Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:48:21 (227482): wrapper (7.7.26015): starting
20:48:21 (227482): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 20:48:21] Arguments: --nthreads 8
[2025-11-20 20:48:21] Threads: 8
[2025-11-20 20:48:21] Checking for CVMFS
[2025-11-20 20:48:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 20:48:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 20:48:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 20:48:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 20:48:23] 2.13.2.0 2325231 22790 193056 153103 2 330 33096442 40960001 19379 16776704 0 155706976 99.734 112834040 49533 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 20:48:23] CVMFS is ok
[2025-11-20 20:48:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 20:48:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 20:48:23] Further information can be found at the LHC@home message board.
[2025-11-20 20:48:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 20:48:23] Checking for apptainer binary...
[2025-11-20 20:48:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 20:48:23] Running /usr/bin/apptainer --version
[2025-11-20 20:48:23] apptainer version 1.4.4-1.el9
[2025-11-20 20:48:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 20:48:24] c-208-37.aglt2.org
[2025-11-20 20:48:24] apptainer works
[2025-11-20 20:48:24] Set ATHENA_PROC_NUMBER=8
[2025-11-20 20:48:24] Set ATHENA_CORE_NUMBER=8
[2025-11-20 20:48:24] Starting ATLAS job with PandaID=6893839080
[2025-11-20 20:48:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 03:08:26]  *** The last 200 lines of the pilot log: ***
[2025-11-21 03:08:26] 2025-11-21 08:07:52,158 | INFO     | monitor loop #1488: job 0:6893839080 is in state 'finished'
[2025-11-21 03:08:26] 2025-11-21 08:07:52,158 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 03:08:26] 2025-11-21 08:07:52,957 | INFO     | time since job start (22709s) is within the limit (172800.0s)
[2025-11-21 03:08:26] 2025-11-21 08:07:53,950 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-21 03:08:26] 2025-11-21 08:07:53,956 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3792.7423203124986
[2025-11-21 03:08:26] 2025-11-21 08:07:53,970 | INFO     | using path: /tmp/boinchome/slots/15/PanDA_Pilot-6893839080/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 03:08:26] 2025-11-21 08:07:53,971 | INFO     | extracted standard info from prmon json
[2025-11-21 03:08:26] 2025-11-21 08:07:53,971 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 03:08:26] 2025-11-21 08:07:53,971 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 03:08:26] 2025-11-21 08:07:53,975 | INFO     | fitting pss+swap vs Time
[2025-11-21 03:08:26] 2025-11-21 08:07:53,976 | INFO     | sum of square deviations: 15706389823.256693
[2025-11-21 03:08:26] 2025-11-21 08:07:53,978 | INFO     | sum of deviations: 368077129382.2166
[2025-11-21 03:08:26] 2025-11-21 08:07:53,978 | INFO     | mean x: 1763701159.6891892
[2025-11-21 03:08:26] 2025-11-21 08:07:53,978 | INFO     | mean y: 2839796.8540540542
[2025-11-21 03:08:26] 2025-11-21 08:07:53,978 | INFO     | intersect: -41329259256.56657
[2025-11-21 03:08:26] 2025-11-21 08:07:53,978 | INFO     | chi2: 8.240722374777162
[2025-11-21 03:08:26] 2025-11-21 08:07:53,978 | INFO     | sum of square deviations: 15078313168.997252
[2025-11-21 03:08:26] 2025-11-21 08:07:53,980 | INFO     | sum of deviations: 453744662813.0855
