Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:14:38 (29929): wrapper (7.7.26015): starting
04:14:38 (29929): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 04:14:38] Arguments: --nthreads 8
[2025-11-24 04:14:38] Threads: 8
[2025-11-24 04:14:38] Checking for CVMFS
[2025-11-24 04:14:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 04:14:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 04:14:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 04:14:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 04:14:41] 2.11.2.0 11478 281886 142496 153230 3 84 17397641 25165824 4631 130560 2 140119083 99.880 77643915 3235 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 04:14:41] CVMFS is ok
[2025-11-24 04:14:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 04:14:41] Checking for apptainer binary...
[2025-11-24 04:14:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 04:14:41] Running /usr/bin/apptainer --version
[2025-11-24 04:14:41] apptainer version 1.3.2-1.el7
[2025-11-24 04:14:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 04:15:02] cg-vwn355.simple-grid.lan
[2025-11-24 04:15:02] apptainer works
[2025-11-24 04:15:02] Set ATHENA_PROC_NUMBER=8
[2025-11-24 04:15:02] Set ATHENA_CORE_NUMBER=8
[2025-11-24 04:15:02] Starting ATLAS job with PandaID=6893870510
[2025-11-24 04:15:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 02:08:19]  *** The last 200 lines of the pilot log: ***
[2025-11-25 02:08:19] 2025-11-25 01:07:22,133 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:08:19] 2025-11-25 01:07:22,354 | INFO     | time since job start (78510s) is within the limit (172800.0s)
[2025-11-25 02:08:19] 2025-11-25 01:07:24,365 | INFO     | time since job start (78512s) is within the limit (172800.0s)
[2025-11-25 02:08:19] 2025-11-25 01:07:24,651 | INFO     | monitor loop #5286: job 0:6893870510 is in state 'finished'
[2025-11-25 02:08:19] 2025-11-25 01:07:24,652 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:08:19] 2025-11-25 01:07:26,371 | INFO     | time since job start (78514s) is within the limit (172800.0s)
[2025-11-25 02:08:19] 2025-11-25 01:07:27,169 | INFO     | monitor loop #5287: job 0:6893870510 is in state 'finished'
[2025-11-25 02:08:19] 2025-11-25 01:07:27,169 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:08:19] 2025-11-25 01:07:28,380 | INFO     | time since job start (78516s) is within the limit (172800.0s)
[2025-11-25 02:08:19] 2025-11-25 01:07:29,673 | INFO     | monitor loop #5288: job 0:6893870510 is in state 'finished'
[2025-11-25 02:08:19] 2025-11-25 01:07:29,673 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:08:19] 2025-11-25 01:07:30,389 | INFO     | time since job start (78518s) is within the limit (172800.0s)
[2025-11-25 02:08:19] 2025-11-25 01:07:32,178 | INFO     | monitor loop #5289: job 0:6893870510 is in state 'finished'
[2025-11-25 02:08:19] 2025-11-25 01:07:32,178 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:08:19] 2025-11-25 01:07:32,396 | INFO     | time since job start (78520s) is within the limit (172800.0s)
[2025-11-25 02:08:19] 2025-11-25 01:07:34,139 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 02:08:19] 2025-11-25 01:07:34,141 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 02:08:19] 2025-11-25 01:07:34,142 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6893870510/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 02:08:19] 2025-11-25 01:07:34,143 | INFO     | extracted standard info from prmon json
