Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:32:35 (13155): wrapper (7.7.26015): starting
03:32:35 (13155): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 03:32:35] Arguments: --nthreads 8
[2025-11-24 03:32:35] Threads: 8
[2025-11-24 03:32:35] Checking for CVMFS
[2025-11-24 03:32:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 03:32:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 03:32:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 03:32:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 03:32:39] 2.11.2.0 32577 281914 145756 153229 0 117 19038183 25165825 4462 130560 1 123769288 99.848 84008763 3154 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 03:32:39] CVMFS is ok
[2025-11-24 03:32:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 03:32:39] Checking for apptainer binary...
[2025-11-24 03:32:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 03:32:39] Running /usr/bin/apptainer --version
[2025-11-24 03:32:39] apptainer version 1.3.2-1.el7
[2025-11-24 03:32:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 03:32:50] cg-vwn389.simple-grid.lan
[2025-11-24 03:32:50] apptainer works
[2025-11-24 03:32:51] Set ATHENA_PROC_NUMBER=8
[2025-11-24 03:32:51] Set ATHENA_CORE_NUMBER=8
[2025-11-24 03:32:51] Starting ATLAS job with PandaID=6893872253
[2025-11-24 03:32:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/17 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 03:52:20]  *** The last 200 lines of the pilot log: ***
[2025-11-25 03:52:20] 2025-11-25 02:50:59,157 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 03:52:20] 2025-11-25 02:51:00,653 | INFO     | time since job start (87263s) is within the limit (172800.0s)
[2025-11-25 03:52:20] 2025-11-25 02:51:00,654 | INFO     | 87270s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-25 03:52:20] 2025-11-25 02:51:01,669 | INFO     | monitor loop #5875: job 0:6893872253 is in state 'finished'
[2025-11-25 03:52:20] 2025-11-25 02:51:01,669 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 03:52:20] 2025-11-25 02:51:02,660 | INFO     | time since job start (87265s) is within the limit (172800.0s)
[2025-11-25 03:52:20] 2025-11-25 02:51:03,839 | INFO     | PID=16974 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 03:52:20] 2025-11-25 02:51:03,839 | INFO     | .. there are 9 such processes running
[2025-11-25 03:52:20] 2025-11-25 02:51:04,176 | INFO     | monitor loop #5876: job 0:6893872253 is in state 'finished'
[2025-11-25 03:52:20] 2025-11-25 02:51:04,176 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 03:52:20] 2025-11-25 02:51:04,842 | INFO     | time since job start (87267s) is within the limit (172800.0s)
[2025-11-25 03:52:20] 2025-11-25 02:51:06,682 | INFO     | monitor loop #5877: job 0:6893872253 is in state 'finished'
[2025-11-25 03:52:20] 2025-11-25 02:51:06,682 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 03:52:20] 2025-11-25 02:51:06,850 | INFO     | time since job start (87269s) is within the limit (172800.0s)
[2025-11-25 03:52:20] 2025-11-25 02:51:07,872 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 03:52:20] 2025-11-25 02:51:07,873 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 03:52:20] 2025-11-25 02:51:07,875 | INFO     | using path: /var/lib/boinc/slots/17/PanDA_Pilot-6893872253/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 03:52:20] 2025-11-25 02:51:07,876 | INFO     | extracted standard info from prmon json
