24] 2025-11-22 11:58:24,209 | INFO     | . Timing measurements:
[2025-11-22 13:02:24] 2025-11-22 11:58:24,209 | INFO     | . get job = 0 s
[2025-11-22 13:02:24] 2025-11-22 11:58:24,209 | INFO     | . initial setup = 1 s
[2025-11-22 13:02:24] 2025-11-22 11:58:24,209 | INFO     | . payload setup = 9 s
[2025-11-22 13:02:24] 2025-11-22 11:58:24,209 | INFO     | . stage-in = 0 s
[2025-11-22 13:02:24] 2025-11-22 11:58:24,209 | INFO     | . payload execution = 56036 s
[2025-11-22 13:02:24] 2025-11-22 11:58:24,209 | INFO     | . stage-out = 2 s
[2025-11-22 13:02:24] 2025-11-22 11:58:24,209 | INFO     | . log creation = 0 s
[2025-11-22 13:02:24] 2025-11-22 11:58:24,209 | INFO     | ..............................
[2025-11-22 13:02:24] 2025-11-22 11:58:24,438 | INFO     | time since job start (56081s) is within the limit (172800.0s)
[2025-11-22 13:02:24] 2025-11-22 11:58:24,734 | INFO     | 
[2025-11-22 13:02:24] 2025-11-22 11:58:24,734 | INFO     | job summary report
[2025-11-22 13:02:24] 2025-11-22 11:58:24,734 | INFO     | --------------------------------------------------
[2025-11-22 13:02:24] 2025-11-22 11:58:24,734 | INFO     | PanDA job id: 6893870204
[2025-11-22 13:02:24] 2025-11-22 11:58:24,734 | INFO     | task id: 47523449
[2025-11-22 13:02:24] 2025-11-22 11:58:24,735 | INFO     | errors: (none)
[2025-11-22 13:02:24] 2025-11-22 11:58:24,735 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 13:02:24] 2025-11-22 11:58:24,735 | INFO     | pilot state: finished 
[2025-11-22 13:02:24] 2025-11-22 11:58:24,735 | INFO     | transexitcode: 0
[2025-11-22 13:02:24] 2025-11-22 11:58:24,735 | INFO     | exeerrorcode: 0
[2025-11-22 13:02:24] 2025-11-22 11:58:24,735 | INFO     | exeerrordiag: 
[2025-11-22 13:02:24] 2025-11-22 11:58:24,735 | INFO     | exitcode: 0
[2025-11-22 13:02:24] 2025-11-22 11:58:24,735 | INFO     | exitmsg: OK
[2025-11-22 13:02:24] 2025-11-22 11:58:24,735 | INFO     | cpuconsumptiontime: 221892 s
[2025-11-22 13:02:24] 2025-11-22 11:58:24,735 | INFO     | nevents: 1000
[2025-11-22 13:02:24] 2025-11-22 11:58:24,735 | INFO     | neventsw: 0
[2025-11-22 13:02:24] 2025-11-22 11:58:24,735 | INFO     | pid: 2700542
[2025-11-22 13:02:24] 2025-11-22 11:58:24,736 | INFO     | pgrp: 2700542
[2025-11-22 13:02:24] 2025-11-22 11:58:24,736 | INFO     | corecount: 4
[2025-11-22 13:02:24] 2025-11-22 11:58:24,736 | INFO     | event service: False
[2025-11-22 13:02:24] 2025-11-22 11:58:24,736 | INFO     | sizes: {0: 2298596, 1: 2298795, 8: 2299057, 12: 2299085, 56049: 2352073, 56053: 2361091, 56054: 2361275, 56063: 2361521}
[2025-11-22 13:02:24] 2025-11-22 11:58:24,736 | INFO     | --------------------------------------------------
[2025-11-22 13:02:24] 2025-11-22 11:58:24,736 | INFO     | 
[2025-11-22 13:02:24] 2025-11-22 11:58:24,736 | INFO     | executing command: ls -lF /scratch/boinc/var/slot128/slots/0