[2025-11-25 02:08:19] 2025-11-25 01:07:34,143 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 02:08:19] 2025-11-25 01:07:34,143 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 02:08:19] 2025-11-25 01:07:34,169 | INFO     | fitting pss+swap vs Time
[2025-11-25 02:08:19] 2025-11-25 01:07:34,171 | INFO     | sum of square deviations: 645732069128.9994
[2025-11-25 02:08:19] 2025-11-25 01:07:34,229 | INFO     | sum of deviations: 1877500720110.9153
[2025-11-25 02:08:19] 2025-11-25 01:07:34,229 | INFO     | mean x: 1763993780.999217
[2025-11-25 02:08:19] 2025-11-25 01:07:34,230 | INFO     | mean y: 2828951.9177760375
[2025-11-25 02:08:19] 2025-11-25 01:07:34,230 | INFO     | intersect: -5126077838.424056
[2025-11-25 02:08:19] 2025-11-25 01:07:34,231 | INFO     | chi2: 29.63647865715531
[2025-11-25 02:08:19] 2025-11-25 01:07:34,233 | INFO     | sum of square deviations: 638177191063.9875
[2025-11-25 02:08:19] 2025-11-25 01:07:34,289 | INFO     | sum of deviations: 2297781884111.706
[2025-11-25 02:08:19] 2025-11-25 01:07:34,290 | INFO     | mean x: 1763993628.5031447
[2025-11-25 02:08:19] 2025-11-25 01:07:34,290 | INFO     | mean y: 2837434.572327044
[2025-11-25 02:08:19] 2025-11-25 01:07:34,290 | INFO     | intersect: -6348490472.501987
[2025-11-25 02:08:19] 2025-11-25 01:07:34,292 | INFO     | chi2: 26.31615577545627
[2025-11-25 02:08:19] 2025-11-25 01:07:34,292 | INFO     | current chi2=26.31615577545627 (change=11.203499984291803 %)
[2025-11-25 02:08:19] 2025-11-25 01:07:34,292 | INFO     | right removable region: 1271
[2025-11-25 02:08:19] 2025-11-25 01:07:34,294 | INFO     | sum of square deviations: 638176412703.9869
[2025-11-25 02:08:19] 2025-11-25 01:07:34,345 | INFO     | sum of deviations: 1341321145731.1846
[2025-11-25 02:08:19] 2025-11-25 01:07:34,345 | INFO     | mean x: 1763993933.5031447
[2025-11-25 02:08:19] 2025-11-25 01:07:34,345 | INFO     | mean y: 2839773.4512578617
[2025-11-25 02:08:19] 2025-11-25 01:07:34,345 | INFO     | intersect: -3704728097.827597
[2025-11-25 02:08:19] 2025-11-25 01:07:34,347 | INFO     | chi2: 24.91642763282095
[2025-11-25 02:08:19] 2025-11-25 01:07:34,347 | INFO     | current chi2=24.91642763282095 (change=15.92649072427762 %)
[2025-11-25 02:08:19] 2025-11-25 01:07:34,347 | INFO     | left removable region: 10
[2025-11-25 02:08:19] 2025-11-25 01:07:34,349 | INFO     | sum of square deviations: 621762832080.8218
[2025-11-25 02:08:19] 2025-11-25 01:07:34,404 | INFO     | sum of deviations: 1413660263879.6694
[2025-11-25 02:08:19] 2025-11-25 01:07:34,404 | INFO     | mean x: 1763993903.0118954
[2025-11-25 02:08:19] 2025-11-25 01:07:34,404 | INFO     | mean y: 2859202.4885011897
[2025-11-25 02:08:19] 2025-11-25 01:07:34,405 | INFO     | intersect: -4007814896.6184306
[2025-11-25 02:08:19] 2025-11-25 01:07:34,406 | INFO     | chi2: 17.71593251054151
[2025-11-25 02:08:19] 2025-11-25 01:07:34,407 | INFO     | current memory leak: 2.27 B/s (using 1261 data points, chi2=17.72)
[2025-11-25 02:08:19] 2025-11-25 01:07:34,408 | INFO     | could have reported an average CPU frequency of 1999 MHz (43 samples)
[2025-11-25 02:08:19] 2025-11-25 01:07:34,408 | INFO     | ..............................
