Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:10:29 (2093100): wrapper (7.7.26015): starting
21:10:29 (2093100): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 21:10:29] Arguments: --nthreads 8
[2025-11-20 21:10:29] Threads: 8
[2025-11-20 21:10:29] Checking for CVMFS
[2025-11-20 21:10:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 21:10:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 21:10:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 21:10:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 21:10:31] 2.13.2.0 37103 25893 219240 153103 1 560 31382209 40960001 9529 16776704 0 34851496 99.584 35382533 21758 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 21:10:31] CVMFS is ok
[2025-11-20 21:10:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 21:10:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 21:10:31] Further information can be found at the LHC@home message board.
[2025-11-20 21:10:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 21:10:31] Checking for apptainer binary...
[2025-11-20 21:10:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 21:10:31] Running /usr/bin/apptainer --version
[2025-11-20 21:10:31] apptainer version 1.4.4-1.el9
[2025-11-20 21:10:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 21:10:32] c-211-9.aglt2.org
[2025-11-20 21:10:32] apptainer works
[2025-11-20 21:10:32] Set ATHENA_PROC_NUMBER=8
[2025-11-20 21:10:32] Set ATHENA_CORE_NUMBER=8
[2025-11-20 21:10:32] Starting ATLAS job with PandaID=6893872389
[2025-11-20 21:10:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:00:19 (2426216): wrapper (7.7.26015): starting
00:00:19 (2426216): wrapper: running run_atlas (--nthreads 9)
[2025-11-21 00:00:19] Arguments: --nthreads 9
[2025-11-21 00:00:19] Threads: 9
[2025-11-21 00:00:19] This job has been restarted, cleaning up previous attempt
[2025-11-21 00:00:19] Checking for CVMFS
[2025-11-21 00:00:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 00:00:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 00:00:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 00:00:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 00:00:19] 2.13.2.0 37103 26063 201904 153108 3 120 31568565 40960000 6523 16776704 0 35181400 99.587 35389178 21758 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 00:00:19] CVMFS is ok
[2025-11-21 00:00:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 00:00:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 00:00:19] Further information can be found at the LHC@home message board.
[2025-11-21 00:00:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 00:00:19] Checking for apptainer binary...
[2025-11-21 00:00:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 00:00:19] Running /usr/bin/apptainer --version
[2025-11-21 00:00:19] apptainer version 1.4.4-1.el9
[2025-11-21 00:00:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 00:00:19] c-211-9.aglt2.org
[2025-11-21 00:00:19] apptainer works
[2025-11-21 00:00:19] Set ATHENA_PROC_NUMBER=9
[2025-11-21 00:00:19] Set ATHENA_CORE_NUMBER=9
[2025-11-21 00:00:19] Starting ATLAS job with PandaID=6893872389
[2025-11-21 00:00:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 03:07:25]  *** The last 200 lines of the pilot log: ***
[2025-11-22 03:07:25] 2025-11-22 07:32:04,631 | INFO     | time since job start (95496s) is within the limit (172800.0s)
[2025-11-22 03:07:25] 2025-11-22 07:32:06,679 | INFO     | time since job start (95498s) is within the limit (172800.0s)
[2025-11-22 03:07:25] 2025-11-22 07:32:06,966 | INFO     | monitor loop #5408: job 0:6893872389 is in state 'finished'
[2025-11-22 03:07:25] 2025-11-22 07:32:06,966 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 03:07:25] 2025-11-22 07:32:08,686 | INFO     | time since job start (95500s) is within the limit (172800.0s)
[2025-11-22 03:07:25] 2025-11-22 07:32:09,472 | INFO     | monitor loop #5409: job 0:6893872389 is in state 'finished'
[2025-11-22 03:07:25] 2025-11-22 07:32:09,509 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 03:07:25] 2025-11-22 07:32:12,099 | INFO     | monitor loop #5410: job 0:6893872389 is in state 'finished'