[2025-11-22 13:02:24] 2025-11-22 11:58:24,765 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 13:02:24] 2025-11-22 11:58:24,765 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 13:02:24] 2025-11-22 11:58:24,765 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 13:02:24] 2025-11-22 11:58:24,765 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 13:02:24] 2025-11-22 11:58:24,765 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 13:02:24] 2025-11-22 11:58:24,765 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 13:02:24] 2025-11-22 11:58:24,765 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 13:02:24] 2025-11-22 11:58:24,765 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 13:02:24] 2025-11-22 11:58:24,766 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 13:02:24] 2025-11-22 11:58:24,766 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 13:02:24] 2025-11-22 11:58:24,766 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 13:02:24] 2025-11-22 11:58:24,766 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 13:02:24] 2025-11-22 11:58:24,766 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 13:02:24] 2025-11-22 11:58:24,766 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 13:02:24] 2025-11-22 11:58:24,766 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 13:02:24] 2025-11-22 11:58:24,766 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 13:02:24] 2025-11-22 11:58:24,766 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 13:02:24] 2025-11-22 11:58:24,766 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 13:02:24] 2025-11-22 11:58:24,767 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 13:02:24] 2025-11-22 11:58:24,767 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 13:02:24] 2025-11-22 11:58:24,767 | INFO     | job 6893870204 has completed (purged errors)
[2025-11-22 13:02:24] 2025-11-22 11:58:24,767 | INFO     | overall cleanup function is called
[2025-11-22 13:02:24] 2025-11-22 11:58:25,782 | INFO     | --- collectZombieJob: --- 10, [2700542]
[2025-11-22 13:02:24] 2025-11-22 11:58:25,783 | INFO     | zombie collector waiting for pid 2700542
[2025-11-22 13:02:24] 2025-11-22 11:58:25,783 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 13:02:24] 2025-11-22 11:58:25,783 | INFO     | collected zombie processes
[2025-11-22 13:02:24] 2025-11-22 11:58:25,783 | INFO     | will attempt to kill all subprocesses of pid=2700542
[2025-11-22 13:02:24] 2025-11-22 11:58:26,443 | INFO     | process IDs to be killed: [2700542] (in reverse order)
[2025-11-22 13:02:24] 2025-11-22 11:58:26,692 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 13:02:24] 2025-11-22 11:58:26,693 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 13:02:24] 2025-11-22 11:58:26,726 | INFO     | did not find any defunct processes belonging to 2700542
[2025-11-22 13:02:24] 2025-11-22 11:58:26,759 | INFO     | did not find any defunct processes belonging to 2700542
[2025-11-22 13:02:24] 2025-11-22 11:58:26,761 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 13:02:24] 2025-11-22 11:58:26,761 | INFO     | ready for new job
[2025-11-22 13:02:24] 2025-11-22 11:58:26,761 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 13:02:24] 2025-11-22 11:58:26,769 | INFO     | ***************************************
[2025-11-22 13:02:24] 2025-11-22 11:58:26,769 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 13:02:24] 2025-11-22 11:58:26,769 | INFO     | ***************************************
[2025-11-22 13:02:24] 2025-11-22 11:58:26,769 | INFO     | 
[2025-11-22 13:02:24] 2025-11-22 11:58:26,777 | INFO     | architecture information:
[2025-11-22 13:02:24] 2025-11-22 11:58:26,778 | INFO     | executing command: cat /etc/os-release