[2025-11-25 03:52:20] 2025-11-25 02:51:07,876 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 03:52:20] 2025-11-25 02:51:07,876 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 03:52:20] 2025-11-25 02:51:07,904 | INFO     | fitting pss+swap vs Time
[2025-11-25 03:52:20] 2025-11-25 02:51:07,907 | INFO     | sum of square deviations: 889732807679.7483
[2025-11-25 03:52:20] 2025-11-25 02:51:07,971 | INFO     | sum of deviations: 2454760262956.384
[2025-11-25 03:52:20] 2025-11-25 02:51:07,972 | INFO     | mean x: 1763995626.2301197
[2025-11-25 03:52:20] 2025-11-25 02:51:07,972 | INFO     | mean y: 2855765.9957776214
[2025-11-25 03:52:20] 2025-11-25 02:51:07,972 | INFO     | intersect: -4863983278.178451
[2025-11-25 03:52:20] 2025-11-25 02:51:07,974 | INFO     | chi2: 18.41659688209088
[2025-11-25 03:52:20] 2025-11-25 02:51:07,976 | INFO     | sum of square deviations: 880374356032.1571
[2025-11-25 03:52:20] 2025-11-25 02:51:08,053 | INFO     | sum of deviations: 2920537333719.932
[2025-11-25 03:52:20] 2025-11-25 02:51:08,054 | INFO     | mean x: 1763995473.7344632
[2025-11-25 03:52:20] 2025-11-25 02:51:08,054 | INFO     | mean y: 2863354.8721751412
[2025-11-25 03:52:20] 2025-11-25 02:51:08,054 | INFO     | intersect: -5848982058.67858
[2025-11-25 03:52:20] 2025-11-25 02:51:08,056 | INFO     | chi2: 15.226705838448835
[2025-11-25 03:52:20] 2025-11-25 02:51:08,056 | INFO     | current chi2=15.226705838448835 (change=17.320740981978254 %)
[2025-11-25 03:52:20] 2025-11-25 02:51:08,056 | INFO     | right removable region: 1415
[2025-11-25 03:52:20] 2025-11-25 02:51:08,058 | INFO     | sum of square deviations: 880373289752.1576
[2025-11-25 03:52:20] 2025-11-25 02:51:08,137 | INFO     | sum of deviations: 1931822749771.338
[2025-11-25 03:52:20] 2025-11-25 02:51:08,137 | INFO     | mean x: 1763995778.7344632
[2025-11-25 03:52:20] 2025-11-25 02:51:08,137 | INFO     | mean y: 2864284.0381355933
[2025-11-25 03:52:20] 2025-11-25 02:51:08,137 | INFO     | intersect: -3867911005.860977
[2025-11-25 03:52:20] 2025-11-25 02:51:08,139 | INFO     | chi2: 14.894677939376471
[2025-11-25 03:52:20] 2025-11-25 02:51:08,139 | INFO     | current chi2=14.894677939376471 (change=19.123614233741947 %)
[2025-11-25 03:52:20] 2025-11-25 02:51:08,139 | INFO     | left removable region: 10
[2025-11-25 03:52:20] 2025-11-25 02:51:08,142 | INFO     | sum of square deviations: 860015737413.646
[2025-11-25 03:52:20] 2025-11-25 02:51:08,201 | INFO     | sum of deviations: 2348602294981.917
[2025-11-25 03:52:20] 2025-11-25 02:51:08,202 | INFO     | mean x: 1763995748.239146
[2025-11-25 03:52:20] 2025-11-25 02:51:08,202 | INFO     | mean y: 2876101.8633451955
[2025-11-25 03:52:20] 2025-11-25 02:51:08,202 | INFO     | intersect: -4814389771.79608
[2025-11-25 03:52:20] 2025-11-25 02:51:08,204 | INFO     | chi2: 10.63854107605954
[2025-11-25 03:52:20] 2025-11-25 02:51:08,204 | INFO     | current memory leak: 2.73 B/s (using 1405 data points, chi2=10.64)
[2025-11-25 03:52:20] 2025-11-25 02:51:08,206 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-11-25 03:52:20] 2025-11-25 02:51:08,207 | INFO     | ..............................