[2025-11-25 02:08:19] 2025-11-25 01:07:34,408 | INFO     | . Timing measurements:
[2025-11-25 02:08:19] 2025-11-25 01:07:34,409 | INFO     | . get job = 0 s
[2025-11-25 02:08:19] 2025-11-25 01:07:34,409 | INFO     | . initial setup = 11 s
[2025-11-25 02:08:19] 2025-11-25 01:07:34,409 | INFO     | . payload setup = 162 s
[2025-11-25 02:08:19] 2025-11-25 01:07:34,409 | INFO     | . stage-in = 0 s
[2025-11-25 02:08:19] 2025-11-25 01:07:34,409 | INFO     | . payload execution = 78029 s
[2025-11-25 02:08:19] 2025-11-25 01:07:34,409 | INFO     | . stage-out = 9 s
[2025-11-25 02:08:19] 2025-11-25 01:07:34,409 | INFO     | . log creation = 2 s
[2025-11-25 02:08:19] 2025-11-25 01:07:34,409 | INFO     | ..............................
[2025-11-25 02:08:19] 2025-11-25 01:07:34,419 | INFO     | time since job start (78522s) is within the limit (172800.0s)
[2025-11-25 02:08:19] 2025-11-25 01:07:34,691 | INFO     | 
[2025-11-25 02:08:19] 2025-11-25 01:07:34,691 | INFO     | job summary report
[2025-11-25 02:08:19] 2025-11-25 01:07:34,692 | INFO     | --------------------------------------------------
[2025-11-25 02:08:19] 2025-11-25 01:07:34,692 | INFO     | PanDA job id: 6893870510
[2025-11-25 02:08:19] 2025-11-25 01:07:34,692 | INFO     | task id: 47523449
[2025-11-25 02:08:19] 2025-11-25 01:07:34,692 | INFO     | errors: (none)
[2025-11-25 02:08:19] 2025-11-25 01:07:34,692 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 02:08:19] 2025-11-25 01:07:34,692 | INFO     | pilot state: finished 
[2025-11-25 02:08:19] 2025-11-25 01:07:34,692 | INFO     | transexitcode: 0
[2025-11-25 02:08:19] 2025-11-25 01:07:34,692 | INFO     | exeerrorcode: 0
[2025-11-25 02:08:19] 2025-11-25 01:07:34,693 | INFO     | exeerrordiag: 
[2025-11-25 02:08:19] 2025-11-25 01:07:34,693 | INFO     | exitcode: 0
[2025-11-25 02:08:19] 2025-11-25 01:07:34,693 | INFO     | exitmsg: OK
[2025-11-25 02:08:19] 2025-11-25 01:07:34,693 | INFO     | cpuconsumptiontime: 337210 s
[2025-11-25 02:08:19] 2025-11-25 01:07:34,693 | INFO     | nevents: 1000
[2025-11-25 02:08:19] 2025-11-25 01:07:34,693 | INFO     | neventsw: 0
[2025-11-25 02:08:19] 2025-11-25 01:07:34,693 | INFO     | pid: 7881
[2025-11-25 02:08:19] 2025-11-25 01:07:34,693 | INFO     | pgrp: 7881
[2025-11-25 02:08:19] 2025-11-25 01:07:34,693 | INFO     | corecount: 8
[2025-11-25 02:08:19] 2025-11-25 01:07:34,693 | INFO     | event service: False
[2025-11-25 02:08:19] 2025-11-25 01:07:34,694 | INFO     | sizes: {0: 2298579, 1: 2298834, 12: 2298834, 23: 2298862, 34: 2298890, 44: 2298918, 55: 2299074, 66: 2299102, 77: 2299130, 87: 2299186, 98: 2299784, 109: 2299784, 
[2025-11-25 02:08:19] 2025-11-25 01:07:34,694 | INFO     | --------------------------------------------------
[2025-11-25 02:08:19] 2025-11-25 01:07:34,694 | INFO     | 
[2025-11-25 02:08:19] 2025-11-25 01:07:34,694 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-11-25 02:08:19] 2025-11-25 01:07:35,209 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 02:08:19] 2025-11-25 01:07:35,209 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 02:08:19] 2025-11-25 01:07:35,210 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 02:08:19] 2025-11-25 01:07:35,210 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 02:08:19] 2025-11-25 01:07:35,210 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 02:08:19] 2025-11-25 01:07:35,210 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 02:08:19] 2025-11-25 01:07:35,210 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 02:08:19] 2025-11-25 01:07:35,210 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 02:08:19] 2025-11-25 01:07:35,210 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 02:08:19] 2025-11-25 01:07:35,210 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 02:08:19] 2025-11-25 01:07:35,210 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 02:08:19] 2025-11-25 01:07:35,211 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 02:08:19] 2025-11-25 01:07:35,211 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 02:08:19] 2025-11-25 01:07:35,211 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 02:08:19] 2025-11-25 01:07:35,211 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 02:08:19] 2025-11-25 01:07:35,211 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 02:08:19] 2025-11-25 01:07:35,211 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 02:08:19] 2025-11-25 01:07:35,211 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 02:08:19] 2025-11-25 01:07:35,211 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 02:08:19] 2025-11-25 01:07:35,211 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 02:08:19] 2025-11-25 01:07:35,212 | INFO     | job 6893870510 has completed (purged errors)
[2025-11-25 02:08:19] 2025-11-25 01:07:35,212 | INFO     | overall cleanup function is called
[2025-11-25 02:08:19] 2025-11-25 01:07:36,234 | INFO     | --- collectZombieJob: --- 10, [7881]
[2025-11-25 02:08:19] 2025-11-25 01:07:36,234 | INFO     | zombie collector waiting for pid 7881
[2025-11-25 02:08:19] 2025-11-25 01:07:36,235 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 02:08:19] 2025-11-25 01:07:36,235 | INFO     | collected zombie processes
[2025-11-25 02:08:19] 2025-11-25 01:07:36,235 | INFO     | will attempt to kill all subprocesses of pid=7881
[2025-11-25 02:08:19] 2025-11-25 01:07:36,336 | INFO     | process IDs to be killed: [7881] (in reverse order)
[2025-11-25 02:08:19] 2025-11-25 01:07:37,496 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 02:08:19] 2025-11-25 01:07:37,496 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 02:08:19] 2025-11-25 01:07:37,498 | INFO     | did not find any defunct processes belonging to 7881
[2025-11-25 02:08:19] 2025-11-25 01:07:37,500 | INFO     | did not find any defunct processes belonging to 7881
[2025-11-25 02:08:19] 2025-11-25 01:07:37,544 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 02:08:19] 2025-11-25 01:07:37,545 | INFO     | ready for new job
[2025-11-25 02:08:19] 2025-11-25 01:07:37,545 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 02:08:19] 2025-11-25 01:07:37,550 | INFO     | ***************************************
[2025-11-25 02:08:19] 2025-11-25 01:07:37,550 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 02:08:19] 2025-11-25 01:07:37,550 | INFO     | ***************************************
[2025-11-25 02:08:19] 2025-11-25 01:07:37,550 | INFO     | 
[2025-11-25 02:08:19] 2025-11-25 01:07:37,551 | INFO     | pilot is running in a VM
[2025-11-25 02:08:19] 2025-11-25 01:07:37,551 | INFO     | architecture information:
[2025-11-25 02:08:19] 2025-11-25 01:07:37,568 | INFO     | executing command: cat /etc/os-release
[2025-11-25 02:08:19] 2025-11-25 01:07:37,835 | INFO     | cat /etc/os-release:
[2025-11-25 02:08:19] NAME="CentOS Linux"
[2025-11-25 02:08:19] VERSION="7 (Core)"
[2025-11-25 02:08:19] ID="centos"
[2025-11-25 02:08:19] ID_LIKE="rhel fedora"
[2025-11-25 02:08:19] VERSION_ID="7"
[2025-11-25 02:08:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 02:08:19] ANSI_COLOR="0;31"
[2025-11-25 02:08:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 02:08:19] HOME_URL="https://www.centos.org/"
[2025-11-25 02:08:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 02:08:19] 
[2025-11-25 02:08:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 02:08:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 02:08:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 02:08:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 02:08:19] 
[2025-11-25 02:08:19] 2025-11-25 01:07:37,835 | INFO     | ***************************************
[2025-11-25 02:08:19] 2025-11-25 01:07:38,338 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-11-25 02:08:19] 2025-11-25 01:07:38,616 | INFO     | sufficient remaining disk space (493125369856 B)
[2025-11-25 02:08:19] 2025-11-25 01:07:38,616 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 02:08:19] 2025-11-25 01:07:38,616 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 02:08:19] 2025-11-25 01:07:38,616 | INFO     | update_server=False
[2025-11-25 02:08:19] 2025-11-25 01:07:38,617 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 02:08:19] 2025-11-25 01:07:38,617 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 02:08:19] 2025-11-25 01:07:38,617 | INFO     | aborting loop
[2025-11-25 02:08:19] 2025-11-25 01:07:38,621 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 02:08:19] 2025-11-25 01:07:38,624 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 02:08:19] 2025-11-25 01:07:38,628 | INFO     | all job control threads have been joined
[2025-11-25 02:08:19] 2025-11-25 01:07:38,682 | INFO     | all payload control threads have been joined
[2025-11-25 02:08:19] 2025-11-25 01:07:39,137 | INFO     | all data control threads have been joined
[2025-11-25 02:08:19] 2025-11-25 01:07:39,546 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 02:08:19] 2025-11-25 01:07:39,623 | INFO     | [job] job monitor thread has finished
[2025-11-25 02:08:19] 2025-11-25 01:07:39,625 | INFO     | [job] retrieve thread has finished
[2025-11-25 02:08:19] 2025-11-25 01:07:39,634 | INFO     | [job] control thread has finished
[2025-11-25 02:08:19] 2025-11-25 01:07:39,654 | INFO     | [job] validate thread has finished
[2025-11-25 02:08:19] 2025-11-25 01:07:39,688 | INFO     | [payload] control thread has finished
[2025-11-25 02:08:19] 2025-11-25 01:07:39,718 | INFO     | [data] copytool_in thread has finished
[2025-11-25 02:08:19] 2025-11-25 01:07:39,770 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 02:08:19] 2025-11-25 01:07:39,989 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 02:08:19] 2025-11-25 01:07:40,143 | INFO     | [data] control thread has finished
[2025-11-25 02:08:19] 2025-11-25 01:07:40,174 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 02:08:19] 2025-11-25 01:07:40,468 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 02:08:19] 2025-11-25 01:07:40,552 | INFO     | [job] queue monitor thread has finished
[2025-11-25 02:08:19] 2025-11-25 01:07:40,633 | INFO     | [data] copytool_out thread has finished
[2025-11-25 02:08:19] 2025-11-25 01:07:40,756 | INFO     | [payload] failed_post thread has finished
[2025-11-25 02:08:19] 2025-11-25 01:07:40,885 | INFO     | [payload] validate_post thread has finished
[2025-11-25 02:08:19] 2025-11-25 01:07:42,630 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 02:08:19] 2025-11-25 01:08:07,604 | INFO     | PID=1323 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-25 02:08:19] 2025-11-25 01:08:07,605 | INFO     | .. there are 2 such processes running
[2025-11-25 02:08:19] 2025-11-25 01:08:07,606 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 02:08:19] 2025-11-25 01:08:07,606 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 02:08:19] 2025-11-25 01:08:07,606 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 02:08:19] 2025-11-25 01:08:08,559 | INFO     | [monitor] cgroup control has ended
[2025-11-25 02:08:19] 2025-11-25 01:08:08,749 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139945142032192)>', '<ExcThread(monitor, started 139944253187840)>']
[2025-11-25 02:08:19] 2025-11-25 01:08:09,618 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 02:08:19] 2025-11-25 01:08:09,618 | INFO     | [monitor] control thread has ended
[2025-11-25 02:08:19] 2025-11-25 01:08:13,775 | INFO     | all workflow threads have been joined
[2025-11-25 02:08:19] 2025-11-25 01:08:13,775 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 02:08:19] 2025-11-25 01:08:13,776 | INFO     | traces error code: 0
[2025-11-25 02:08:19] 2025-11-25 01:08:13,776 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 02:08:19] 2025-11-25 01:08:14,125 [wrapper] ==== pilot stdout END ====
[2025-11-25 02:08:19] 2025-11-25 01:08:14,228 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 02:08:19] 2025-11-25 01:08:14,330 [wrapper] pilotpid: 1323
[2025-11-25 02:08:19] 2025-11-25 01:08:14,436 [wrapper] Pilot exit status: 0
[2025-11-25 02:08:19] 2025-11-25 01:08:14,829 [wrapper] pandaids: 6893870510
[2025-11-25 02:08:19] 2025-11-25 01:08:15,761 [wrapper] cleanup supervisor_pilot 21305 1324
[2025-11-25 02:08:19] 2025-11-25 01:08:15,827 [wrapper] Test setup, not cleaning
[2025-11-25 02:08:19] 2025-11-25 01:08:15,940 [wrapper] apfmon messages muted
[2025-11-25 02:08:19] 2025-11-25 01:08:16,044 [wrapper] ==== wrapper stdout END ====
[2025-11-25 02:08:19] 2025-11-25 01:08:16,168 [wrapper] ==== wrapper stderr END ====
[2025-11-25 02:08:19]  *** Error codes and diagnostics ***
[2025-11-25 02:08:19]     "exeErrorCode": 0,
[2025-11-25 02:08:19]     "exeErrorDiag": "",
[2025-11-25 02:08:19]     "pilotErrorCode": 0,
[2025-11-25 02:08:19]     "pilotErrorDiag": "",
[2025-11-25 02:08:19]  *** Listing of results directory ***
[2025-11-25 02:08:19] total 1325360
[2025-11-25 02:08:19] -rw-r--r--. 1 boinc boinc    576529 Nov 20 15:50 pilot3.tar.gz
[2025-11-25 02:08:19] -rw-r--r--. 1 boinc boinc      5112 Nov 20 15:56 queuedata.json
[2025-11-25 02:08:19] -rwx------. 1 boinc boinc     36292 Nov 20 15:56 runpilot2-wrapper.sh
[2025-11-25 02:08:19] -rw-r--r--. 1 boinc boinc       100 Nov 24 04:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 02:08:19] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 04:14 run_atlas