[2025-11-22 13:02:24] 2025-11-22 11:58:26,802 | INFO     | cat /etc/os-release:
[2025-11-22 13:02:24] NAME="CentOS Linux"
[2025-11-22 13:02:24] VERSION="7 (Core)"
[2025-11-22 13:02:24] ID="centos"
[2025-11-22 13:02:24] ID_LIKE="rhel fedora"
[2025-11-22 13:02:24] VERSION_ID="7"
[2025-11-22 13:02:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 13:02:24] ANSI_COLOR="0;31"
[2025-11-22 13:02:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 13:02:24] HOME_URL="https://www.centos.org/"
[2025-11-22 13:02:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 13:02:24] 
[2025-11-22 13:02:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 13:02:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 13:02:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 13:02:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 13:02:24] 
[2025-11-22 13:02:24] 2025-11-22 11:58:26,802 | INFO     | ***************************************
[2025-11-22 13:02:24] 2025-11-22 11:58:27,305 | INFO     | executing command: df -mP /scratch/boinc/var/slot128/slots/0
[2025-11-22 13:02:24] 2025-11-22 11:58:27,326 | INFO     | sufficient remaining disk space (3298637643776 B)
[2025-11-22 13:02:24] 2025-11-22 11:58:27,326 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 13:02:24] 2025-11-22 11:58:27,326 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 13:02:24] 2025-11-22 11:58:27,326 | INFO     | update_server=False
[2025-11-22 13:02:24] 2025-11-22 11:58:27,327 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 13:02:24] 2025-11-22 11:58:27,327 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 13:02:24] 2025-11-22 11:58:27,327 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 13:02:24] 2025-11-22 11:58:27,328 | INFO     | aborting loop
[2025-11-22 13:02:24] 2025-11-22 11:58:27,791 | INFO     | all payload control threads have been joined
[2025-11-22 13:02:24] 2025-11-22 11:58:28,170 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 13:02:24] 2025-11-22 11:58:28,332 | INFO     | [job] retrieve thread has finished
[2025-11-22 13:02:24] 2025-11-22 11:58:28,333 | INFO     | [job] job monitor thread has finished
[2025-11-22 13:02:24] 2025-11-22 11:58:28,392 | INFO     | all data control threads have been joined
[2025-11-22 13:02:24] 2025-11-22 11:58:28,687 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 13:02:24] 2025-11-22 11:58:28,717 | INFO     | [data] copytool_in thread has finished
[2025-11-22 13:02:24] 2025-11-22 11:58:28,795 | INFO     | all job control threads have been joined
[2025-11-22 13:02:24] 2025-11-22 11:58:28,796 | INFO     | [payload] control thread has finished
[2025-11-22 13:02:24] 2025-11-22 11:58:28,936 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 13:02:24] 2025-11-22 11:58:29,037 | INFO     | [payload] failed_post thread has finished
[2025-11-22 13:02:24] 2025-11-22 11:58:29,075 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 13:02:24] 2025-11-22 11:58:29,161 | INFO     | [job] validate thread has finished
[2025-11-22 13:02:24] 2025-11-22 11:58:29,290 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 13:02:24] 2025-11-22 11:58:29,398 | INFO     | [data] control thread has finished
[2025-11-22 13:02:24] 2025-11-22 11:58:29,799 | INFO     | [job] control thread has finished