[2025-11-22 03:07:25] 2025-11-22 07:32:12,100 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 03:07:25] 2025-11-22 07:32:12,775 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 03:07:25] 2025-11-22 07:32:12,874 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2565.3238333333325
[2025-11-22 03:07:25] 2025-11-22 07:32:13,185 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6893872389/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 03:07:25] 2025-11-22 07:32:13,186 | INFO     | extracted standard info from prmon json
[2025-11-22 03:07:25] 2025-11-22 07:32:13,186 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 03:07:25] 2025-11-22 07:32:13,186 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 03:07:25] 2025-11-22 07:32:14,170 | INFO     | fitting pss+swap vs Time
[2025-11-22 03:07:25] 2025-11-22 07:32:14,270 | INFO     | sum of square deviations: 1186646332483.9475
[2025-11-22 03:07:25] 2025-11-22 07:32:14,732 | INFO     | monitor loop #5411: job 0:6893872389 is in state 'finished'
[2025-11-22 03:07:25] 2025-11-22 07:32:14,732 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 03:07:25] 2025-11-22 07:32:15,162 | INFO     | sum of deviations: -1913273702246.5034
[2025-11-22 03:07:25] 2025-11-22 07:32:15,162 | INFO     | mean x: 1763748934.2039642
[2025-11-22 03:07:25] 2025-11-22 07:32:15,162 | INFO     | mean y: 3071787.9200767265
[2025-11-22 03:07:25] 2025-11-22 07:32:15,162 | INFO     | intersect: 2846829326.119347
[2025-11-22 03:07:25] 2025-11-22 07:32:15,200 | INFO     | chi2: 52.255059366707286
[2025-11-22 03:07:25] 2025-11-22 07:32:15,281 | INFO     | sum of square deviations: 1175308462696.4983
[2025-11-22 03:07:25] 2025-11-22 07:32:16,925 | INFO     | sum of deviations: -1278114798135.0142
[2025-11-22 03:07:25] 2025-11-22 07:32:16,925 | INFO     | mean x: 1763748781.725465
[2025-11-22 03:07:25] 2025-11-22 07:32:16,925 | INFO     | mean y: 3080328.8364336113
[2025-11-22 03:07:25] 2025-11-22 07:32:16,925 | INFO     | intersect: 1921107374.2164721
[2025-11-22 03:07:25] 2025-11-22 07:32:16,927 | INFO     | chi2: 47.680368241084025
[2025-11-22 03:07:25] 2025-11-22 07:32:16,928 | INFO     | current chi2=47.680368241084025 (change=8.754542011941307 %)
[2025-11-22 03:07:25] 2025-11-22 07:32:16,928 | INFO     | right removable region: 1558
[2025-11-22 03:07:25] 2025-11-22 07:32:17,130 | INFO     | sum of square deviations: 1175301683960.686
[2025-11-22 03:07:25] 2025-11-22 07:32:17,334 | INFO     | monitor loop #5412: job 0:6893872389 is in state 'finished'
[2025-11-22 03:07:25] 2025-11-22 07:32:17,334 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 03:07:25] 2025-11-22 07:32:18,768 | INFO     | sum of deviations: -2375193228365.4077
[2025-11-22 03:07:25] 2025-11-22 07:32:18,769 | INFO     | mean x: 1763749086.7280307
[2025-11-22 03:07:25] 2025-11-22 07:32:18,769 | INFO     | mean y: 3077993.579217447
[2025-11-22 03:07:25] 2025-11-22 07:32:18,769 | INFO     | intersect: 3567477623.480727
[2025-11-22 03:07:25] 2025-11-22 07:32:18,872 | INFO     | chi2: 50.10917384772267
[2025-11-22 03:07:25] 2025-11-22 07:32:18,873 | INFO     | current chi2=50.10917384772267 (change=4.106560292900172 %)
[2025-11-22 03:07:25] 2025-11-22 07:32:18,874 | INFO     | left removable region: 10
[2025-11-22 03:07:25] 2025-11-22 07:32:18,876 | INFO     | sum of square deviations: 1150607176519.8628
[2025-11-22 03:07:25] 2025-11-22 07:32:19,975 | INFO     | monitor loop #5413: job 0:6893872389 is in state 'finished'
[2025-11-22 03:07:25] 2025-11-22 07:32:19,975 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 03:07:25] 2025-11-22 07:32:20,576 | INFO     | sum of deviations: -1786877952102.7898
[2025-11-22 03:07:25] 2025-11-22 07:32:20,576 | INFO     | mean x: 1763749056.2739017
[2025-11-22 03:07:25] 2025-11-22 07:32:20,576 | INFO     | mean y: 3090265.284883721
[2025-11-22 03:07:25] 2025-11-22 07:32:20,576 | INFO     | intersect: 2742169567.0760555
[2025-11-22 03:07:25] 2025-11-22 07:32:20,579 | INFO     | chi2: 44.614363528191774
[2025-11-22 03:07:25] 2025-11-22 07:32:20,579 | INFO     | current memory leak: -1.55 B/s (using 1548 data points, chi2=44.61)
[2025-11-22 03:07:25] 2025-11-22 07:32:20,674 | INFO     | could have reported an average CPU frequency of 2682 MHz (55 samples)
[2025-11-22 03:07:25] 2025-11-22 07:32:20,674 | INFO     | ..............................