[2025-11-21 03:08:26] 2025-11-21 08:07:53,980 | INFO     | mean x: 1763701007.2027397
[2025-11-21 03:08:26] 2025-11-21 08:07:53,980 | INFO     | mean y: 2860514.715068493
[2025-11-21 03:08:26] 2025-11-21 08:07:53,980 | INFO     | intersect: -53071373310.1768
[2025-11-21 03:08:26] 2025-11-21 08:07:53,981 | INFO     | chi2: 6.210537784680189
[2025-11-21 03:08:26] 2025-11-21 08:07:53,981 | INFO     | current chi2=6.210537784680189 (change=24.63600274061983 %)
[2025-11-21 03:08:26] 2025-11-21 08:07:53,981 | INFO     | right removable region: 364
[2025-11-21 03:08:26] 2025-11-21 08:07:53,981 | INFO     | sum of square deviations: 15078067093.589035
[2025-11-21 03:08:26] 2025-11-21 08:07:53,983 | INFO     | sum of deviations: 222952409830.53403
[2025-11-21 03:08:26] 2025-11-21 08:07:53,983 | INFO     | mean x: 1763701312.2054794
[2025-11-21 03:08:26] 2025-11-21 08:07:53,983 | INFO     | mean y: 2875010.2328767125
[2025-11-21 03:08:26] 2025-11-21 08:07:53,983 | INFO     | intersect: -26076161204.208595
[2025-11-21 03:08:26] 2025-11-21 08:07:53,983 | INFO     | chi2: 3.9521281062630385
[2025-11-21 03:08:26] 2025-11-21 08:07:53,983 | INFO     | current chi2=3.9521281062630385 (change=52.041484635381764 %)
[2025-11-21 03:08:26] 2025-11-21 08:07:53,983 | INFO     | sum of square deviations: 14466743448.663857
[2025-11-21 03:08:26] 2025-11-21 08:07:53,985 | INFO     | sum of deviations: 137184616447.54155
[2025-11-21 03:08:26] 2025-11-21 08:07:53,985 | INFO     | mean x: 1763701464.7194445
[2025-11-21 03:08:26] 2025-11-21 08:07:53,985 | INFO     | mean y: 2896322.7083333335
[2025-11-21 03:08:26] 2025-11-21 08:07:53,985 | INFO     | intersect: -16721856544.036594
[2025-11-21 03:08:26] 2025-11-21 08:07:53,986 | INFO     | chi2: 2.1996414398064164
[2025-11-21 03:08:26] 2025-11-21 08:07:53,986 | INFO     | current chi2=2.1996414398064164 (change=44.34286084197047 %)
[2025-11-21 03:08:26] 2025-11-21 08:07:53,986 | INFO     | sum of square deviations: 13872230675.97179
[2025-11-21 03:08:26] 2025-11-21 08:07:53,988 | INFO     | sum of deviations: 118224014680.21109
[2025-11-21 03:08:26] 2025-11-21 08:07:53,988 | INFO     | mean x: 1763701617.225352
[2025-11-21 03:08:26] 2025-11-21 08:07:53,988 | INFO     | mean y: 2901180.509859155
[2025-11-21 03:08:26] 2025-11-21 08:07:53,988 | INFO     | intersect: -15027982514.895184
[2025-11-21 03:08:26] 2025-11-21 08:07:53,988 | INFO     | chi2: 2.167957131279748
[2025-11-21 03:08:26] 2025-11-21 08:07:53,988 | INFO     | current chi2=2.167957131279748 (change=1.4404306062472128 %)
[2025-11-21 03:08:26] 2025-11-21 08:07:53,988 | INFO     | left removable region: 30
[2025-11-21 03:08:26] 2025-11-21 08:07:53,989 | INFO     | sum of square deviations: 11553111042.374193
[2025-11-21 03:08:26] 2025-11-21 08:07:53,990 | INFO     | sum of deviations: 164723669971.44916
[2025-11-21 03:08:26] 2025-11-21 08:07:53,990 | INFO     | mean x: 1763701891.751497
[2025-11-21 03:08:26] 2025-11-21 08:07:53,990 | INFO     | mean y: 2933930.1017964073
[2025-11-21 03:08:26] 2025-11-21 08:07:53,990 | INFO     | intersect: -25143837989.541317
[2025-11-21 03:08:26] 2025-11-21 08:07:53,991 | INFO     | chi2: 0.02517023645635706
[2025-11-21 03:08:26] 2025-11-21 08:07:53,991 | INFO     | current memory leak: 14.26 B/s (using 334 data points, chi2=0.03)
[2025-11-21 03:08:26] 2025-11-21 08:07:53,991 | INFO     | could have reported an average CPU frequency of 3774 MHz (16 samples)
[2025-11-21 03:08:26] 2025-11-21 08:07:53,991 | INFO     | ..............................