[2025-11-22 13:02:24] 2025-11-22 11:58:29,822 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 13:02:24] 2025-11-22 11:58:29,892 | INFO     | [payload] validate_post thread has finished
[2025-11-22 13:02:24] 2025-11-22 11:58:30,175 | INFO     | [data] copytool_out thread has finished
[2025-11-22 13:02:24] 2025-11-22 11:58:30,294 | INFO     | [job] queue monitor thread has finished
[2025-11-22 13:02:24] 2025-11-22 11:58:31,334 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 13:02:24] 2025-11-22 11:58:58,311 | INFO     | PID=2690798 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 13:02:24] 2025-11-22 11:58:58,314 | INFO     | .. there are 7 such processes running
[2025-11-22 13:02:24] 2025-11-22 11:58:58,315 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 13:02:24] 2025-11-22 11:58:58,315 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 13:02:24] 2025-11-22 11:58:58,315 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 13:02:24] 2025-11-22 11:59:15,009 | INFO     | [monitor] cgroup control has ended
[2025-11-22 13:02:24] 2025-11-22 11:59:16,419 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22638980454208)>', '<ExcThread(monitor, started 22638741124864)>']
[2025-11-22 13:02:24] 2025-11-22 11:59:17,410 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 13:02:24] 2025-11-22 11:59:17,411 | INFO     | [monitor] control thread has ended
[2025-11-22 13:02:24] 2025-11-22 11:59:21,443 | INFO     | all workflow threads have been joined
[2025-11-22 13:02:24] 2025-11-22 11:59:21,444 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 13:02:24] 2025-11-22 11:59:21,444 | INFO     | traces error code: 0
[2025-11-22 13:02:24] 2025-11-22 11:59:21,444 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 13:02:24] 2025-11-22 11:59:21,654 [wrapper] ==== pilot stdout END ====
[2025-11-22 13:02:24] 2025-11-22 11:59:21,658 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 13:02:24] 2025-11-22 11:59:21,661 [wrapper] pilotpid: 2690798
[2025-11-22 13:02:24] 2025-11-22 11:59:21,665 [wrapper] Pilot exit status: 0
[2025-11-22 13:02:24] 2025-11-22 11:59:21,676 [wrapper] pandaids: 6893870204
[2025-11-22 13:02:24] 2025-11-22 11:59:21,849 [wrapper] cleanup supervisor_pilot 3996455 2690799
[2025-11-22 13:02:24] 2025-11-22 11:59:21,854 [wrapper] Test setup, not cleaning
[2025-11-22 13:02:24] 2025-11-22 11:59:21,858 [wrapper] apfmon messages muted
[2025-11-22 13:02:24] 2025-11-22 11:59:21,862 [wrapper] ==== wrapper stdout END ====
[2025-11-22 13:02:24] 2025-11-22 11:59:21,866 [wrapper] ==== wrapper stderr END ====
[2025-11-22 13:02:24]  *** Error codes and diagnostics ***
[2025-11-22 13:02:24]     "exeErrorCode": 0,
[2025-11-22 13:02:24]     "exeErrorDiag": "",
[2025-11-22 13:02:24]     "pilotErrorCode": 0,
[2025-11-22 13:02:24]     "pilotErrorDiag": "",
[2025-11-22 13:02:24]  *** Listing of results directory ***
[2025-11-22 13:02:24] total 1319668
[2025-11-22 13:02:24] -rw-r--r-- 1 boinc boinc    576529 Nov 20 15:50 pilot3.tar.gz
[2025-11-22 13:02:24] -rwx------ 1 boinc boinc     36292 Nov 20 15:52 runpilot2-wrapper.sh
[2025-11-22 13:02:24] -rw-r--r-- 1 boinc boinc      5112 Nov 20 15:52 queuedata.json
[2025-11-22 13:02:24] -rw-r--r-- 1 boinc boinc       100 Nov 21 21:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 13:02:24] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 21:23 run_atlas