[2025-11-25 03:52:20] 2025-11-25 02:51:08,207 | INFO     | . Timing measurements:
[2025-11-25 03:52:20] 2025-11-25 02:51:08,207 | INFO     | . get job = 0 s
[2025-11-25 03:52:20] 2025-11-25 02:51:08,207 | INFO     | . initial setup = 7 s
[2025-11-25 03:52:20] 2025-11-25 02:51:08,207 | INFO     | . payload setup = 168 s
[2025-11-25 03:52:20] 2025-11-25 02:51:08,207 | INFO     | . stage-in = 0 s
[2025-11-25 03:52:20] 2025-11-25 02:51:08,207 | INFO     | . payload execution = 86800 s
[2025-11-25 03:52:20] 2025-11-25 02:51:08,207 | INFO     | . stage-out = 6 s
[2025-11-25 03:52:20] 2025-11-25 02:51:08,208 | INFO     | . log creation = 2 s
[2025-11-25 03:52:20] 2025-11-25 02:51:08,208 | INFO     | ..............................
[2025-11-25 03:52:20] 2025-11-25 02:51:08,336 | INFO     | 
[2025-11-25 03:52:20] 2025-11-25 02:51:08,336 | INFO     | job summary report
[2025-11-25 03:52:20] 2025-11-25 02:51:08,336 | INFO     | --------------------------------------------------
[2025-11-25 03:52:20] 2025-11-25 02:51:08,337 | INFO     | PanDA job id: 6893872253
[2025-11-25 03:52:20] 2025-11-25 02:51:08,337 | INFO     | task id: 47523449
[2025-11-25 03:52:20] 2025-11-25 02:51:08,337 | INFO     | errors: (none)
[2025-11-25 03:52:20] 2025-11-25 02:51:08,337 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 03:52:20] 2025-11-25 02:51:08,337 | INFO     | pilot state: finished 
[2025-11-25 03:52:20] 2025-11-25 02:51:08,337 | INFO     | transexitcode: 0
[2025-11-25 03:52:20] 2025-11-25 02:51:08,337 | INFO     | exeerrorcode: 0
[2025-11-25 03:52:20] 2025-11-25 02:51:08,337 | INFO     | exeerrordiag: 
[2025-11-25 03:52:20] 2025-11-25 02:51:08,338 | INFO     | exitcode: 0
[2025-11-25 03:52:20] 2025-11-25 02:51:08,338 | INFO     | exitmsg: OK
[2025-11-25 03:52:20] 2025-11-25 02:51:08,338 | INFO     | cpuconsumptiontime: 337656 s
[2025-11-25 03:52:20] 2025-11-25 02:51:08,338 | INFO     | nevents: 1000
[2025-11-25 03:52:20] 2025-11-25 02:51:08,338 | INFO     | neventsw: 0
[2025-11-25 03:52:20] 2025-11-25 02:51:08,338 | INFO     | pid: 23611
[2025-11-25 03:52:20] 2025-11-25 02:51:08,338 | INFO     | pgrp: 23611
[2025-11-25 03:52:20] 2025-11-25 02:51:08,338 | INFO     | corecount: 8
[2025-11-25 03:52:20] 2025-11-25 02:51:08,338 | INFO     | event service: False
[2025-11-25 03:52:20] 2025-11-25 02:51:08,339 | INFO     | sizes: {0: 2297972, 1: 2298574, 2: 2298857, 13: 2298857, 24: 2298913, 34: 2298941, 45: 2299097, 56: 2299125, 67: 2299153, 77: 2299181, 88: 2299237, 98: 2299807, 99
[2025-11-25 03:52:20] 2025-11-25 02:51:08,339 | INFO     | --------------------------------------------------
[2025-11-25 03:52:20] 2025-11-25 02:51:08,339 | INFO     | 
[2025-11-25 03:52:20] 2025-11-25 02:51:08,339 | INFO     | executing command: ls -lF /var/lib/boinc/slots/17
[2025-11-25 03:52:20] 2025-11-25 02:51:08,618 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 03:52:20] 2025-11-25 02:51:08,618 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 03:52:20] 2025-11-25 02:51:08,618 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 03:52:20] 2025-11-25 02:51:08,618 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 03:52:20] 2025-11-25 02:51:08,618 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 03:52:20] 2025-11-25 02:51:08,618 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 03:52:20] 2025-11-25 02:51:08,619 