Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:57:15 (1564587): wrapper (7.7.26015): starting
20:57:15 (1564587): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 20:57:15] Arguments: --nthreads 8
[2025-11-20 20:57:15] Threads: 8
[2025-11-20 20:57:15] Checking for CVMFS
[2025-11-20 20:57:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 20:57:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 20:57:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 20:57:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 20:57:16] 2.13.2.0 4057 25070 169704 153103 1 91 26895852 39288833 6221 16776704 0 14424221 99.558 13143443 34699 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 20:57:16] CVMFS is ok
[2025-11-20 20:57:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 20:57:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 20:57:16] Further information can be found at the LHC@home message board.
[2025-11-20 20:57:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 20:57:16] Checking for apptainer binary...
[2025-11-20 20:57:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 20:57:16] Running /usr/bin/apptainer --version
[2025-11-20 20:57:17] apptainer version 1.4.4-1.el9
[2025-11-20 20:57:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 20:57:17] c-210-24.aglt2.org
[2025-11-20 20:57:17] apptainer works
[2025-11-20 20:57:18] Set ATHENA_PROC_NUMBER=8
[2025-11-20 20:57:18] Set ATHENA_CORE_NUMBER=8
[2025-11-20 20:57:18] Starting ATLAS job with PandaID=6893872235
[2025-11-20 20:57:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 08:48:17]  *** The last 200 lines of the pilot log: ***
[2025-11-21 08:48:17] 2025-11-21 13:47:42,957 | INFO     | monitor loop #3122: job 0:6893872235 is in state 'finished'
[2025-11-21 08:48:17] 2025-11-21 13:47:42,958 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 08:48:17] 2025-11-21 13:47:43,390 | INFO     | time since job start (42588s) is within the limit (172800.0s)
[2025-11-21 08:48:17] 2025-11-21 13:47:43,659 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 08:48:17] 2025-11-21 13:47:43,666 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.0553000000004
[2025-11-21 08:48:17] 2025-11-21 13:47:43,671 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893872235/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 08:48:17] 2025-11-21 13:47:43,671 | INFO     | extracted standard info from prmon json
[2025-11-21 08:48:17] 2025-11-21 13:47:43,671 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 08:48:17] 2025-11-21 13:47:43,671 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 08:48:17] 2025-11-21 13:47:43,684 | INFO     | fitting pss+swap vs Time
[2025-11-21 08:48:17] 2025-11-21 13:47:43,685 | INFO     | sum of square deviations: 104993963743.52351
[2025-11-21 08:48:17] 2025-11-21 13:47:43,697 | INFO     | sum of deviations: 1095866767268.1097
[2025-11-21 08:48:17] 2025-11-21 13:47:43,697 | INFO     | mean x: 1763711579.296987
[2025-11-21 08:48:17] 2025-11-21 13:47:43,697 | INFO     | mean y: 2873716.385939742
[2025-11-21 08:48:17] 2025-11-21 13:47:43,698 | INFO     | intersect: -18405736053.970924
[2025-11-21 08:48:17] 2025-11-21 13:47:43,698 | INFO     | chi2: 8.708940078972983
[2025-11-21 08:48:17] 2025-11-21 13:47:43,699 | INFO     | sum of square deviations: 102750580163.07933
[2025-11-21 08:48:17] 2025-11-21 13:47:43,710 | INFO     | sum of deviations: 1337055428618.454