[2025-11-22 13:02:24] -rw-r--r-- 1 boinc boinc       105 Nov 21 21:23 job.xml
[2025-11-22 13:02:24] -rw-r--r-- 1 boinc boinc      6686 Nov 21 21:23 init_data.xml
[2025-11-22 13:02:24] -rw-r--r-- 2 boinc boinc 409265979 Nov 21 21:23 EVNT.47493127._000649.pool.root.1
[2025-11-22 13:02:24] -rw-r--r-- 2 boinc boinc     15847 Nov 21 21:23 start_atlas.sh
[2025-11-22 13:02:24] drwxrwx--x 2 boinc boinc      4096 Nov 21 21:23 shared
[2025-11-22 13:02:24] -rw-r--r-- 2 boinc boinc    590095 Nov 21 21:23 input.tar.gz
[2025-11-22 13:02:24] -rw-r--r-- 1 boinc boinc         0 Nov 21 21:23 boinc_lockfile
[2025-11-22 13:02:24] -rw-r--r-- 1 boinc boinc      2784 Nov 21 21:23 pandaJob.out
[2025-11-22 13:02:24] -rw------- 1 boinc boinc    989798 Nov 21 21:23 agis_schedconf.cvmfs.json
[2025-11-22 13:02:24] drwx------ 5 boinc boinc      4096 Nov 21 21:23 pilot3
[2025-11-22 13:02:24] -rw-r--r-- 1 boinc boinc       532 Nov 22 12:51 boinc_task_state.xml
[2025-11-22 13:02:24] -rw------- 1 boinc boinc 919361726 Nov 22 12:57 HITS.47523449._006487.pool.root.1
[2025-11-22 13:02:24] -rw------- 1 boinc boinc      1039 Nov 22 12:58 memory_monitor_summary.json
[2025-11-22 13:02:24] -rw------- 1 boinc boinc   1526164 Nov 22 12:58 agis_ddmendpoints.agis.ALL.json
[2025-11-22 13:02:24] -rw------- 1 boinc boinc   1668972 Nov 22 12:58 log.47523449._006487.job.log.tgz.1
[2025-11-22 13:02:24] -rw------- 1 boinc boinc      8592 Nov 22 12:58 heartbeat.json
[2025-11-22 13:02:24] -rw------- 1 boinc boinc        95 Nov 22 12:58 pilot_heartbeat.json
[2025-11-22 13:02:24] -rw------- 1 boinc boinc      4835 Nov 22 12:59 pilotlog.txt
[2025-11-22 13:02:24] -rw------- 1 boinc boinc   7726466 Nov 22 12:59 log.47523449._006487.job.log.1
[2025-11-22 13:02:24] -rw------- 1 boinc boinc       353 Nov 22 12:59 output.list
[2025-11-22 13:02:24] -rw-r--r-- 1 boinc boinc       620 Nov 22 12:59 runtime_log
[2025-11-22 13:02:24] -rw------- 1 boinc boinc   9410560 Nov 22 12:59 result.tar.gz
[2025-11-22 13:02:24] -rw-r--r-- 1 boinc boinc      9223 Nov 22 12:59 runtime_log.err
[2025-11-22 13:02:24] -rw------- 1 boinc boinc       670 Nov 22 12:59 9uJNDmWCLg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDml9HKDms7uAEo.diag
[2025-11-22 13:02:24] -rw-r--r-- 1 boinc boinc        28 Nov 22 13:02 wrapper_checkpoint.txt
[2025-11-22 13:02:24] -rw-r--r-- 1 boinc boinc      8192 Nov 22 13:02 boinc_mmap_file
[2025-11-22 13:02:24] -rw-r--r-- 1 boinc boinc     21065 Nov 22 13:02 stderr.txt
[2025-11-22 13:02:24] HITS file was successfully produced:
[2025-11-22 13:02:24] -rw------- 1 boinc boinc 919361726 Nov 22 12:57 shared/HITS.pool.root.1
[2025-11-22 13:02:24]  *** Contents of shared directory: ***
[2025-11-22 13:02:24] total 1307288
[2025-11-22 13:02:24] -rw-r--r-- 2 boinc boinc 409265979 Nov 21 21:23 ATLAS.root_0
[2025-11-22 13:02:24] -rw-r--r-- 2 boinc boinc     15847 Nov 21 21:23 start_atlas.sh
[2025-11-22 13:02:24] -rw-r--r-- 2 boinc boinc    590095 Nov 21 21:23 input.tar.gz
[2025-11-22 13:02:24] -rw------- 1 boinc boinc 919361726 Nov 22 12:57 HITS.pool.root.1
[2025-11-22 13:02:24] -rw------- 1 boinc boinc   9410560 Nov 22 12:59 result.tar.gz
13:02:25 (2686714): run_atlas exited; CPU time 224841.064505
13:02:25 (2686714): called boinc_finish(0)

</stderr_txt>
]]>

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