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 03:52:20] 2025-11-25 02:51:08,619 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 03:52:20] 2025-11-25 02:51:08,619 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 03:52:20] 2025-11-25 02:51:08,619 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 03:52:20] 2025-11-25 02:51:08,619 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 03:52:20] 2025-11-25 02:51:08,619 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 03:52:20] 2025-11-25 02:51:08,619 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 03:52:20] 2025-11-25 02:51:08,619 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 03:52:20] 2025-11-25 02:51:08,619 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 03:52:20] 2025-11-25 02:51:08,620 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 03:52:20] 2025-11-25 02:51:08,620 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 03:52:20] 2025-11-25 02:51:08,620 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 03:52:20] 2025-11-25 02:51:08,620 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 03:52:20] 2025-11-25 02:51:08,620 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 03:52:20] 2025-11-25 02:51:08,620 | INFO     | job 6893872253 has completed (purged errors)
[2025-11-25 03:52:20] 2025-11-25 02:51:08,620 | INFO     | overall cleanup function is called
[2025-11-25 03:52:20] 2025-11-25 02:51:09,647 | INFO     | --- collectZombieJob: --- 10, [23611]
[2025-11-25 03:52:20] 2025-11-25 02:51:09,647 | INFO     | zombie collector waiting for pid 23611
[2025-11-25 03:52:20] 2025-11-25 02:51:09,647 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 03:52:20] 2025-11-25 02:51:09,648 | INFO     | collected zombie processes
[2025-11-25 03:52:20] 2025-11-25 02:51:09,648 | INFO     | will attempt to kill all subprocesses of pid=23611
[2025-11-25 03:52:20] 2025-11-25 02:51:09,807 | INFO     | process IDs to be killed: [23611] (in reverse order)
[2025-11-25 03:52:20] 2025-11-25 02:51:10,380 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 03:52:20] 2025-11-25 02:51:10,381 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 03:52:20] 2025-11-25 02:51:10,388 | INFO     | did not find any defunct processes belonging to 23611
[2025-11-25 03:52:20] 2025-11-25 02:51:10,392 | INFO     | did not find any defunct processes belonging to 23611
[2025-11-25 03:52:20] 2025-11-25 02:51:10,426 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 03:52:20] 2025-11-25 02:51:10,427 | INFO     | ready for new job
[2025-11-25 03:52:20] 2025-11-25 02:51:10,427 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 03:52:20] 2025-11-25 02:51:10,433 | INFO     | ***************************************
[2025-11-25 03:52:20] 2025-11-25 02:51:10,433 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 03:52:20] 2025-11-25 02:51:10,433 | INFO     | ***************************************
[2025-11-25 03:52:20] 2025-11-25 02:51:10,434 | INFO     | 
[2025-11-25 03:52:20] 2025-11-25 02:51:10,434 | INFO     | pilot is running in a VM
[2025-11-25 03:52:20] 2025-11-25 02:51:10,434 | INFO     | architecture information:
[2025-11-25 03:52:20] 2025-11-25 02:51:10,440 | INFO     | executing command: cat /etc/os-release
[2025-11-25 03:52:20] 2025-11-25 02:51:10,676 | INFO     | cat /etc/os-release:
[2025-11-25 03:52:20] NAME="CentOS Linux"
[2025-11-25 03:52:20] VERSION="7 (Core)"
[2025-11-25 03:52:20] ID="centos"
[2025-11-25 03:52:20] ID_LIKE="rhel fedora"
[2025-11-25 03:52:20] VERSION_ID="7"
[2025-11-25 03:52:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 03:52:20] ANSI_COLOR="0;31"
[2025-11-25 03:52:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 03:52:20] HOME_URL="https://www.centos.org/"
[2025-11-25 03:52:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 03:52:20] 
[2025-11-25 03:52:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 03:52:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 03:52:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 03:52:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 03:52:20] 
[2025-11-25 03:52:20] 2025-11-25 02:51:10,677 | INFO     | ***************************************
[2025-11-25 03:52:20] 2025-11-25 02:51:11,180 | INFO     | executing command: df -mP /var/lib/boinc/slots/17
[2025-11-25 03:52:20] 2025-11-25 02:51:11,366 | INFO     | sufficient remaining disk space (494984495104 B)
[2025-11-25 03:52:20] 2025-11-25 02:51:11,366 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 03:52:20] 2025-11-25 02:51:11,367 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 03:52:20] 2025-11-25 02:51:11,367 | INFO     | update_server=False
[2025-11-25 03:52:20] 2025-11-25 02:51:11,367 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 03:52:20] 2025-11-25 02:51:11,367 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 03:52:20] 2025-11-25 02:51:11,479 | INFO     | all job control threads have been joined
[2025-11-25 03:52:20] 2025-11-25 02:51:11,697 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 03:52:20] 2025-11-25 02:51:11,697 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 03:52:20] 2025-11-25 02:51:11,697 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 03:52:20] 2025-11-25 02:51:11,698 | INFO     | will abort loop
[2025-11-25 03:52:20] 2025-11-25 02:51:11,736 | INFO     | all payload control threads have been joined
[2025-11-25 03:52:20] 2025-11-25 02:51:11,762 | INFO     | all data control threads have been joined
[2025-11-25 03:52:20] 2025-11-25 02:51:12,373 | INFO     | [job] retrieve thread has finished
[2025-11-25 03:52:20] 2025-11-25 02:51:12,470 | INFO     | [payload] failed_post thread has finished
[2025-11-25 03:52:20] 2025-11-25 02:51:12,485 | INFO     | [job] control thread has finished
[2025-11-25 03:52:20] 2025-11-25 02:51:12,556 | INFO     | [job] validate thread has finished
[2025-11-25 03:52:20] 2025-11-25 02:51:12,703 | INFO     | [job] job monitor thread has finished
[2025-11-25 03:52:20] 2025-11-25 02:51:12,742 | INFO     | [payload] control thread has finished
[2025-11-25 03:52:20] 2025-11-25 02:51:12,768 | INFO     | [data] control thread has finished
[2025-11-25 03:52:20] 2025-11-25 02:51:12,932 | INFO     | [payload] validate_post thread has finished
[2025-11-25 03:52:20] 2025-11-25 02:51:13,118 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 03:52:20] 2025-11-25 02:51:13,209 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 03:52:20] 2025-11-25 02:51:13,269 | INFO     | [data] copytool_in thread has finished
[2025-11-25 03:52:20] 2025-11-25 02:51:13,350 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 03:52:20] 2025-11-25 02:51:13,374 | INFO     | [data] copytool_out thread has finished