[2025-11-25 02:08:19] -rw-r--r--. 1 boinc boinc       105 Nov 24 04:14 job.xml
[2025-11-25 02:08:19] -rw-r--r--. 2 boinc boinc 410274326 Nov 24 04:14 EVNT.47493127._000658.pool.root.1
[2025-11-25 02:08:19] drwxrwx--x. 2 boinc boinc        68 Nov 24 04:14 shared
[2025-11-25 02:08:19] -rw-r--r--. 2 boinc boinc    590098 Nov 24 04:14 input.tar.gz
[2025-11-25 02:08:19] -rw-r--r--. 1 boinc boinc      6392 Nov 24 04:14 init_data.xml
[2025-11-25 02:08:19] -rw-r--r--. 2 boinc boinc     15847 Nov 24 04:14 start_atlas.sh
[2025-11-25 02:08:19] -rw-r--r--. 1 boinc boinc         0 Nov 24 04:14 boinc_lockfile
[2025-11-25 02:08:19] -rw-r--r--. 1 boinc boinc      2785 Nov 24 04:15 pandaJob.out
[2025-11-25 02:08:19] -rw-------. 1 boinc boinc    989786 Nov 24 04:18 agis_schedconf.cvmfs.json
[2025-11-25 02:08:19] drwx------. 5 boinc boinc      4096 Nov 24 04:18 pilot3
[2025-11-25 02:08:19] -rw-r--r--. 1 boinc boinc       533 Nov 25 01:32 boinc_task_state.xml
[2025-11-25 02:08:19] -rw-------. 1 boinc boinc 917334231 Nov 25 02:04 HITS.47523449._006577.pool.root.1
[2025-11-25 02:08:19] -rw-------. 1 boinc boinc      1033 Nov 25 02:05 memory_monitor_summary.json
[2025-11-25 02:08:19] -rw-------. 1 boinc boinc   1516227 Nov 25 02:05 agis_ddmendpoints.agis.ALL.json
[2025-11-25 02:08:19] -rw-------. 1 boinc boinc   2393665 Nov 25 02:05 log.47523449._006577.job.log.tgz.1
[2025-11-25 02:08:19] -rw-------. 1 boinc boinc      8629 Nov 25 02:07 heartbeat.json
[2025-11-25 02:08:19] -rw-r--r--. 1 boinc boinc        29 Nov 25 02:08 wrapper_checkpoint.txt
[2025-11-25 02:08:19] -rw-r--r--. 1 boinc boinc      8192 Nov 25 02:08 boinc_mmap_file
[2025-11-25 02:08:19] -rw-------. 1 boinc boinc        95 Nov 25 02:08 pilot_heartbeat.json
[2025-11-25 02:08:19] -rw-------. 1 boinc boinc      4883 Nov 25 02:08 pilotlog.txt
[2025-11-25 02:08:19] -rw-------. 1 boinc boinc  10433663 Nov 25 02:08 log.47523449._006577.job.log.1
[2025-11-25 02:08:19] -rw-------. 1 boinc boinc       353 Nov 25 02:08 output.list
[2025-11-25 02:08:19] -rw-r--r--. 1 boinc boinc       620 Nov 25 02:08 runtime_log
[2025-11-25 02:08:19] -rw-------. 1 boinc boinc  12851200 Nov 25 02:08 result.tar.gz
[2025-11-25 02:08:19] -rw-r--r--. 1 boinc boinc      8817 Nov 25 02:08 runtime_log.err
[2025-11-25 02:08:19] -rw-------. 1 boinc boinc       662 Nov 25 02:08 agVMDmeGLg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmdpGKDmxwdasm.diag
[2025-11-25 02:08:19] -rw-r--r--. 1 boinc boinc     21433 Nov 25 02:08 stderr.txt
[2025-11-25 02:08:19] HITS file was successfully produced:
[2025-11-25 02:08:19] -rw-------. 1 boinc boinc 917334231 Nov 25 02:04 shared/HITS.pool.root.1
[2025-11-25 02:08:19]  *** Contents of shared directory: ***
[2025-11-25 02:08:19] total 1309644
[2025-11-25 02:08:19] -rw-r--r--. 2 boinc boinc 410274326 Nov 24 04:14 ATLAS.root_0
[2025-11-25 02:08:19] -rw-r--r--. 2 boinc boinc    590098 Nov 24 04:14 input.tar.gz
[2025-11-25 02:08:19] -rw-r--r--. 2 boinc boinc     15847 Nov 24 04:14 start_atlas.sh
[2025-11-25 02:08:19] -rw-------. 1 boinc boinc 917334231 Nov 25 02:04 HITS.pool.root.1
[2025-11-25 02:08:19] -rw-------. 1 boinc boinc  12851200 Nov 25 02:08 result.tar.gz
02:08:21 (29929): run_atlas exited; CPU time 337423.448535
02:08:21 (29929): called boinc_finish(0)

</stderr_txt>
]]>

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