[2025-11-21 03:08:26] 2025-11-21 08:07:53,991 | INFO     | . Timing measurements:
[2025-11-21 03:08:26] 2025-11-21 08:07:53,991 | INFO     | . get job = 0 s
[2025-11-21 03:08:26] 2025-11-21 08:07:53,991 | INFO     | . initial setup = 3 s
[2025-11-21 03:08:26] 2025-11-21 08:07:53,991 | INFO     | . payload setup = 43 s
[2025-11-21 03:08:26] 2025-11-21 08:07:53,991 | INFO     | . stage-in = 0 s
[2025-11-21 03:08:26] 2025-11-21 08:07:53,991 | INFO     | . payload execution = 22587 s
[2025-11-21 03:08:26] 2025-11-21 08:07:53,991 | INFO     | . stage-out = 2 s
[2025-11-21 03:08:26] 2025-11-21 08:07:53,991 | INFO     | . log creation = 0 s
[2025-11-21 03:08:26] 2025-11-21 08:07:53,992 | INFO     | ..............................
[2025-11-21 03:08:26] 2025-11-21 08:07:54,046 | INFO     | 
[2025-11-21 03:08:26] 2025-11-21 08:07:54,046 | INFO     | job summary report
[2025-11-21 03:08:26] 2025-11-21 08:07:54,046 | INFO     | --------------------------------------------------
[2025-11-21 03:08:26] 2025-11-21 08:07:54,047 | INFO     | PanDA job id: 6893839080
[2025-11-21 03:08:26] 2025-11-21 08:07:54,047 | INFO     | task id: 47523449
[2025-11-21 03:08:26] 2025-11-21 08:07:54,047 | INFO     | errors: (none)
[2025-11-21 03:08:26] 2025-11-21 08:07:54,047 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 03:08:26] 2025-11-21 08:07:54,047 | INFO     | pilot state: finished 
[2025-11-21 03:08:26] 2025-11-21 08:07:54,047 | INFO     | transexitcode: 0
[2025-11-21 03:08:26] 2025-11-21 08:07:54,047 | INFO     | exeerrorcode: 0
[2025-11-21 03:08:26] 2025-11-21 08:07:54,047 | INFO     | exeerrordiag: 
[2025-11-21 03:08:26] 2025-11-21 08:07:54,047 | INFO     | exitcode: 0
[2025-11-21 03:08:26] 2025-11-21 08:07:54,047 | INFO     | exitmsg: OK
[2025-11-21 03:08:26] 2025-11-21 08:07:54,047 | INFO     | cpuconsumptiontime: 140414 s
[2025-11-21 03:08:26] 2025-11-21 08:07:54,047 | INFO     | nevents: 1000
[2025-11-21 03:08:26] 2025-11-21 08:07:54,047 | INFO     | neventsw: 0
[2025-11-21 03:08:26] 2025-11-21 08:07:54,047 | INFO     | pid: 270221
[2025-11-21 03:08:26] 2025-11-21 08:07:54,047 | INFO     | pgrp: 270221
[2025-11-21 03:08:26] 2025-11-21 08:07:54,047 | INFO     | corecount: 8
[2025-11-21 03:08:26] 2025-11-21 08:07:54,047 | INFO     | event service: False
[2025-11-21 03:08:26] 2025-11-21 08:07:54,047 | INFO     | sizes: {0: 2298808, 1: 2298836, 12: 2298836, 22: 2298864, 29: 2299154, 33: 2299182, 22633: 2335162, 22634: 2335161, 22636: 2344213, 22640: 2344297, 22649: 2344543}
[2025-11-21 03:08:26] 2025-11-21 08:07:54,047 | INFO     | --------------------------------------------------
[2025-11-21 03:08:26] 2025-11-21 08:07:54,047 | INFO     | 
[2025-11-21 03:08:26] 2025-11-21 08:07:54,047 | INFO     | executing command: ls -lF /tmp/boinchome/slots/15
[2025-11-21 03:08:26] 2025-11-21 08:07:54,075 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 03:08:26] 2025-11-21 08:07:54,076 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 03:08:26] 2025-11-21 08:07:54,076 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 03:08:26] 2025-11-21 08:07:54,076 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 03:08:26] 2025-11-21 08:07:54,076 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 03:08:26] 2025-11-21 08:07:54,076 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 03:08:26] 2025-11-21 08:07:54,076 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 03:08:26] 