[2025-11-25 03:52:20] 2025-11-25 02:51:13,507 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 03:52:20] 2025-11-25 02:51:13,551 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 03:52:20] 2025-11-25 02:51:14,045 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 03:52:20] 2025-11-25 02:51:14,356 | INFO     | [job] queue monitor thread has finished
[2025-11-25 03:52:20] 2025-11-25 02:51:18,054 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 03:52:20] 2025-11-25 02:51:40,027 | INFO     | PID=16974 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 03:52:20] 2025-11-25 02:51:40,027 | INFO     | .. there are 9 such processes running
[2025-11-25 03:52:20] 2025-11-25 02:51:40,027 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 03:52:20] 2025-11-25 02:51:40,028 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 03:52:20] 2025-11-25 02:51:40,028 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 03:52:20] 2025-11-25 02:52:09,349 | INFO     | [monitor] cgroup control has ended
[2025-11-25 03:52:20] 2025-11-25 02:52:10,286 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140505446201152)>', '<ExcThread(monitor, started 140504989677312)>']
[2025-11-25 03:52:20] 2025-11-25 02:52:11,211 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 03:52:20] 2025-11-25 02:52:11,211 | INFO     | [monitor] control thread has ended
[2025-11-25 03:52:20] 2025-11-25 02:52:15,312 | INFO     | all workflow threads have been joined
[2025-11-25 03:52:20] 2025-11-25 02:52:15,312 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 03:52:20] 2025-11-25 02:52:15,313 | INFO     | traces error code: 0
[2025-11-25 03:52:20] 2025-11-25 02:52:15,313 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 03:52:20] 2025-11-25 02:52:15,720 [wrapper] ==== pilot stdout END ====
[2025-11-25 03:52:20] 2025-11-25 02:52:15,773 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 03:52:20] 2025-11-25 02:52:15,879 [wrapper] pilotpid: 16974
[2025-11-25 03:52:20] 2025-11-25 02:52:15,980 [wrapper] Pilot exit status: 0
[2025-11-25 03:52:20] 2025-11-25 02:52:16,351 [wrapper] pandaids: 6893872253
[2025-11-25 03:52:20] 2025-11-25 02:52:17,510 [wrapper] cleanup supervisor_pilot 28627 16975
[2025-11-25 03:52:20] 2025-11-25 02:52:17,622 [wrapper] Test setup, not cleaning
[2025-11-25 03:52:20] 2025-11-25 02:52:17,725 [wrapper] apfmon messages muted
[2025-11-25 03:52:20] 2025-11-25 02:52:17,832 [wrapper] ==== wrapper stdout END ====
[2025-11-25 03:52:20] 2025-11-25 02:52:17,885 [wrapper] ==== wrapper stderr END ====
[2025-11-25 03:52:20]  *** Error codes and diagnostics ***
[2025-11-25 03:52:20]     "exeErrorCode": 0,
[2025-11-25 03:52:20]     "exeErrorDiag": "",
[2025-11-25 03:52:20]     "pilotErrorCode": 0,
[2025-11-25 03:52:20]     "pilotErrorDiag": "",
[2025-11-25 03:52:20]  *** Listing of results directory ***
[2025-11-25 03:52:20] total 1344104
[2025-11-25 03:52:20] -rw-r--r--. 1 boinc boinc    576529 Nov 20 16:07 pilot3.tar.gz
[2025-11-25 03:52:20] -rwx------. 1 boinc boinc     36292 Nov 20 16:09 runpilot2-wrapper.sh
[2025-11-25 03:52:20] -rw-r--r--. 1 boinc boinc      5112 Nov 20 16:09 queuedata.json
[2025-11-25 03:52:20] -rw-r--r--. 1 boinc boinc       100 Nov 24 03:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 03:52:20] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 03:32 run_atlas
[2025-11-25 03:52:20] -rw-r--r--. 1 boinc boinc       105 Nov 24 03:32 job.xml
[2025-11-25 03:52:20] -rw-r--r--. 1 boinc boinc      6392 Nov 24 03:32 init_data.xml
[2025-11-25 03:52:20] -rw-r--r--. 2 boinc boinc 410438274 Nov 24 03:32 EVNT.47493127._000675.pool.root.1
[2025-11-25 03:52:20] -rw-r--r--. 2 boinc boinc     15847 Nov 24 03:32 start_atlas.sh
[2025-11-25 03:52:20] drwxrwx--x. 2 boinc boinc        68 Nov 24 03:32 shared
[2025-11-25 03:52:20] -rw-r--r--. 2 boinc boinc    590096 Nov 24 03:32 input.tar.gz
[2025-11-25 03:52:20] -rw-r--r--. 1 boinc boinc         0 Nov 24 03:32 boinc_lockfile
[2025-11-25 03:52:20] -rw-r--r--. 1 boinc boinc      2782 Nov 24 03:32 pandaJob.out
[2025-11-25 03:52:20] -rw-------. 1 boinc boinc    989786 Nov 24 03:36 agis_schedconf.cvmfs.json
[2025-11-25 03:52:20] drwx------. 5 boinc boinc      4096 Nov 24 03:36 pilot3
[2025-11-25 03:52:20] -rw-r--r--. 1 boinc boinc       533 Nov 25 03:24 boinc_task_state.xml
[2025-11-25 03:52:20] -rw-------. 1 boinc boinc 933823833 Nov 25 03:48 HITS.47523449._006741.pool.root.1
[2025-11-25 03:52:20] -rw-------. 1 boinc boinc      1030 Nov 25 03:49 memory_monitor_summary.json
[2025-11-25 03:52:20] -rw-------. 1 boinc boinc   1516227 Nov 25 03:49 agis_ddmendpoints.agis.ALL.json
[2025-11-25 03:52:20] -rw-------. 1 boinc boinc   2500389 Nov 25 03:49 log.47523449._006741.job.log.tgz.1
[2025-11-25 03:52:20] -rw-------. 1 boinc boinc        95 Nov 25 03:50 pilot_heartbeat.json
[2025-11-25 03:52:20] -rw-------. 1 boinc boinc      8626 Nov 25 03:51 heartbeat.json
[2025-11-25 03:52:20] -rw-r--r--. 1 boinc boinc      8192 Nov 25 03:51 boinc_mmap_file
[2025-11-25 03:52:20] -rw-r--r--. 1 boinc boinc        29 Nov 25 03:51 wrapper_checkpoint.txt
[2025-11-25 03:52:20] -rw-------. 1 boinc boinc      5071 Nov 25 03:52 pilotlog.txt
[2025-11-25 03:52:20] -rw-------. 1 boinc boinc  11599764 Nov 25 03:52 log.47523449._006741.job.log.1
[2025-11-25 03:52:20] -rw-------. 1 boinc boinc       353 Nov 25 03:52 output.list
[2025-11-25 03:52:20] -rw-r--r--. 1 boinc boinc       620 Nov 25 03:52 runtime_log
[2025-11-25 03:52:20] -rw-------. 1 boinc boinc  14120960 Nov 25 03:52 result.tar.gz
[2025-11-25 03:52:20] -rw-r--r--. 1 boinc boinc      8833 Nov 25 03:52 runtime_log.err
[2025-11-25 03:52:20] -rw-------. 1 boinc boinc       662 Nov 25 03:52 eXtKDm8SLg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmkBIKDmMm0fCo.diag
[2025-11-25 03:52:20] -rw-r--r--. 1 boinc boinc     21513 Nov 25 03:52 stderr.txt
[2025-11-25 03:52:20] HITS file was successfully produced:
[2025-11-25 03:52:20] -rw-------. 1 boinc boinc 933823833 Nov 25 03:48 shared/HITS.pool.root.1
[2025-11-25 03:52:20]  *** Contents of shared directory: ***
[2025-11-25 03:52:20] total 1327148
[2025-11-25 03:52:20] -rw-r--r--. 2 boinc boinc 410438274 Nov 24 03:32 ATLAS.root_0
[2025-11-25 03:52:20] -rw-r--r--. 2 boinc boinc     15847 Nov 24 03:32 start_atlas.sh
[2025-11-25 03:52:20] -rw-r--r--. 2 boinc boinc    590096 Nov 24 03:32 input.tar.gz
[2025-11-25 03:52:20] -rw-------. 1 boinc boinc 933823833 Nov 25 03:48 HITS.pool.root.1
[2025-11-25 03:52:20] -rw-------. 1 boinc boinc  14120960 Nov 25 03:52 result.tar.gz
03:52:21 (13155): run_atlas exited; CPU time 338188.942110
03:52:21 (13155): called boinc_finish(0)

</stderr_txt>
]]>

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