Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:16:03 (4165498): wrapper (7.7.26015): starting
07:16:03 (4165498): wrapper: running run_atlas (--nthreads 10)
[2025-11-21 07:16:03] Arguments: --nthreads 10
[2025-11-21 07:16:03] Threads: 10
[2025-11-21 07:16:03] Checking for CVMFS
[2025-11-21 07:16:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 07:16:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 07:16:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 07:16:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 07:16:03] 2.13.2.0 4359 26519 271308 153124 3 361 38804745 40960001 5414 16776704 0 30979283 99.541 35245825 27317 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 07:16:03] CVMFS is ok
[2025-11-21 07:16:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 07:16:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 07:16:03] Further information can be found at the LHC@home message board.
[2025-11-21 07:16:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 07:16:03] Checking for apptainer binary...
[2025-11-21 07:16:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 07:16:03] Running /usr/bin/apptainer --version
[2025-11-21 07:16:03] apptainer version 1.4.4-1.el9
[2025-11-21 07:16:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 07:16:03] c-211-14.aglt2.org
[2025-11-21 07:16:03] apptainer works
[2025-11-21 07:16:03] Set ATHENA_PROC_NUMBER=10
[2025-11-21 07:16:03] Set ATHENA_CORE_NUMBER=10
[2025-11-21 07:16:03] Starting ATLAS job with PandaID=6893850239
[2025-11-21 07:16:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 07:10:03]  *** The last 200 lines of the pilot log: ***
[2025-11-22 07:10:03] 2025-11-22 12:09:09,673 | INFO     | time since job start (85977s) is within the limit (172800.0s)
[2025-11-22 07:10:03] 2025-11-22 12:09:10,919 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 07:10:03] 2025-11-22 12:09:10,928 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2600.3053541666673
[2025-11-22 07:10:03] 2025-11-22 12:09:10,938 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893850239/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 07:10:03] 2025-11-22 12:09:10,939 | INFO     | extracted standard info from prmon json
[2025-11-22 07:10:03] 2025-11-22 12:09:10,939 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 07:10:03] 2025-11-22 12:09:10,940 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 07:10:03] 2025-11-22 12:09:10,968 | INFO     | fitting pss+swap vs Time
[2025-11-22 07:10:03] 2025-11-22 12:09:10,971 | INFO     | sum of square deviations: 867774626900.0154
[2025-11-22 07:10:03] 2025-11-22 12:09:11,030 | INFO     | sum of deviations: 4080106572084.6426
[2025-11-22 07:10:03] 2025-11-22 12:09:11,030 | INFO     | mean x: 1763770352.8750887
[2025-11-22 07:10:03] 2025-11-22 12:09:11,030 | INFO     | mean y: 3306383.8843151173
[2025-11-22 07:10:03] 2025-11-22 12:09:11,031 | INFO     | intersect: -8289596848.515519
[2025-11-22 07:10:03] 2025-11-22 12:09:11,033 | INFO     | chi2: 10.147638350334132
[2025-11-22 07:10:03] 2025-11-22 12:09:11,035 | INFO     | sum of square deviations: 858579281278.996
[2025-11-22 07:10:03] 2025-11-22 12:09:11,094 | INFO     | sum of deviations: 4645585518270.266
[2025-11-22 07:10:03] 2025-11-22 12:09:11,095 | INFO     | mean x: 1763770200.4245014
[2025-11-22 07:10:03] 2025-11-22 12:09:11,095 | INFO     | mean y: 3315759.672364672