[2025-11-21 08:48:17] 2025-11-21 13:47:43,710 | INFO     | mean x: 1763711426.799133
[2025-11-21 08:48:17] 2025-11-21 13:47:43,710 | INFO     | mean y: 2890117.0895953756
[2025-11-21 08:48:17] 2025-11-21 13:47:43,710 | INFO     | intersect: -22947636624.223434
[2025-11-21 08:48:17] 2025-11-21 13:47:43,711 | INFO     | chi2: 5.309745974268141
[2025-11-21 08:48:17] 2025-11-21 13:47:43,711 | INFO     | current chi2=5.309745974268141 (change=39.03108844337918 %)
[2025-11-21 08:48:17] 2025-11-21 13:47:43,712 | INFO     | sum of square deviations: 100539383232.62854
[2025-11-21 08:48:17] 2025-11-21 13:47:43,723 | INFO     | sum of deviations: 1456264917343.7961
[2025-11-21 08:48:17] 2025-11-21 13:47:43,723 | INFO     | mean x: 1763711274.30131
[2025-11-21 08:48:17] 2025-11-21 13:47:43,724 | INFO     | mean y: 2898338.672489083
[2025-11-21 08:48:17] 2025-11-21 13:47:43,724 | INFO     | intersect: -25543616574.253426
[2025-11-21 08:48:17] 2025-11-21 13:47:43,725 | INFO     | chi2: 4.300669155342366
[2025-11-21 08:48:17] 2025-11-21 13:47:43,725 | INFO     | current chi2=4.300669155342366 (change=19.00423906936263 %)
[2025-11-21 08:48:17] 2025-11-21 13:47:43,725 | INFO     | right removable region: 686
[2025-11-21 08:48:17] 2025-11-21 13:47:43,725 | INFO     | sum of square deviations: 102750453893.07933
[2025-11-21 08:48:17] 2025-11-21 13:47:43,736 | INFO     | sum of deviations: 857794961079.987
[2025-11-21 08:48:17] 2025-11-21 13:47:43,737 | INFO     | mean x: 1763711731.799133
[2025-11-21 08:48:17] 2025-11-21 13:47:43,737 | INFO     | mean y: 2889889.309248555
[2025-11-21 08:48:17] 2025-11-21 13:47:43,737 | INFO     | intersect: -14721162209.85967
[2025-11-21 08:48:17] 2025-11-21 13:47:43,737 | INFO     | chi2: 5.739868218423762
[2025-11-21 08:48:17] 2025-11-21 13:47:43,738 | INFO     | current chi2=5.739868218423762 (change=34.09222975041245 %)
[2025-11-21 08:48:17] 2025-11-21 13:47:43,738 | INFO     | sum of square deviations: 100539172660.22992
[2025-11-21 08:48:17] 2025-11-21 13:47:43,748 | INFO     | sum of deviations: 771041681655.6345
[2025-11-21 08:48:17] 2025-11-21 13:47:43,748 | INFO     | mean x: 1763711884.2998545
[2025-11-21 08:48:17] 2025-11-21 13:47:43,748 | INFO     | mean y: 2895859.3318777294
[2025-11-21 08:48:17] 2025-11-21 13:47:43,748 | INFO     | intersect: -13523129283.348839
[2025-11-21 08:48:17] 2025-11-21 13:47:43,749 | INFO     | chi2: 5.327816980822633
[2025-11-21 08:48:17] 2025-11-21 13:47:43,749 | INFO     | current chi2=5.327816980822633 (change=7.178757802810379 %)
[2025-11-21 08:48:17] 2025-11-21 13:47:43,749 | INFO     | left removable region: 20
[2025-11-21 08:48:17] 2025-11-21 13:47:43,750 | INFO     | sum of square deviations: 91598453315.63513
[2025-11-21 08:48:17] 2025-11-21 13:47:43,760 | INFO     | sum of deviations: 1087931306212.2559
[2025-11-21 08:48:17] 2025-11-21 13:47:43,760 | INFO     | mean x: 1763711853.7972972
[2025-11-21 08:48:17] 2025-11-21 13:47:43,760 | INFO     | mean y: 2927760.142642643
[2025-11-21 08:48:17] 2025-11-21 13:47:43,760 | INFO     | intersect: -20944995173.35747
[2025-11-21 08:48:17] 2025-11-21 13:47:43,761 | INFO     | chi2: 0.6564875159879292
[2025-11-21 08:48:17] 2025-11-21 13:47:43,761 | INFO     | current memory leak: 11.88 B/s (using 666 data points, chi2=0.66)
[2025-11-21 08:48:17] 2025-11-21 13:47:43,762 | INFO     | could have reported an average CPU frequency of 2600 MHz (27 samples)
[2025-11-21 08:48:17] 2025-11-21 13:47:43,762 | INFO     | ..............................