[2025-11-22 03:07:25] 2025-11-22 07:32:20,674 | INFO     | . Timing measurements:
[2025-11-22 03:07:25] 2025-11-22 07:32:20,674 | INFO     | . get job = 0 s
[2025-11-22 03:07:25] 2025-11-22 07:32:20,674 | INFO     | . initial setup = 1 s
[2025-11-22 03:07:25] 2025-11-22 07:32:20,674 | INFO     | . payload setup = 6 s
[2025-11-22 03:07:25] 2025-11-22 07:32:20,675 | INFO     | . stage-in = 0 s
[2025-11-22 03:07:25] 2025-11-22 07:32:20,675 | INFO     | . payload execution = 95386 s
[2025-11-22 03:07:25] 2025-11-22 07:32:20,675 | INFO     | . stage-out = 33 s
[2025-11-22 03:07:25] 2025-11-22 07:32:20,675 | INFO     | . log creation = 16 s
[2025-11-22 03:07:25] 2025-11-22 07:32:20,675 | INFO     | ..............................
[2025-11-22 03:07:25] 2025-11-22 07:32:20,955 | INFO     | PID=2435580 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 03:07:25] 2025-11-22 07:32:20,955 | INFO     | .. there are 18 such processes running
[2025-11-22 03:07:25] 2025-11-22 07:32:21,359 | INFO     | 
[2025-11-22 03:07:25] 2025-11-22 07:32:21,359 | INFO     | job summary report
[2025-11-22 03:07:25] 2025-11-22 07:32:21,359 | INFO     | --------------------------------------------------
[2025-11-22 03:07:25] 2025-11-22 07:32:21,359 | INFO     | PanDA job id: 6893872389
[2025-11-22 03:07:25] 2025-11-22 07:32:21,360 | INFO     | task id: 47523449
[2025-11-22 03:07:25] 2025-11-22 07:32:21,360 | INFO     | errors: (none)
[2025-11-22 03:07:25] 2025-11-22 07:32:21,360 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 03:07:25] 2025-11-22 07:32:21,360 | INFO     | pilot state: finished 
[2025-11-22 03:07:25] 2025-11-22 07:32:21,360 | INFO     | transexitcode: 0
[2025-11-22 03:07:25] 2025-11-22 07:32:21,360 | INFO     | exeerrorcode: 0
[2025-11-22 03:07:25] 2025-11-22 07:32:21,360 | INFO     | exeerrordiag: 
[2025-11-22 03:07:25] 2025-11-22 07:32:21,360 | INFO     | exitcode: 0
[2025-11-22 03:07:25] 2025-11-22 07:32:21,360 | INFO     | exitmsg: OK
[2025-11-22 03:07:25] 2025-11-22 07:32:21,360 | INFO     | cpuconsumptiontime: 326793 s
[2025-11-22 03:07:25] 2025-11-22 07:32:21,361 | INFO     | nevents: 1000
[2025-11-22 03:07:25] 2025-11-22 07:32:21,361 | INFO     | neventsw: 0
[2025-11-22 03:07:25] 2025-11-22 07:32:21,361 | INFO     | pid: 2467527
[2025-11-22 03:07:25] 2025-11-22 07:32:21,361 | INFO     | pgrp: 2467527
[2025-11-22 03:07:25] 2025-11-22 07:32:21,361 | INFO     | corecount: 9
[2025-11-22 03:07:25] 2025-11-22 07:32:21,361 | INFO     | event service: False
[2025-11-22 03:07:25] 2025-11-22 07:32:21,361 | INFO     | sizes: {0: 2298805, 4: 2299067, 11: 2299095, 95401: 2368353, 95403: 2368352, 95437: 2377402, 95438: 2377586, 95497: 2377832}
[2025-11-22 03:07:25] 2025-11-22 07:32:21,361 | INFO     | --------------------------------------------------
[2025-11-22 03:07:25] 2025-11-22 07:32:21,361 | INFO     | 
[2025-11-22 03:07:25] 2025-11-22 07:32:21,361 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-22 03:07:25] 2025-11-22 07:32:21,580 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 03:07:25] 2025-11-22 07:32:21,580 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 03:07:25] 2025-11-22 07:32:21,580 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 03:07:25] 2025-11-22 07:32:21,580 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 03:07:25] 2025-11-22 07:32:21,580 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 