[2025-11-22 07:10:03] 2025-11-22 12:09:11,095 | INFO     | intersect: -9540060698.751797
[2025-11-22 07:10:03] 2025-11-22 12:09:11,097 | INFO     | chi2: 6.726930868093228
[2025-11-22 07:10:03] 2025-11-22 12:09:11,097 | INFO     | current chi2=6.726930868093228 (change=33.709394877363465 %)
[2025-11-22 07:10:03] 2025-11-22 12:09:11,099 | INFO     | sum of square deviations: 849448982713.9132
[2025-11-22 07:10:03] 2025-11-22 12:09:11,154 | INFO     | sum of deviations: 5242922548323.518
[2025-11-22 07:10:03] 2025-11-22 12:09:11,154 | INFO     | mean x: 1763770047.972123
[2025-11-22 07:10:03] 2025-11-22 12:09:11,154 | INFO     | mean y: 3325731.962115797
[2025-11-22 07:10:03] 2025-11-22 12:09:11,154 | INFO     | intersect: -10882919284.220459
[2025-11-22 07:10:03] 2025-11-22 12:09:11,156 | INFO     | chi2: 2.953637693084522
[2025-11-22 07:10:03] 2025-11-22 12:09:11,156 | INFO     | current chi2=2.953637693084522 (change=56.09234358131972 %)
[2025-11-22 07:10:03] 2025-11-22 12:09:11,158 | INFO     | sum of square deviations: 840380769250.4653
[2025-11-22 07:10:03] 2025-11-22 12:09:11,220 | INFO     | sum of deviations: 5419921397273.498
[2025-11-22 07:10:03] 2025-11-22 12:09:11,221 | INFO     | mean x: 1763769895.4949784
[2025-11-22 07:10:03] 2025-11-22 12:09:11,221 | INFO     | mean y: 3328706.070301291
[2025-11-22 07:10:03] 2025-11-22 12:09:11,221 | INFO     | intersect: -11371865189.651726
[2025-11-22 07:10:03] 2025-11-22 12:09:11,223 | INFO     | chi2: 2.445414444681275
[2025-11-22 07:10:03] 2025-11-22 12:09:11,223 | INFO     | current chi2=2.445414444681275 (change=17.20668887701331 %)
[2025-11-22 07:10:03] 2025-11-22 12:09:11,223 | INFO     | right removable region: 1393
[2025-11-22 07:10:03] 2025-11-22 12:09:11,228 | INFO     | sum of square deviations: 858567355778.9948
[2025-11-22 07:10:03] 2025-11-22 12:09:11,283 | INFO     | sum of deviations: 3694778473628.586
[2025-11-22 07:10:03] 2025-11-22 12:09:11,283 | INFO     | mean x: 1763770505.4245014
[2025-11-22 07:10:03] 2025-11-22 12:09:11,283 | INFO     | mean y: 3312761.4017094015
[2025-11-22 07:10:03] 2025-11-22 12:09:11,283 | INFO     | intersect: -7586937732.050484
[2025-11-22 07:10:03] 2025-11-22 12:09:11,286 | INFO     | chi2: 8.383955184787027
[2025-11-22 07:10:03] 2025-11-22 12:09:11,286 | INFO     | current chi2=8.383955184787027 (change=17.380232766070467 %)
[2025-11-22 07:10:03] 2025-11-22 12:09:11,286 | INFO     | left removable region: 10
[2025-11-22 07:10:03] 2025-11-22 12:09:11,289 | INFO     | sum of square deviations: 820639883293.7668
[2025-11-22 07:10:03] 2025-11-22 12:09:11,344 | INFO     | sum of deviations: 4934183624831.939
[2025-11-22 07:10:03] 2025-11-22 12:09:11,345 | INFO     | mean x: 1763770170.0817065
[2025-11-22 07:10:03] 2025-11-22 12:09:11,345 | INFO     | mean y: 3337811.0448300797
[2025-11-22 07:10:03] 2025-11-22 12:09:11,345 | INFO     | intersect: -10601515874.90361
[2025-11-22 07:10:03] 2025-11-22 12:09:11,347 | INFO     | chi2: 0.536884220067756
[2025-11-22 07:10:03] 2025-11-22 12:09:11,347 | INFO     | current memory leak: 6.01 B/s (using 1383 data points, chi2=0.54)
[2025-11-22 07:10:03] 2025-11-22 12:09:11,348 | INFO     | could have reported an average CPU frequency of 2702 MHz (50 samples)
[2025-11-22 07:10:03] 2025-11-22 12:09:11,348 | INFO     | ..............................