[2025-11-21 08:48:17] 2025-11-21 13:47:43,762 | INFO     | . Timing measurements:
[2025-11-21 08:48:17] 2025-11-21 13:47:43,763 | INFO     | . get job = 0 s
[2025-11-21 08:48:17] 2025-11-21 13:47:43,763 | INFO     | . initial setup = 4 s
[2025-11-21 08:48:17] 2025-11-21 13:47:43,763 | INFO     | . payload setup = 20 s
[2025-11-21 08:48:17] 2025-11-21 13:47:43,763 | INFO     | . stage-in = 0 s
[2025-11-21 08:48:17] 2025-11-21 13:47:43,763 | INFO     | . payload execution = 42510 s
[2025-11-21 08:48:17] 2025-11-21 13:47:43,763 | INFO     | . stage-out = 3 s
[2025-11-21 08:48:17] 2025-11-21 13:47:43,763 | INFO     | . log creation = 0 s
[2025-11-21 08:48:17] 2025-11-21 13:47:43,763 | INFO     | ..............................
[2025-11-21 08:48:17] 2025-11-21 13:47:43,855 | INFO     | 
[2025-11-21 08:48:17] 2025-11-21 13:47:43,855 | INFO     | job summary report
[2025-11-21 08:48:17] 2025-11-21 13:47:43,855 | INFO     | --------------------------------------------------
[2025-11-21 08:48:17] 2025-11-21 13:47:43,855 | INFO     | PanDA job id: 6893872235
[2025-11-21 08:48:17] 2025-11-21 13:47:43,855 | INFO     | task id: 47523449
[2025-11-21 08:48:17] 2025-11-21 13:47:43,857 | INFO     | errors: (none)
[2025-11-21 08:48:17] 2025-11-21 13:47:43,857 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 08:48:17] 2025-11-21 13:47:43,857 | INFO     | pilot state: finished 
[2025-11-21 08:48:17] 2025-11-21 13:47:43,857 | INFO     | transexitcode: 0
[2025-11-21 08:48:17] 2025-11-21 13:47:43,857 | INFO     | exeerrorcode: 0
[2025-11-21 08:48:17] 2025-11-21 13:47:43,857 | INFO     | exeerrordiag: 
[2025-11-21 08:48:17] 2025-11-21 13:47:43,857 | INFO     | exitcode: 0
[2025-11-21 08:48:17] 2025-11-21 13:47:43,857 | INFO     | exitmsg: OK
[2025-11-21 08:48:17] 2025-11-21 13:47:43,857 | INFO     | cpuconsumptiontime: 289287 s
[2025-11-21 08:48:17] 2025-11-21 13:47:43,858 | INFO     | nevents: 1000
[2025-11-21 08:48:17] 2025-11-21 13:47:43,858 | INFO     | neventsw: 0
[2025-11-21 08:48:17] 2025-11-21 13:47:43,858 | INFO     | pid: 1575215
[2025-11-21 08:48:17] 2025-11-21 13:47:43,858 | INFO     | pgrp: 1575215
[2025-11-21 08:48:17] 2025-11-21 13:47:43,858 | INFO     | corecount: 8
[2025-11-21 08:48:17] 2025-11-21 13:47:43,858 | INFO     | event service: False
[2025-11-21 08:48:17] 2025-11-21 13:47:43,858 | INFO     | sizes: {0: 2298635, 1: 2298834, 12: 2298834, 16: 2299124, 23: 2299152, 42534: 2343407, 42535: 2343534, 42540: 2352584, 42543: 2352640, 42551: 2352886}
[2025-11-21 08:48:17] 2025-11-21 13:47:43,858 | INFO     | --------------------------------------------------
[2025-11-21 08:48:17] 2025-11-21 13:47:43,858 | INFO     | 
[2025-11-21 08:48:17] 2025-11-21 13:47:43,859 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-21 08:48:17] 2025-11-21 13:47:43,895 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 08:48:17] 2025-11-21 13:47:43,897 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 08:48:17] 2025-11-21 13:47:43,897 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 08:48:17] 2025-11-21 13:47:43,897 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 08:48:17] 2025-11-21 13:47:43,897 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 08:48:17] 2025-11-21 13:47:43,897 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 08:48:17] 2025-11-21 13:47:43,898 