03:07:25] 2025-11-22 07:32:21,580 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 03:07:25] 2025-11-22 07:32:21,581 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 03:07:25] 2025-11-22 07:32:21,581 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 03:07:25] 2025-11-22 07:32:21,581 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 03:07:25] 2025-11-22 07:32:21,581 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 03:07:25] 2025-11-22 07:32:21,581 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 03:07:25] 2025-11-22 07:32:21,581 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 03:07:25] 2025-11-22 07:32:21,581 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 03:07:25] 2025-11-22 07:32:21,581 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 03:07:25] 2025-11-22 07:32:21,581 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 03:07:25] 2025-11-22 07:32:21,581 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 03:07:25] 2025-11-22 07:32:21,581 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 03:07:25] 2025-11-22 07:32:21,582 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 03:07:25] 2025-11-22 07:32:21,582 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 03:07:25] 2025-11-22 07:32:21,582 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 03:07:25] 2025-11-22 07:32:21,582 | INFO     | job 6893872389 has completed (purged errors)
[2025-11-22 03:07:25] 2025-11-22 07:32:21,582 | INFO     | overall cleanup function is called
[2025-11-22 03:07:25] 2025-11-22 07:32:23,264 | INFO     | --- collectZombieJob: --- 10, [2467527]
[2025-11-22 03:07:25] 2025-11-22 07:32:23,264 | INFO     | zombie collector waiting for pid 2467527
[2025-11-22 03:07:25] 2025-11-22 07:32:23,265 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 03:07:25] 2025-11-22 07:32:23,265 | INFO     | collected zombie processes
[2025-11-22 03:07:25] 2025-11-22 07:32:23,265 | INFO     | will attempt to kill all subprocesses of pid=2467527
[2025-11-22 03:07:25] 2025-11-22 07:32:25,755 | INFO     | process IDs to be killed: [2467527] (in reverse order)
[2025-11-22 03:07:25] 2025-11-22 07:32:26,768 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 03:07:25] 2025-11-22 07:32:26,768 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 03:07:25] 2025-11-22 07:32:26,880 | INFO     | did not find any defunct processes belonging to 2467527
[2025-11-22 03:07:25] 2025-11-22 07:32:27,007 | INFO     | did not find any defunct processes belonging to 2467527
[2025-11-22 03:07:25] 2025-11-22 07:32:27,039 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 03:07:25] 2025-11-22 07:32:27,040 | INFO     | ready for new job
[2025-11-22 03:07:25] 2025-11-22 07:32:27,040 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 03:07:25] 2025-11-22 07:32:27,072 | INFO     | ***************************************
[2025-11-22 03:07:25] 2025-11-22 07:32:27,072 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 03:07:25] 2025-11-22 07:32:27,073 | INFO     | ***************************************
[2025-11-22 03:07:25] 2025-11-22 07:32:27,073 | INFO     | 
[2025-11-22 03:07:25] 2025-11-22 07:32:27,111 | INFO     | architecture information:
[2025-11-22 03:07:25] 2025-11-22 07:32:27,123 | INFO     | executing command: cat /etc/os-release
[2025-11-22 03:07:25] 2025-11-22 07:32:27,301 | INFO     | cat /etc/os-release:
[2025-11-22 03:07:25] NAME="CentOS Linux"
[2025-11-22 03:07:25] VERSION="7 (Core)"
[2025-11-22 03:07:25] ID="centos"
[2025-11-22 03:07:25] ID_LIKE="rhel fedora"
[2025-11-22 03:07:25] VERSION_ID="7"
[2025-11-22 03:07:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 03:07:25] ANSI_COLOR="0;31"
[2025-11-22 03:07:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 03:07:25] HOME_URL="https://www.centos.org/"
[2025-11-22 03:07:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 03:07:25] 
[2025-11-22 03:07:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 03:07:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 03:07:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 03:07:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 03:07:25] 
[2025-11-22 03:07:25] 2025-11-22 07:32:27,302 | INFO     | ***************************************
[2025-11-22 03:07:25] 2025-11-22 07:32:27,805 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-22 03:07:25] 2025-11-22 07:32:28,006 | INFO     | sufficient remaining disk space (54034169856 B)
[2025-11-22 03:07:25] 2025-11-22 07:32:28,006 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 03:07:25] 2025-11-22 07:32:28,006 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 03:07:25] 2025-11-22 07:32:28,006 | INFO     | update_server=False
[2025-11-22 03:07:25] 2025-11-22 07:32:28,007 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 03:07:25] 2025-11-22 07:32:28,024 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 03:07:25] 2025-11-22 07:32:28,195 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 03:07:25] 2025-11-22 07:32:28,560 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 03:07:25] 2025-11-22 07:32:28,561 | INFO     | aborting loop
[2025-11-22 03:07:25] 2025-11-22 07:32:28,639 | INFO     | all data control threads have been joined
[2025-11-22 03:07:25] 2025-11-22 07:32:28,837 | INFO     | all payload control threads have been joined
[2025-11-22 03:07:25] 2025-11-22 07:32:29,012 | INFO     | [job] retrieve thread has finished
[2025-11-22 03:07:25] 2025-11-22 07:32:29,552 | INFO     | all job control threads have been joined
[2025-11-22 03:07:25] 2025-11-22 07:32:29,566 | INFO     | [job] job monitor thread has finished
[2025-11-22 03:07:25] 2025-11-22 07:32:29,645 | INFO     | [data] control thread has finished
[2025-11-22 03:07:25] 2025-11-22 07:32:29,842 | INFO     | [payload] control thread has finished
[2025-11-22 03:07:25] 2025-11-22 07:32:29,924 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 03:07:25] 2025-11-22 07:32:30,035 | INFO     | [payload] failed_post thread has finished
[2025-11-22 03:07:25] 2025-11-22 07:32:30,051 | INFO     | [payload] validate_post thread has finished
[2025-11-22 03:07:25] 2025-11-22 07:32:30,056 | INFO     | [data] copytool_in thread has finished
[2025-11-22 03:07:25] 2025-11-22 07:32:30,202 | INFO     | [data] copytool_out thread has finished
[2025-11-22 03:07:25] 2025-11-22 07:32:30,430 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 03:07:25] 2025-11-22 07:32:30,435 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 03:07:25] 2025-11-22 07:32:30,435 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 03:07:25] 2025-11-22 07:32:30,436 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 03:07:25] 2025-11-22 07:32:30,478 | INFO     | [job] validate thread has finished
[2025-11-22 03:07:25] 2025-11-22 07:32:30,558 | INFO     | [job] control thread has finished