[2025-11-22 07:10:03] 2025-11-22 12:09:11,349 | INFO     | . Timing measurements:
[2025-11-22 07:10:03] 2025-11-22 12:09:11,349 | INFO     | . get job = 0 s
[2025-11-22 07:10:03] 2025-11-22 12:09:11,349 | INFO     | . initial setup = 2 s
[2025-11-22 07:10:03] 2025-11-22 12:09:11,349 | INFO     | . payload setup = 4 s
[2025-11-22 07:10:03] 2025-11-22 12:09:11,349 | INFO     | . stage-in = 0 s
[2025-11-22 07:10:03] 2025-11-22 12:09:11,349 | INFO     | . payload execution = 85935 s
[2025-11-22 07:10:03] 2025-11-22 12:09:11,349 | INFO     | . stage-out = 4 s
[2025-11-22 07:10:03] 2025-11-22 12:09:11,349 | INFO     | . log creation = 1 s
[2025-11-22 07:10:03] 2025-11-22 12:09:11,349 | INFO     | ..............................
[2025-11-22 07:10:03] 2025-11-22 12:09:11,478 | INFO     | 
[2025-11-22 07:10:03] 2025-11-22 12:09:11,479 | INFO     | job summary report
[2025-11-22 07:10:03] 2025-11-22 12:09:11,479 | INFO     | --------------------------------------------------
[2025-11-22 07:10:03] 2025-11-22 12:09:11,479 | INFO     | PanDA job id: 6893850239
[2025-11-22 07:10:03] 2025-11-22 12:09:11,479 | INFO     | task id: 47523449
[2025-11-22 07:10:03] 2025-11-22 12:09:11,479 | INFO     | errors: (none)
[2025-11-22 07:10:03] 2025-11-22 12:09:11,479 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 07:10:03] 2025-11-22 12:09:11,479 | INFO     | pilot state: finished 
[2025-11-22 07:10:03] 2025-11-22 12:09:11,479 | INFO     | transexitcode: 0
[2025-11-22 07:10:03] 2025-11-22 12:09:11,480 | INFO     | exeerrorcode: 0
[2025-11-22 07:10:03] 2025-11-22 12:09:11,480 | INFO     | exeerrordiag: 
[2025-11-22 07:10:03] 2025-11-22 12:09:11,480 | INFO     | exitcode: 0
[2025-11-22 07:10:03] 2025-11-22 12:09:11,480 | INFO     | exitmsg: OK
[2025-11-22 07:10:03] 2025-11-22 12:09:11,480 | INFO     | cpuconsumptiontime: 327898 s
[2025-11-22 07:10:03] 2025-11-22 12:09:11,480 | INFO     | nevents: 1000
[2025-11-22 07:10:03] 2025-11-22 12:09:11,480 | INFO     | neventsw: 0
[2025-11-22 07:10:03] 2025-11-22 12:09:11,480 | INFO     | pid: 4175665
[2025-11-22 07:10:03] 2025-11-22 12:09:11,480 | INFO     | pgrp: 4175665
[2025-11-22 07:10:03] 2025-11-22 12:09:11,481 | INFO     | corecount: 10
[2025-11-22 07:10:03] 2025-11-22 12:09:11,481 | INFO     | event service: False
[2025-11-22 07:10:03] 2025-11-22 12:09:11,481 | INFO     | sizes: {0: 2298630, 1: 2298829, 4: 2299091, 12: 2299119, 85943: 2363084, 85949: 2372078, 85952: 2372262, 85964: 2372508}
[2025-11-22 07:10:03] 2025-11-22 12:09:11,481 | INFO     | --------------------------------------------------
[2025-11-22 07:10:03] 2025-11-22 12:09:11,481 | INFO     | 
[2025-11-22 07:10:03] 2025-11-22 12:09:11,481 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 07:10:03] 2025-11-22 12:09:11,512 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 07:10:03] 2025-11-22 12:09:11,513 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 07:10:03] 2025-11-22 12:09:11,513 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 07:10:03] 2025-11-22 12:09:11,513 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 07:10:03] 2025-11-22 12:09:11,513 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 07:10:03] 2025-11-22 12:09:11,513 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 07:10:03] 2025-11-22 12:09:11,514 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 07:10:03] 2025-11-22 12:09:11,514 