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 08:48:17] 2025-11-21 13:47:43,898 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 08:48:17] 2025-11-21 13:47:43,898 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 08:48:17] 2025-11-21 13:47:43,898 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 08:48:17] 2025-11-21 13:47:43,898 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 08:48:17] 2025-11-21 13:47:43,898 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 08:48:17] 2025-11-21 13:47:43,898 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 08:48:17] 2025-11-21 13:47:43,898 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 08:48:17] 2025-11-21 13:47:43,898 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 08:48:17] 2025-11-21 13:47:43,899 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 08:48:17] 2025-11-21 13:47:43,899 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 08:48:17] 2025-11-21 13:47:43,899 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 08:48:17] 2025-11-21 13:47:43,899 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 08:48:17] 2025-11-21 13:47:43,899 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 08:48:17] 2025-11-21 13:47:43,899 | INFO     | job 6893872235 has completed (purged errors)
[2025-11-21 08:48:17] 2025-11-21 13:47:43,899 | INFO     | overall cleanup function is called
[2025-11-21 08:48:17] 2025-11-21 13:47:44,914 | INFO     | --- collectZombieJob: --- 10, [1575215]
[2025-11-21 08:48:17] 2025-11-21 13:47:44,914 | INFO     | zombie collector waiting for pid 1575215
[2025-11-21 08:48:17] 2025-11-21 13:47:44,914 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 08:48:17] 2025-11-21 13:47:44,915 | INFO     | collected zombie processes
[2025-11-21 08:48:17] 2025-11-21 13:47:44,915 | INFO     | will attempt to kill all subprocesses of pid=1575215
[2025-11-21 08:48:17] 2025-11-21 13:47:45,170 | INFO     | process IDs to be killed: [1575215] (in reverse order)
[2025-11-21 08:48:17] 2025-11-21 13:47:45,273 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 08:48:17] 2025-11-21 13:47:45,273 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 08:48:17] 2025-11-21 13:47:45,281 | INFO     | did not find any defunct processes belonging to 1575215
[2025-11-21 08:48:17] 2025-11-21 13:47:45,287 | INFO     | did not find any defunct processes belonging to 1575215
[2025-11-21 08:48:17] 2025-11-21 13:47:45,289 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 08:48:17] 2025-11-21 13:47:45,289 | INFO     | ready for new job
[2025-11-21 08:48:17] 2025-11-21 13:47:45,289 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 08:48:17] 2025-11-21 13:47:45,293 | INFO     | ***************************************
[2025-11-21 08:48:17] 2025-11-21 13:47:45,293 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 08:48:17] 2025-11-21 13:47:45,293 | INFO     | ***************************************
[2025-11-21 08:48:17] 2025-11-21 13:47:45,293 | INFO     | 
[2025-11-21 08:48:17] 2025-11-21 13:47:45,295 | INFO     | architecture information:
[2025-11-21 08:48:17] 2025-11-21 13:47:45,296 | INFO     | executing command: cat /etc/os-release
[2025-11-21 08:48:17] 2025-11-21 13:47:45,319 | INFO     | cat /etc/os-release:
[2025-11-21 08:48:17] NAME="CentOS Linux"
[2025-11-21 08:48:17] VERSION="7 (Core)"
[2025-11-21 08:48:17] ID="centos"