[2025-11-22 03:07:25] 2025-11-22 07:32:31,466 | INFO     | [job] queue monitor thread has finished
[2025-11-22 03:07:25] 2025-11-22 07:32:31,607 | INFO     | [monitor] cgroup control has ended
[2025-11-22 03:07:25] 2025-11-22 07:32:32,069 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 03:07:25] 2025-11-22 07:32:32,386 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140369411123008)>', '<ExcThread(monitor, started 140368783861504)>']
[2025-11-22 03:07:25] 2025-11-22 07:32:37,412 | INFO     | all workflow threads have been joined
[2025-11-22 03:07:25] 2025-11-22 07:32:37,412 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 03:07:25] 2025-11-22 07:32:37,413 | INFO     | traces error code: 0
[2025-11-22 03:07:25] 2025-11-22 07:32:37,413 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 03:07:25] 2025-11-22 07:32:54,591 | INFO     | PID=2435580 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 03:07:25] 2025-11-22 07:32:54,591 | INFO     | .. there are 18 such processes running
[2025-11-22 03:07:25] 2025-11-22 07:32:54,592 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 03:07:25] 2025-11-22 07:32:54,592 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 03:07:25] 2025-11-22 07:32:54,593 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 03:07:25] 2025-11-22 07:32:54,593 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 03:07:25] 2025-11-22 07:32:54,593 | INFO     | [monitor] control thread has ended
[2025-11-22 03:07:25] 2025-11-22 07:32:56,593 [wrapper] ==== pilot stdout END ====
[2025-11-22 03:07:25] 2025-11-22 07:32:56,653 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 03:07:25] 2025-11-22 07:32:56,670 [wrapper] pilotpid: 2435580
[2025-11-22 03:07:25] 2025-11-22 07:32:56,687 [wrapper] Pilot exit status: 0
[2025-11-22 03:07:25] 2025-11-22 07:32:56,886 [wrapper] pandaids: 6893872389 6893872389
[2025-11-22 03:07:25] 2025-11-22 07:32:57,853 [wrapper] cleanup supervisor_pilot 1652010 2435581
[2025-11-22 03:07:25] 2025-11-22 07:32:57,899 [wrapper] Test setup, not cleaning
[2025-11-22 03:07:25] 2025-11-22 07:32:57,948 [wrapper] apfmon messages muted
[2025-11-22 03:07:25] 2025-11-22 07:32:58,005 [wrapper] ==== wrapper stdout END ====
[2025-11-22 03:07:25] 2025-11-22 07:32:58,047 [wrapper] ==== wrapper stderr END ====
[2025-11-22 03:07:25]  *** Error codes and diagnostics ***
[2025-11-22 03:07:25]     "exeErrorCode": 0,
[2025-11-22 03:07:25]     "exeErrorDiag": "",
[2025-11-22 03:07:25]     "pilotErrorCode": 0,
[2025-11-22 03:07:25]     "pilotErrorDiag": "",
[2025-11-22 03:07:25]  *** Listing of results directory ***
[2025-11-22 03:07:25] total 1725116
[2025-11-22 03:07:25] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-22 03:07:25] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 10:07 pilot3.tar.gz
[2025-11-22 03:07:25] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 10:09 queuedata.json
[2025-11-22 03:07:25] -rwx------. 1 boincer umatlas     36292 Nov 20 10:11 runpilot2-wrapper.sh
[2025-11-22 03:07:25] -rw-r--r--. 1 boincer umatlas       100 Nov 20 21:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 03:07:25] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 20 21:10 run_atlas
[2025-11-22 03:07:25] -rw-r--r--. 1 boincer umatlas       105 Nov 20 21:10 job.xml
[2025-11-22 03:07:25] -rw-r--r--. 3 boincer umatlas 410508779 Nov 20 21:10 EVNT.47493127._000678.pool.root.1