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 07:10:03] 2025-11-22 12:09:11,514 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 07:10:03] 2025-11-22 12:09:11,514 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 07:10:03] 2025-11-22 12:09:11,514 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 07:10:03] 2025-11-22 12:09:11,514 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 07:10:03] 2025-11-22 12:09:11,514 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 07:10:03] 2025-11-22 12:09:11,515 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 07:10:03] 2025-11-22 12:09:11,515 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 07:10:03] 2025-11-22 12:09:11,515 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 07:10:03] 2025-11-22 12:09:11,515 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 07:10:03] 2025-11-22 12:09:11,515 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 07:10:03] 2025-11-22 12:09:11,515 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 07:10:03] 2025-11-22 12:09:11,517 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 07:10:03] 2025-11-22 12:09:11,517 | INFO     | job 6893850239 has completed (purged errors)
[2025-11-22 07:10:03] 2025-11-22 12:09:11,517 | INFO     | overall cleanup function is called
[2025-11-22 07:10:03] 2025-11-22 12:09:12,540 | INFO     | --- collectZombieJob: --- 10, [4175665]
[2025-11-22 07:10:03] 2025-11-22 12:09:12,540 | INFO     | zombie collector waiting for pid 4175665
[2025-11-22 07:10:03] 2025-11-22 12:09:12,540 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 07:10:03] 2025-11-22 12:09:12,540 | INFO     | collected zombie processes
[2025-11-22 07:10:03] 2025-11-22 12:09:12,540 | INFO     | will attempt to kill all subprocesses of pid=4175665
[2025-11-22 07:10:03] 2025-11-22 12:09:12,981 | INFO     | process IDs to be killed: [4175665] (in reverse order)
[2025-11-22 07:10:03] 2025-11-22 12:09:13,093 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 07:10:03] 2025-11-22 12:09:13,093 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 07:10:03] 2025-11-22 12:09:13,108 | INFO     | did not find any defunct processes belonging to 4175665
[2025-11-22 07:10:03] 2025-11-22 12:09:13,121 | INFO     | did not find any defunct processes belonging to 4175665
[2025-11-22 07:10:03] 2025-11-22 12:09:13,122 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 07:10:03] 2025-11-22 12:09:13,122 | INFO     | ready for new job
[2025-11-22 07:10:03] 2025-11-22 12:09:13,123 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 07:10:03] 2025-11-22 12:09:13,130 | INFO     | ***************************************
[2025-11-22 07:10:03] 2025-11-22 12:09:13,130 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 07:10:03] 2025-11-22 12:09:13,130 | INFO     | ***************************************
[2025-11-22 07:10:03] 2025-11-22 12:09:13,130 | INFO     | 
[2025-11-22 07:10:03] 2025-11-22 12:09:13,134 | INFO     | architecture information:
[2025-11-22 07:10:03] 2025-11-22 12:09:13,135 | INFO     | executing command: cat /etc/os-release
[2025-11-22 07:10:03] 2025-11-22 12:09:13,196 | INFO     | cat /etc/os-release:
[2025-11-22 07:10:03] NAME="CentOS Linux"
[2025-11-22 07:10:03] VERSION="7 (Core)"
[2025-11-22 07:10:03] ID="centos"
[2025-11-22 07:10:03] ID_LIKE="rhel fedora"
[2025-11-22 07:10:03] VERSION_ID="7"
[2025-11-22 07:10:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 07:10:03] ANSI_COLOR="0;31"
[2025-11-22 07:10:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 07:10:03] HOME_URL="https://www.centos.org/"
[2025-11-22 07:10:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 07:10:03] 
[2025-11-22 07:10:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 07:10:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 07:10:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 07:10:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 07:10:03] 
[2025-11-22 07:10:03] 2025-11-22 12:09:13,196 | INFO     | ***************************************
[2025-11-22 07:10:03] 2025-11-22 12:09:13,699 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 07:10:03] 2025-11-22 12:09:13,751 | INFO     | sufficient remaining disk space (57654902784 B)
[2025-11-22 07:10:03] 2025-11-22 12:09:13,752 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 07:10:03] 2025-11-22 12:09:13,752 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 07:10:03] 2025-11-22 12:09:13,752 | INFO     | update_server=False
[2025-11-22 07:10:03] 2025-11-22 12:09:13,752 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 07:10:03] 2025-11-22 12:09:13,885 | INFO     | all job control threads have been joined
[2025-11-22 07:10:03] 2025-11-22 12:09:14,057 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 07:10:03] 2025-11-22 12:09:14,063 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 07:10:03] 2025-11-22 12:09:14,130 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 07:10:03] 2025-11-22 12:09:14,131 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 07:10:03] 2025-11-22 12:09:14,131 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 07:10:03] 2025-11-22 12:09:14,131 | INFO     | will abort loop
[2025-11-22 07:10:03] 2025-11-22 12:09:14,325 | INFO     | all payload control threads have been joined
[2025-11-22 07:10:03] 2025-11-22 12:09:14,649 | INFO     | all data control threads have been joined
[2025-11-22 07:10:03] 2025-11-22 12:09:14,759 | INFO     | [job] retrieve thread has finished
[2025-11-22 07:10:03] 2025-11-22 12:09:14,892 | INFO     | [job] control thread has finished
[2025-11-22 07:10:03] 2025-11-22 12:09:15,136 | INFO     | [job] job monitor thread has finished
[2025-11-22 07:10:03] 2025-11-22 12:09:15,222 | INFO     | [data] copytool_in thread has finished
[2025-11-22 07:10:03] 2025-11-22 12:09:15,331 | INFO     | [payload] control thread has finished
[2025-11-22 07:10:03] 2025-11-22 12:09:15,539 | INFO     | [payload] failed_post thread has finished
[2025-11-22 07:10:03] 2025-11-22 12:09:15,655 | INFO     | [data] control thread has finished
[2025-11-22 07:10:03] 2025-11-22 12:09:15,660 | INFO     | [job] validate thread has finished
[2025-11-22 07:10:03] 2025-11-22 12:09:15,719 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 07:10:03] 2025-11-22 12:09:15,856 | INFO     | [payload] validate_post thread has finished
[2025-11-22 07:10:03] 2025-11-22 12:09:15,891 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 07:10:03] 2025-11-22 12:09:15,894 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 07:10:03] 2025-11-22 12:09:15,911 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 07:10:03] 2025-11-22 12:09:16,070 | INFO     | [data] copytool_out thread has finished
[2025-11-22 07:10:03] 2025-11-22 12:09:16,493 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 07:10:03] 2025-11-22 12:09:17,500 | INFO     | [job] queue monitor thread has finished
[2025-11-22 07:10:03] 2025-11-22 12:09:18,065 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 07:10:03] 2025-11-22 12:09:43,237 | INFO     | PID=4169240 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 07:10:03] 2025-11-22 12:09:43,238 | INFO     | .. there are 15 such processes running
[2025-11-22 07:10:03] 2025-11-22 12:09:43,239 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 07:10:03] 2025-11-22 12:09:43,239 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 07:10:03] 2025-11-22 12:09:43,239 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 07:10:03] 2025-11-22 12:09:55,635 | INFO     | [monitor] cgroup control has ended
[2025-11-22 07:10:03] 2025-11-22 12:09:57,309 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139694187263808)>', '<ExcThread(monitor, started 139693828052736)>']
[2025-11-22 07:10:03] 2025-11-22 12:09:57,323 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 07:10:03] 2025-11-22 12:09:57,324 | INFO     | [monitor] control thread has ended
[2025-11-22 07:10:03] 2025-11-22 12:10:02,334 | INFO     | all workflow threads have been joined
[2025-11-22 07:10:03] 2025-11-22 12:10:02,335 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 07:10:03] 2025-11-22 12:10:02,335 | INFO     | traces error code: 0
[2025-11-22 07:10:03] 2025-11-22 12:10:02,335 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 07:10:03] 2025-11-22 12:10:02,561 [wrapper] ==== pilot stdout END ====
[2025-11-22 07:10:03] 2025-11-22 12:10:02,589 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 07:10:03] 2025-11-22 12:10:02,611 [wrapper] pilotpid: 4169240
[2025-11-22 07:10:03] 2025-11-22 12:10:02,615 [wrapper] Pilot exit status: 0
[2025-11-22 07:10:03] 2025-11-22 12:10:02,663 [wrapper] pandaids: 6893850239
[2025-11-22 07:10:03] 2025-11-22 12:10:02,748 [wrapper] cleanup supervisor_pilot 2355628 4169241
[2025-11-22 07:10:03] 2025-11-22 12:10:02,781 [wrapper] Test setup, not cleaning
[2025-11-22 07:10:03] 2025-11-22 12:10:02,797 [wrapper] apfmon messages muted
[2025-11-22 07:10:03] 2025-11-22 12:10:02,812 [wrapper] ==== wrapper stdout END ====
[2025-11-22 07:10:03] 2025-11-22 12:10:02,830 [wrapper] ==== wrapper stderr END ====
[2025-11-22 07:10:03]  *** Error codes and diagnostics ***
[2025-11-22 07:10:03]     "exeErrorCode": 0,
[2025-11-22 07:10:03]     "exeErrorDiag": "",
[2025-11-22 07:10:03]     "pilotErrorCode": 0,
[2025-11-22 07:10:03]     "pilotErrorDiag": "",
[2025-11-22 07:10:03]  *** Listing of results directory ***
[2025-11-22 07:10:03] total 1330304
[2025-11-22 07:10:03] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 06:09 pilot3.tar.gz
[2025-11-22 07:10:03] -rwx------. 1 boincer umatlas     36292 Nov 20 06:13 runpilot2-wrapper.sh
[2025-11-22 07:10:03] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 06:13 queuedata.json
[2025-11-22 07:10:03] -rw-r--r--. 1 boincer umatlas       100 Nov 21 07:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 07:10:03] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 07:16 run_atlas
[2025-11-22 07:10:03] -rw-r--r--. 1 boincer umatlas       105 Nov 21 07:16 job.xml
[2025-11-22 07:10:03] -rw-r--r--. 2 boincer umatlas 408783623 Nov 21 07:16 EVNT.47493127._000323.pool.root.1
[2025-11-22 07:10:03] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 07:16 start_atlas.sh
[2025-11-22 07:10:03] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 07:16 shared
[2025-11-22 07:10:03] -rw-r--r--. 2 boincer umatlas    590096 Nov 21 07:16 input.tar.gz
[2025-11-22 07:10:03] -rw-r--r--. 1 boincer umatlas         0 Nov 21 07:16 boinc_lockfile
[2025-11-22 07:10:03] -rw-r--r--. 1 boincer umatlas      2783 Nov 21 07:16 pandaJob.out
[2025-11-22 07:10:03] -rw-------. 1 boincer umatlas        57 Nov 21 07:16 setup.sh.local
[2025-11-22 07:10:03] -rw-------. 1 boincer umatlas    989817 Nov 21 07:16 agis_schedconf.cvmfs.json
[2025-11-22 07:10:03] drwx------. 5 boincer umatlas      4096 Nov 21 07:16 pilot3
[2025-11-22 07:10:03] -rw-r--r--. 1 boincer umatlas       533 Nov 22 06:51 boinc_task_state.xml
[2025-11-22 07:10:03] -rw-r--r--. 1 boincer umatlas      6617 Nov 22 07:04 init_data.xml
[2025-11-22 07:10:03] -rw-------. 1 boincer umatlas 923199238 Nov 22 07:08 HITS.47523449._003221.pool.root.1
[2025-11-22 07:10:03] -rw-------. 1 boincer umatlas      1057 Nov 22 07:08 memory_monitor_summary.json
[2025-11-22 07:10:03] -rw-------. 1 boincer umatlas   1526164 Nov 22 07:08 agis_ddmendpoints.agis.ALL.json
[2025-11-22 07:10:03] -rw-------. 1 boincer umatlas   2612651 Nov 22 07:08 log.47523449._003221.job.log.tgz.1
[2025-11-22 07:10:03] -rw-------. 1 boincer umatlas      8626 Nov 22 07:09 heartbeat.json
[2025-11-22 07:10:03] -rw-------. 1 boincer umatlas        95 Nov 22 07:09 pilot_heartbeat.json
[2025-11-22 07:10:03] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 07:09 boinc_mmap_file
[2025-11-22 07:10:03] -rw-r--r--. 1 boincer umatlas        29 Nov 22 07:09 wrapper_checkpoint.txt
[2025-11-22 07:10:03] -rw-------. 1 boincer umatlas      5010 Nov 22 07:10 pilotlog.txt
[2025-11-22 07:10:03] -rw-------. 1 boincer umatlas  10549815 Nov 22 07:10 log.47523449._003221.job.log.1
[2025-11-22 07:10:03] -rw-------. 1 boincer umatlas       353 Nov 22 07:10 output.list
[2025-11-22 07:10:03] -rw-r--r--. 1 boincer umatlas       620 Nov 22 07:10 runtime_log
[2025-11-22 07:10:03] -rw-------. 1 boincer umatlas  13178880 Nov 22 07:10 result.tar.gz
[2025-11-22 07:10:03] -rw-r--r--. 1 boincer umatlas      9345 Nov 22 07:10 runtime_log.err
[2025-11-22 07:10:03] -rw-------. 1 boincer umatlas       660 Nov 22 07:10 NsbLDmUmHg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWbHKDm6IYfPm.diag
[2025-11-22 07:10:03] -rw-r--r--. 1 boincer umatlas     21310 Nov 22 07:10 stderr.txt
[2025-11-22 07:10:03] HITS file was successfully produced:
[2025-11-22 07:10:03] -rw-------. 1 boincer umatlas 923199238 Nov 22 07:08 shared/HITS.pool.root.1
[2025-11-22 07:10:03]  *** Contents of shared directory: ***
[2025-11-22 07:10:03] total 1314244
[2025-11-22 07:10:03] -rw-r--r--. 2 boincer umatlas 408783623 Nov 21 07:16 ATLAS.root_0
[2025-11-22 07:10:03] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 07:16 start_atlas.sh
[2025-11-22 07:10:03] -rw-r--r--. 2 boincer umatlas    590096 Nov 21 07:16 input.tar.gz
[2025-11-22 07:10:03] -rw-------. 1 boincer umatlas 923199238 Nov 22 07:08 HITS.pool.root.1
[2025-11-22 07:10:03] -rw-------. 1 boincer umatlas  13178880 Nov 22 07:10 result.tar.gz
07:10:04 (4165498): run_atlas exited; CPU time 329646.646651
07:10:04 (4165498): called boinc_finish(0)

</stderr_txt>
]]>

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