[2025-11-21 08:48:17] ID_LIKE="rhel fedora"
[2025-11-21 08:48:17] VERSION_ID="7"
[2025-11-21 08:48:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 08:48:17] ANSI_COLOR="0;31"
[2025-11-21 08:48:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 08:48:17] HOME_URL="https://www.centos.org/"
[2025-11-21 08:48:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 08:48:17] 
[2025-11-21 08:48:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 08:48:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 08:48:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 08:48:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 08:48:17] 
[2025-11-21 08:48:17] 2025-11-21 13:47:45,319 | INFO     | ***************************************
[2025-11-21 08:48:17] 2025-11-21 13:47:45,822 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-21 08:48:17] 2025-11-21 13:47:45,841 | INFO     | sufficient remaining disk space (48100278272 B)
[2025-11-21 08:48:17] 2025-11-21 13:47:45,842 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 08:48:17] 2025-11-21 13:47:45,842 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 08:48:17] 2025-11-21 13:47:45,842 | INFO     | update_server=False
[2025-11-21 08:48:17] 2025-11-21 13:47:45,842 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 08:48:17] 2025-11-21 13:47:45,847 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 08:48:17] 2025-11-21 13:47:45,863 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 08:48:17] 2025-11-21 13:47:46,046 | INFO     | all data control threads have been joined
[2025-11-21 08:48:17] 2025-11-21 13:47:46,372 | INFO     | all job control threads have been joined
[2025-11-21 08:48:17] 2025-11-21 13:47:46,467 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 08:48:17] 2025-11-21 13:47:46,467 | INFO     | aborting loop
[2025-11-21 08:48:17] 2025-11-21 13:47:46,764 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 08:48:17] 2025-11-21 13:47:46,847 | INFO     | [job] retrieve thread has finished
[2025-11-21 08:48:17] 2025-11-21 13:47:46,853 | INFO     | [job] queue monitor thread has finished
[2025-11-21 08:48:17] 2025-11-21 13:47:46,884 | INFO     | [payload] failed_post thread has finished
[2025-11-21 08:48:17] 2025-11-21 13:47:47,052 | INFO     | [data] control thread has finished
[2025-11-21 08:48:17] 2025-11-21 13:47:47,122 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 08:48:17] 2025-11-21 13:47:47,156 | INFO     | all payload control threads have been joined
[2025-11-21 08:48:17] 2025-11-21 13:47:47,246 | INFO     | [job] validate thread has finished
[2025-11-21 08:48:17] 2025-11-21 13:47:47,377 | INFO     | [job] control thread has finished
[2025-11-21 08:48:17] 2025-11-21 13:47:47,472 | INFO     | [job] job monitor thread has finished
[2025-11-21 08:48:17] 2025-11-21 13:47:47,869 | INFO     | [data] copytool_out thread has finished
[2025-11-21 08:48:17] 2025-11-21 13:47:47,884 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 08:48:17] 2025-11-21 13:47:47,889 | INFO     | [data] copytool_in thread has finished
[2025-11-21 08:48:17] 2025-11-21 13:47:47,962 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 08:48:17] 2025-11-21 13:47:48,022 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 08:48:17] 2025-11-21 13:47:48,161 | INFO     | [payload] control thread has finished
[2025-11-21 08:48:17] 2025-11-21 13:47:48,381 | INFO     | [payload] validate_post thread has finished
[2025-11-21 08:48:17] 2025-11-21 13:47:50,771 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 08:48:17] 2025-11-21 13:48:05,546 | INFO     | [monitor] cgroup control has ended
[2025-11-21 08:48:17] 2025-11-21 13:48:06,125 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139682747266880)>', '<ExcThread(monitor, started 139681731704576)>']
[2025-11-21 08:48:17] 2025-11-21 13:48:11,150 | INFO     | all workflow threads have been joined
[2025-11-21 08:48:17] 2025-11-21 13:48:11,150 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 08:48:17] 2025-11-21 13:48:11,151 | INFO     | traces error code: 0
[2025-11-21 08:48:17] 2025-11-21 13:48:11,151 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 08:48:17] 2025-11-21 13:48:16,701 | INFO     | PID=1568771 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 08:48:17] 2025-11-21 13:48:16,702 | INFO     | .. there are 7 such processes running
[2025-11-21 08:48:17] 2025-11-21 13:48:16,703 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 08:48:17] 2025-11-21 13:48:16,703 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 08:48:17] 2025-11-21 13:48:16,703 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 08:48:17] 2025-11-21 13:48:16,703 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 08:48:17] 2025-11-21 13:48:16,703 | INFO     | [monitor] control thread has ended
[2025-11-21 08:48:17] 2025-11-21 13:48:16,817 [wrapper] ==== pilot stdout END ====
[2025-11-21 08:48:17] 2025-11-21 13:48:16,825 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 08:48:17] 2025-11-21 13:48:16,829 [wrapper] pilotpid: 1568771
[2025-11-21 08:48:17] 2025-11-21 13:48:16,836 [wrapper] Pilot exit status: 0
[2025-11-21 08:48:17] 2025-11-21 13:48:16,859 [wrapper] pandaids: 6893872235
[2025-11-21 08:48:17] 2025-11-21 13:48:16,921 [wrapper] cleanup supervisor_pilot 2506548 1568772
[2025-11-21 08:48:17] 2025-11-21 13:48:16,928 [wrapper] Test setup, not cleaning
[2025-11-21 08:48:17] 2025-11-21 13:48:16,935 [wrapper] apfmon messages muted
[2025-11-21 08:48:17] 2025-11-21 13:48:16,941 [wrapper] ==== wrapper stdout END ====
[2025-11-21 08:48:17] 2025-11-21 13:48:16,946 [wrapper] ==== wrapper stderr END ====
[2025-11-21 08:48:17]  *** Error codes and diagnostics ***
[2025-11-21 08:48:17]     "exeErrorCode": 0,
[2025-11-21 08:48:17]     "exeErrorDiag": "",
[2025-11-21 08:48:17]     "pilotErrorCode": 0,
[2025-11-21 08:48:17]     "pilotErrorDiag": "",
[2025-11-21 08:48:17]  *** Listing of results directory ***
[2025-11-21 08:48:17] total 1315412
[2025-11-21 08:48:17] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 10:07 pilot3.tar.gz
[2025-11-21 08:48:17] -rwx------. 1 boincer umatlas     36292 Nov 20 10:13 runpilot2-wrapper.sh
[2025-11-21 08:48:17] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 10:13 queuedata.json
[2025-11-21 08:48:17] -rw-r--r--. 1 boincer umatlas       100 Nov 20 20:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 08:48:17] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 20 20:57 run_atlas
[2025-11-21 08:48:17] -rw-r--r--. 1 boincer umatlas       105 Nov 20 20:57 job.xml
[2025-11-21 08:48:17] -rw-r--r--. 2 boincer umatlas 411382089 Nov 20 20:57 EVNT.47493127._000673.pool.root.1
[2025-11-21 08:48:17] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 20:57 start_atlas.sh
[2025-11-21 08:48:17] drwxrwx--x. 2 boincer umatlas      4096 Nov 20 20:57 shared
[2025-11-21 08:48:17] -rw-r--r--. 2 boincer umatlas    590101 Nov 20 20:57 input.tar.gz
[2025-11-21 08:48:17] -rw-r--r--. 1 boincer umatlas         0 Nov 20 20:57 boinc_lockfile
[2025-11-21 08:48:17] -rw-r--r--. 1 boincer umatlas      2785 Nov 20 20:57 pandaJob.out
[2025-11-21 08:48:17] -rw-------. 1 boincer umatlas        57 Nov 20 20:57 setup.sh.local
[2025-11-21 08:48:17] -rw-------. 1 boincer umatlas    989817 Nov 20 20:57 agis_schedconf.cvmfs.json
[2025-11-21 08:48:17] drwx------. 5 boincer umatlas      4096 Nov 20 20:57 pilot3
[2025-11-21 08:48:17] -rw-r--r--. 1 boincer umatlas       533 Nov 21 08:29 boinc_task_state.xml
[2025-11-21 08:48:17] -rw-r--r--. 1 boincer umatlas      6660 Nov 21 08:38 init_data.xml
[2025-11-21 08:48:17] -rw-------. 1 boincer umatlas 915720103 Nov 21 08:46 HITS.47523449._006723.pool.root.1
[2025-11-21 08:48:17] -rw-------. 1 boincer umatlas      1050 Nov 21 08:47 memory_monitor_summary.json
[2025-11-21 08:48:17] -rw-------. 1 boincer umatlas   1526164 Nov 21 08:47 agis_ddmendpoints.agis.ALL.json
[2025-11-21 08:48:17] -rw-------. 1 boincer umatlas   1962005 Nov 21 08:47 log.47523449._006723.job.log.tgz.1
[2025-11-21 08:48:17] -rw-------. 1 boincer umatlas      8635 Nov 21 08:47 heartbeat.json
[2025-11-21 08:48:17] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 08:48 boinc_mmap_file
[2025-11-21 08:48:17] -rw-------. 1 boincer umatlas        95 Nov 21 08:48 pilot_heartbeat.json
[2025-11-21 08:48:17] -rw-------. 1 boincer umatlas       822 Nov 21 08:48 pilotlog.txt
[2025-11-21 08:48:17] -rw-------. 1 boincer umatlas   6016343 Nov 21 08:48 log.47523449._006723.job.log.1
[2025-11-21 08:48:17] -rw-r--r--. 1 boincer umatlas        29 Nov 21 08:48 wrapper_checkpoint.txt
[2025-11-21 08:48:17] -rw-------. 1 boincer umatlas       353 Nov 21 08:48 output.list
[2025-11-21 08:48:17] -rw-r--r--. 1 boincer umatlas       620 Nov 21 08:48 runtime_log
[2025-11-21 08:48:17] -rw-------. 1 boincer umatlas   7997440 Nov 21 08:48 result.tar.gz
[2025-11-21 08:48:17] -rw-r--r--. 1 boincer umatlas      9343 Nov 21 08:48 runtime_log.err
[2025-11-21 08:48:17] -rw-------. 1 boincer umatlas       660 Nov 21 08:48 4C2MDmTWLg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8BIKDmr0X7Kn.diag
[2025-11-21 08:48:17] -rw-r--r--. 1 boincer umatlas     21362 Nov 21 08:48 stderr.txt
[2025-11-21 08:48:17] HITS file was successfully produced:
[2025-11-21 08:48:17] -rw-------. 1 boincer umatlas 915720103 Nov 21 08:46 shared/HITS.pool.root.1
[2025-11-21 08:48:17]  *** Contents of shared directory: ***
[2025-11-21 08:48:17] total 1304416
[2025-11-21 08:48:17] -rw-r--r--. 2 boincer umatlas 411382089 Nov 20 20:57 ATLAS.root_0
[2025-11-21 08:48:17] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 20:57 start_atlas.sh
[2025-11-21 08:48:17] -rw-r--r--. 2 boincer umatlas    590101 Nov 20 20:57 input.tar.gz
[2025-11-21 08:48:17] -rw-------. 1 boincer umatlas 915720103 Nov 21 08:46 HITS.pool.root.1
[2025-11-21 08:48:17] -rw-------. 1 boincer umatlas   7997440 Nov 21 08:48 result.tar.gz
08:48:18 (1564587): run_atlas exited; CPU time 289706.022958
08:48:18 (1564587): called boinc_finish(0)

</stderr_txt>
]]>

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