[2025-11-22 03:07:25] -rw-r--r--. 3 boincer umatlas 410508779 Nov 20 21:10 ATLAS.root_0
[2025-11-22 03:07:25] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 21:10 start_atlas.sh
[2025-11-22 03:07:25] drwxrwx--x. 2 boincer umatlas      4096 Nov 20 21:10 shared
[2025-11-22 03:07:25] -rw-r--r--. 2 boincer umatlas    590097 Nov 20 21:10 input.tar.gz
[2025-11-22 03:07:25] -rw-r--r--. 1 boincer umatlas         0 Nov 20 21:10 boinc_lockfile
[2025-11-22 03:07:25] -rw-r--r--. 1 boincer umatlas      2784 Nov 21 00:00 pandaJob.out
[2025-11-22 03:07:25] -rw-------. 1 boincer umatlas        57 Nov 21 00:00 setup.sh.local
[2025-11-22 03:07:25] -rw-------. 1 boincer umatlas    989817 Nov 21 00:00 agis_schedconf.cvmfs.json
[2025-11-22 03:07:25] -rw-r--r--. 1 boincer umatlas       533 Nov 22 00:56 boinc_task_state.xml
[2025-11-22 03:07:25] -rw-------. 1 boincer umatlas 913047377 Nov 22 02:26 HITS.47523449._006773.pool.root.1
[2025-11-22 03:07:25] -rw-------. 1 boincer umatlas      1075 Nov 22 02:30 memory_monitor_summary.json
[2025-11-22 03:07:25] -rw-------. 1 boincer umatlas   1526164 Nov 22 02:30 agis_ddmendpoints.agis.ALL.json
[2025-11-22 03:07:25] -rw-------. 1 boincer umatlas   2635102 Nov 22 02:31 log.47523449._006773.job.log.tgz.1
[2025-11-22 03:07:25] -rw-------. 1 boincer umatlas      8656 Nov 22 02:32 heartbeat.json
[2025-11-22 03:07:25] -rw-------. 1 boincer umatlas       823 Nov 22 02:32 pilotlog.txt
[2025-11-22 03:07:25] -rw-------. 1 boincer umatlas        95 Nov 22 02:32 pilot_heartbeat.json
[2025-11-22 03:07:25] -rw-------. 1 boincer umatlas  11626567 Nov 22 02:32 log.47523449._006773.job.log.1
[2025-11-22 03:07:25] -rw-------. 1 boincer umatlas       353 Nov 22 02:32 output.list
[2025-11-22 03:07:25] -rw-r--r--. 1 boincer umatlas       620 Nov 22 02:32 runtime_log
[2025-11-22 03:07:25] -rw-------. 1 boincer umatlas  14284800 Nov 22 02:32 result.tar.gz
[2025-11-22 03:07:25] -rw-r--r--. 1 boincer umatlas      9423 Nov 22 02:32 runtime_log.err
[2025-11-22 03:07:25] -rw-------. 1 boincer umatlas       791 Nov 22 02:32 prVMDm7ULg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmdqGKDmikE2vm.diag
[2025-11-22 03:07:25] -rw-r--r--. 1 boincer umatlas      6614 Nov 22 03:04 init_data.xml
[2025-11-22 03:07:25] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 03:07 boinc_mmap_file
[2025-11-22 03:07:25] -rw-r--r--. 1 boincer umatlas        29 Nov 22 03:07 wrapper_checkpoint.txt
[2025-11-22 03:07:25] -rw-r--r--. 1 boincer umatlas     24041 Nov 22 03:07 stderr.txt
[2025-11-22 03:07:25] HITS file was successfully produced:
[2025-11-22 03:07:25] -rw-------. 1 boincer umatlas 913047377 Nov 22 02:26 shared/HITS.pool.root.1
[2025-11-22 03:07:25]  *** Contents of shared directory: ***
[2025-11-22 03:07:25] total 1307092
[2025-11-22 03:07:25] -rw-r--r--. 3 boincer umatlas 410508779 Nov 20 21:10 ATLAS.root_0
[2025-11-22 03:07:25] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 21:10 start_atlas.sh
[2025-11-22 03:07:25] -rw-r--r--. 2 boincer umatlas    590097 Nov 20 21:10 input.tar.gz
[2025-11-22 03:07:25] -rw-------. 1 boincer umatlas 913047377 Nov 22 02:26 HITS.pool.root.1
[2025-11-22 03:07:25] -rw-------. 1 boincer umatlas  14284800 Nov 22 02:32 result.tar.gz
03:07:27 (2426216): run_atlas exited; CPU time 329556.566183
03:07:27 (2426216): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN