Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:56:02 (3685602): wrapper (7.7.26015): starting
02:56:02 (3685602): wrapper: running run_atlas (--nthreads 3)
[2025-11-21 02:56:02] Arguments: --nthreads 3
[2025-11-21 02:56:02] Threads: 3
[2025-11-21 02:56:02] Checking for CVMFS
[2025-11-21 02:56:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 02:56:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 02:56:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 02:56:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 02:56:02] 2.9.2.0 16720 783 69624 153103 2 88 34446409 36864000 0 130560 0 11025123 99.999 16510 713 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-21 02:56:02] CVMFS is ok
[2025-11-21 02:56:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 02:56:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 02:56:02] Further information can be found at the LHC@home message board.
[2025-11-21 02:56:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 02:56:02] Checking for apptainer binary...
[2025-11-21 02:56:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 02:56:02] Running /usr/bin/apptainer --version
[2025-11-21 02:56:02] apptainer version 1.4.1-1.1
[2025-11-21 02:56:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 02:56:02] thA335
[2025-11-21 02:56:02] apptainer works
[2025-11-21 02:56:02] Set ATHENA_PROC_NUMBER=3
[2025-11-21 02:56:02] Set ATHENA_CORE_NUMBER=3
[2025-11-21 02:56:02] Starting ATLAS job with PandaID=6893850467
[2025-11-21 02:56:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 03:00:20]  *** The last 200 lines of the pilot log: ***
[2025-11-21 03:00:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 03:00:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 03:00:20] 
[2025-11-21 03:00:20] 2025-11-21 01:59:28,367 | INFO     | ***************************************
[2025-11-21 03:00:20] 2025-11-21 01:59:28,870 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-21 03:00:20] 2025-11-21 01:59:28,884 | INFO     | sufficient remaining disk space (827196440576 B)
[2025-11-21 03:00:20] 2025-11-21 01:59:28,884 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 03:00:20] 2025-11-21 01:59:28,885 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 03:00:20] 2025-11-21 01:59:28,885 | INFO     | update_server=False
[2025-11-21 03:00:20] 2025-11-21 01:59:28,885 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 03:00:20] 2025-11-21 01:59:28,885 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 03:00:20] 2025-11-21 01:59:28,885 | INFO     | aborting loop
[2025-11-21 03:00:20] 2025-11-21 01:59:29,142 | INFO     | all job control threads have been joined
[2025-11-21 03:00:20] 2025-11-21 01:59:29,871 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 03:00:20] 2025-11-21 01:59:29,890 | INFO     | [job] retrieve thread has finished
[2025-11-21 03:00:20] 2025-11-21 01:59:29,891 | INFO     | [job] job monitor thread has finished
[2025-11-21 03:00:20] 2025-11-21 01:59:29,904 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 03:00:20] 2025-11-21 01:59:29,971 | INFO     | all data control threads have been joined
[2025-11-21 03:00:20] 2025-11-21 01:59:30,148 | INFO     | [job] control thread has finished
[2025-11-21 03:00:20] 2025-11-21 01:59:30,165 | INFO     | [payload] failed_post thread has finished
[2025-11-21 03:00:20] 2025-11-21 01:59:30,287 | INFO     | all payload control threads have been joined
[2025-11-21 03:00:20] 2025-11-21 01:59:30,890 | INFO     | [payload] validate_post thread has finished
[2025-11-21 03:00:20] 2025-11-21 01:59:30,977 | INFO     | [data] control thread has finished
[2025-11-21 03:00:20] 2025-11-21 01:59:31,075 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 03:00:20] 2025-11-21 01:59:31,107 | INFO     | [data] copytool_in thread has finished
[2025-11-21 03:00:20] 2025-11-21 01:59:31,269 | INFO     | [job] validate thread has finished
[2025-11-21 03:00:20] 2025-11-21 01:59:31,293 | INFO     | [payload] control thread has finished
[2025-11-21 03:00:20] 2025-11-21 01:59:31,295 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 03:00:20] 2025-11-21 01:59:31,334 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 03:00:20] 2025-11-21 01:59:31,875 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 03:00:20] 2025-11-21 01:59:31,877 | INFO     | [data] copytool_out thread has finished
[2025-11-21 03:00:20] 2025-11-21 01:59:31,968 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 03:00:20] 2025-11-21 01:59:32,879 | INFO     | [job] queue monitor thread has finished
[2025-11-21 03:00:20] 2025-11-21 01:59:35,975 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 03:00:20] 2025-11-21 01:59:59,403 | INFO     | PID=3689338 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 03:00:20] 2025-11-21 01:59:59,403 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 03:00:20] 2025-11-21 01:59:59,403 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 03:00:20] 2025-11-21 01:59:59,403 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 03:00:20] 2025-11-21 02:00:14,567 | INFO     | [monitor] cgroup control has ended
[2025-11-21 03:00:20] 2025-11-21 02:00:15,730 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140630537099072)>', '<ExcThread(monitor, started 140629870880512)>']
[2025-11-21 03:00:20] 2025-11-21 02:00:16,489 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 03:00:20] 2025-11-21 02:00:16,489 | INFO     | [monitor] control thread has ended
[2025-11-21 03:00:20] 2025-11-21 02:00:20,756 | INFO     | all workflow threads have been joined
[2025-11-21 03:00:20] 2025-11-21 02:00:20,756 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 03:00:20] 2025-11-21 02:00:20,757 | INFO     | traces error code: 0
[2025-11-21 03:00:20] 2025-11-21 02:00:20,758 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 03:00:20] 2025-11-21 02:00:20,804 [wrapper] ==== pilot stdout END ====
[2025-11-21 03:00:20] 2025-11-21 02:00:20,808 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 03:00:20] 2025-11-21 02:00:20,811 [wrapper] pilotpid: 3689338
[2025-11-21 03:00:20] 2025-11-21 02:00:20,814 [wrapper] Pilot exit status: 0
[2025-11-21 03:00:20] 2025-11-21 02:00:20,821 [wrapper] pandaids: 6893850467
[2025-11-21 03:00:20] 2025-11-21 02:00:20,837 [wrapper] cleanup supervisor_pilot 3689344 3689339
[2025-11-21 03:00:20] 2025-11-21 02:00:20,839 [wrapper] Test setup, not cleaning
[2025-11-21 03:00:20] 2025-11-21 02:00:20,842 [wrapper] apfmon messages muted
[2025-11-21 03:00:20] 2025-11-21 02:00:20,844 [wrapper] ==== wrapper stdout END ====
[2025-11-21 03:00:20] 2025-11-21 02:00:20,847 [wrapper] ==== wrapper stderr END ====
[2025-11-21 03:00:20]  *** Error codes and diagnostics ***
[2025-11-21 03:00:20]     "exeErrorCode": 65,
[2025-11-21 03:00:20]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 03:00:20]     "pilotErrorCode": 1305,
[2025-11-21 03:00:20]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 03:00:20]  *** Listing of results directory ***
[2025-11-21 03:00:20] total 402900
[2025-11-21 03:00:20] -rw-r--r-- 1 boinc boinc    576529 Nov 20 12:09 pilot3.tar.gz
[2025-11-21 03:00:20] -rw-r--r-- 1 boinc boinc      5112 Nov 20 12:23 queuedata.json
[2025-11-21 03:00:20] -rwx------ 1 boinc boinc     36292 Nov 20 12:23 runpilot2-wrapper.sh
[2025-11-21 03:00:20] -rw-r--r-- 1 boinc boinc       100 Nov 21 02:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 03:00:20] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 02:56 run_atlas
[2025-11-21 03:00:20] -rw-r--r-- 1 boinc boinc       105 Nov 21 02:56 job.xml
[2025-11-21 03:00:20] -rw-r--r-- 2 boinc boinc 408376704 Nov 21 02:56 EVNT.47493127._000338.pool.root.1
[2025-11-21 03:00:20] -rw-r--r-- 2 boinc boinc    590104 Nov 21 02:56 input.tar.gz
[2025-11-21 03:00:20] -rw-r--r-- 2 boinc boinc     15847 Nov 21 02:56 start_atlas.sh
[2025-11-21 03:00:20] drwxrwx--x 2 boinc boinc      4096 Nov 21 02:56 shared
[2025-11-21 03:00:20] -rw-r--r-- 1 boinc boinc         0 Nov 21 02:56 boinc_setup_complete
[2025-11-21 03:00:20] -rw-r--r-- 1 boinc boinc      6194 Nov 21 02:56 init_data.xml
[2025-11-21 03:00:20] -rw-r--r-- 1 boinc boinc         0 Nov 21 02:56 boinc_lockfile
[2025-11-21 03:00:20] -rw-r--r-- 1 boinc boinc      2783 Nov 21 02:56 pandaJob.out
[2025-11-21 03:00:20] -rw------- 1 boinc boinc    989817 Nov 21 02:56 agis_schedconf.cvmfs.json
[2025-11-21 03:00:20] -rw------- 1 boinc boinc   1526164 Nov 21 02:56 agis_ddmendpoints.agis.ALL.json
[2025-11-21 03:00:20] drwx------ 5 boinc boinc      4096 Nov 21 02:56 pilot3
[2025-11-21 03:00:20] -rw-r--r-- 1 boinc boinc       523 Nov 21 02:57 boinc_task_state.xml
[2025-11-21 03:00:20] -rw------- 1 boinc boinc       956 Nov 21 02:57 memory_monitor_summary.json
[2025-11-21 03:00:20] -rw------- 1 boinc boinc     55645 Nov 21 02:57 log.47523449._003371.job.log.tgz.1
[2025-11-21 03:00:20] -rw------- 1 boinc boinc        95 Nov 21 02:59 pilot_heartbeat.json
[2025-11-21 03:00:20] -rw------- 1 boinc boinc      8400 Nov 21 02:59 heartbeat.json
[2025-11-21 03:00:20] -rw-r--r-- 1 boinc boinc        23 Nov 21 03:00 wrapper_checkpoint.txt
[2025-11-21 03:00:20] -rw-r--r-- 1 boinc boinc      8192 Nov 21 03:00 boinc_mmap_file
[2025-11-21 03:00:20] -rw------- 1 boinc boinc      4752 Nov 21 03:00 pilotlog.txt
[2025-11-21 03:00:20] -rw------- 1 boinc boinc     93239 Nov 21 03:00 log.47523449._003371.job.log.1
[2025-11-21 03:00:20] -rw------- 1 boinc boinc       186 Nov 21 03:00 output.list
[2025-11-21 03:00:20] -rw-r--r-- 1 boinc boinc       620 Nov 21 03:00 runtime_log
[2025-11-21 03:00:20] -rw------- 1 boinc boinc    163840 Nov 21 03:00 result.tar.gz
[2025-11-21 03:00:20] -rw-r--r-- 1 boinc boinc      8744 Nov 21 03:00 runtime_log.err
[2025-11-21 03:00:20] -rw------- 1 boinc boinc       649 Nov 21 03:00 LhFNDmiwHg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmIXGKDmq53Kfm.diag
[2025-11-21 03:00:20] -rw-r--r-- 1 boinc boinc      8468 Nov 21 03:00 stderr.txt
[2025-11-21 03:00:20] No HITS result produced
[2025-11-21 03:00:20]  *** Contents of shared directory: ***
[2025-11-21 03:00:20] total 399568
[2025-11-21 03:00:20] -rw-r--r-- 2 boinc boinc 408376704 Nov 21 02:56 ATLAS.root_0
[2025-11-21 03:00:20] -rw-r--r-- 2 boinc boinc    590104 Nov 21 02:56 input.tar.gz
[2025-11-21 03:00:20] -rw-r--r-- 2 boinc boinc     15847 Nov 21 02:56 start_atlas.sh
[2025-11-21 03:00:20] -rw------- 1 boinc boinc    163840 Nov 21 03:00 result.tar.gz
03:00:21 (3685602): run_atlas exited; CPU time 31.878934
03:00:21 (3685602): called boinc_finish(0)

</stderr_txt>
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