2025-11-21 08:07:54,076 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 03:08:26] 2025-11-21 08:07:54,076 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 03:08:26] 2025-11-21 08:07:54,076 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 03:08:26] 2025-11-21 08:07:54,076 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 03:08:26] 2025-11-21 08:07:54,076 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 03:08:26] 2025-11-21 08:07:54,076 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 03:08:26] 2025-11-21 08:07:54,076 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 03:08:26] 2025-11-21 08:07:54,076 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 03:08:26] 2025-11-21 08:07:54,076 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 03:08:26] 2025-11-21 08:07:54,076 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 03:08:26] 2025-11-21 08:07:54,076 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 03:08:26] 2025-11-21 08:07:54,076 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 03:08:26] 2025-11-21 08:07:54,077 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 03:08:26] 2025-11-21 08:07:54,077 | INFO     | job 6893839080 has completed (purged errors)
[2025-11-21 03:08:26] 2025-11-21 08:07:54,077 | INFO     | overall cleanup function is called
[2025-11-21 03:08:26] 2025-11-21 08:07:55,090 | INFO     | --- collectZombieJob: --- 10, [270221]
[2025-11-21 03:08:26] 2025-11-21 08:07:55,091 | INFO     | zombie collector waiting for pid 270221
[2025-11-21 03:08:26] 2025-11-21 08:07:55,091 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 03:08:26] 2025-11-21 08:07:55,091 | INFO     | collected zombie processes
[2025-11-21 03:08:26] 2025-11-21 08:07:55,091 | INFO     | will attempt to kill all subprocesses of pid=270221
[2025-11-21 03:08:26] 2025-11-21 08:07:55,467 | INFO     | process IDs to be killed: [270221] (in reverse order)
[2025-11-21 03:08:26] 2025-11-21 08:07:55,635 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 03:08:26] 2025-11-21 08:07:55,635 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 03:08:26] 2025-11-21 08:07:55,656 | INFO     | did not find any defunct processes belonging to 270221
[2025-11-21 03:08:26] 2025-11-21 08:07:55,679 | INFO     | did not find any defunct processes belonging to 270221
[2025-11-21 03:08:26] 2025-11-21 08:07:55,680 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 03:08:26] 2025-11-21 08:07:55,680 | INFO     | ready for new job
[2025-11-21 03:08:26] 2025-11-21 08:07:55,680 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 03:08:26] 2025-11-21 08:07:55,682 | INFO     | ***************************************
[2025-11-21 03:08:26] 2025-11-21 08:07:55,682 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 03:08:26] 2025-11-21 08:07:55,682 | INFO     | ***************************************
[2025-11-21 03:08:26] 2025-11-21 08:07:55,682 | INFO     | 
[2025-11-21 03:08:26] 2025-11-21 08:07:55,686 | INFO     | architecture information:
[2025-11-21 03:08:26] 2025-11-21 08:07:55,687 | INFO     | executing command: cat /etc/os-release
[2025-11-21 03:08:26] 2025-11-21 08:07:55,719 | INFO     | cat /etc/os-release:
[2025-11-21 03:08:26] NAME="CentOS Linux"
[2025-11-21 03:08:26] VERSION="7 (Core)"
[2025-11-21 03:08:26] ID="centos"
[2025-11-21 03:08:26] ID_LIKE="rhel fedora"
[2025-11-21 03:08:26] VERSION_ID="7"
[2025-11-21 03:08:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 03:08:26] ANSI_COLOR="0;31"
[2025-11-21 03:08:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 03:08:26] HOME_URL="https://www.centos.org/"
[2025-11-21 03:08:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 03:08:26] 
[2025-11-21 03:08:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 03:08:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 03:08:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 03:08:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 03:08:26] 
[2025-11-21 03:08:26] 2025-11-21 08:07:55,720 | INFO     | ***************************************
[2025-11-21 03:08:26] 2025-11-21 08:07:56,223 | INFO     | executing command: df -mP /tmp/boinchome/slots/15
[2025-11-21 03:08:26] 2025-11-21 08:07:56,248 | INFO     | sufficient remaining disk space (153866993664 B)
[2025-11-21 03:08:26] 2025-11-21 08:07:56,248 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 03:08:26] 2025-11-21 08:07:56,249 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 03:08:26] 2025-11-21 08:07:56,249 | INFO     | update_server=False
[2025-11-21 03:08:26] 2025-11-21 08:07:56,249 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 03:08:26] 2025-11-21 08:07:56,249 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 03:08:26] 2025-11-21 08:07:56,249 | INFO     | aborting loop
[2025-11-21 03:08:26] 2025-11-21 08:07:56,519 | INFO     | all payload control threads have been joined
[2025-11-21 03:08:26] 2025-11-21 08:07:56,716 | INFO     | all data control threads have been joined
[2025-11-21 03:08:26] 2025-11-21 08:07:56,756 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 03:08:26] 2025-11-21 08:07:56,761 | INFO     | all job control threads have been joined
[2025-11-21 03:08:26] 2025-11-21 08:07:57,254 | INFO     | [job] retrieve thread has finished
[2025-11-21 03:08:26] 2025-11-21 08:07:57,254 | INFO     | [job] job monitor thread has finished
[2025-11-21 03:08:26] 2025-11-21 08:07:57,429 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 03:08:26] 2025-11-21 08:07:57,525 | INFO     | [payload] control thread has finished
[2025-11-21 03:08:26] 2025-11-21 08:07:57,579 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 03:08:26] 2025-11-21 08:07:57,579 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 03:08:26] 2025-11-21 08:07:57,720 | INFO     | [data] control thread has finished
[2025-11-21 03:08:26] 2025-11-21 08:07:57,728 | INFO     | [payload] failed_post thread has finished
[2025-11-21 03:08:26] 2025-11-21 08:07:57,766 | INFO     | [job] control thread has finished
[2025-11-21 03:08:26] 2025-11-21 08:07:57,946 | INFO     | [job] validate thread has finished
[2025-11-21 03:08:26] 2025-11-21 08:07:58,085 | INFO     | [data] copytool_in thread has finished
[2025-11-21 03:08:26] 2025-11-21 08:07:58,172 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 03:08:26] 2025-11-21 08:07:58,738 | INFO     | [payload] validate_post thread has finished
[2025-11-21 03:08:26] 2025-11-21 08:07:58,761 | INFO     | [data] copytool_out thread has finished
[2025-11-21 03:08:26] 2025-11-21 08:07:59,057 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 03:08:26] 2025-11-21 08:07:59,624 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 03:08:26] 2025-11-21 08:08:00,063 | INFO     | [job] queue monitor thread has finished
[2025-11-21 03:08:26] 2025-11-21 08:08:01,445 | INFO     | [monitor] cgroup control has ended
[2025-11-21 03:08:26] 2025-11-21 08:08:03,630 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 03:08:26] 2025-11-21 08:08:04,561 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139855761319744)>', '<ExcThread(monitor, started 139855132616448)>']
[2025-11-21 03:08:26] 2025-11-21 08:08:09,586 | INFO     | all workflow threads have been joined
[2025-11-21 03:08:26] 2025-11-21 08:08:09,586 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 03:08:26] 2025-11-21 08:08:09,586 | INFO     | traces error code: 0
[2025-11-21 03:08:26] 2025-11-21 08:08:09,586 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 03:08:26] 2025-11-21 08:08:26,571 | INFO     | PID=234634 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-21 03:08:26] 2025-11-21 08:08:26,571 | INFO     | .. there are 27 such processes running
[2025-11-21 03:08:26] 2025-11-21 08:08:26,571 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 03:08:26] 2025-11-21 08:08:26,572 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 03:08:26] 2025-11-21 08:08:26,572 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 03:08:26] 2025-11-21 08:08:26,572 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 03:08:26] 2025-11-21 08:08:26,572 | INFO     | [monitor] control thread has ended
[2025-11-21 03:08:26] 2025-11-21 08:08:26,659 [wrapper] ==== pilot stdout END ====
[2025-11-21 03:08:26] 2025-11-21 08:08:26,665 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 03:08:26] 2025-11-21 08:08:26,672 [wrapper] pilotpid: 234634
[2025-11-21 03:08:26] 2025-11-21 08:08:26,676 [wrapper] Pilot exit status: 0
[2025-11-21 03:08:26] 2025-11-21 08:08:26,699 [wrapper] pandaids: 6893839080
[2025-11-21 03:08:26] 2025-11-21 08:08:26,836 [wrapper] cleanup supervisor_pilot 2940166 234635
[2025-11-21 03:08:26] 2025-11-21 08:08:26,839 [wrapper] Test setup, not cleaning
[2025-11-21 03:08:26] 2025-11-21 08:08:26,842 [wrapper] apfmon messages muted
[2025-11-21 03:08:26] 2025-11-21 08:08:26,849 [wrapper] ==== wrapper stdout END ====
[2025-11-21 03:08:26] 2025-11-21 08:08:26,852 [wrapper] ==== wrapper stderr END ====
[2025-11-21 03:08:26]  *** Error codes and diagnostics ***
[2025-11-21 03:08:26]     "exeErrorCode": 0,
[2025-11-21 03:08:26]     "exeErrorDiag": "",
[2025-11-21 03:08:26]     "pilotErrorCode": 0,
[2025-11-21 03:08:26]     "pilotErrorDiag": "",
[2025-11-21 03:08:26]  *** Listing of results directory ***
[2025-11-21 03:08:26] total 1314396
[2025-11-21 03:08:26] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 05:06 pilot3.tar.gz
[2025-11-21 03:08:26] -rwx------. 1 boincer umatlas     36292 Nov 20 05:18 runpilot2-wrapper.sh
[2025-11-21 03:08:26] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 05:19 queuedata.json
[2025-11-21 03:08:26] -rw-r--r--. 1 boincer umatlas       100 Nov 20 20:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 03:08:26] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 20 20:48 run_atlas
[2025-11-21 03:08:26] -rw-r--r--. 1 boincer umatlas       105 Nov 20 20:48 job.xml
[2025-11-21 03:08:26] -rw-r--r--. 2 boincer umatlas 408503414 Nov 20 20:48 EVNT.47493127._000145.pool.root.1
[2025-11-21 03:08:26] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 20:48 start_atlas.sh
[2025-11-21 03:08:26] drwxrwx--x. 2 boincer umatlas      4096 Nov 20 20:48 shared
[2025-11-21 03:08:26] -rw-r--r--. 2 boincer umatlas    590101 Nov 20 20:48 input.tar.gz
[2025-11-21 03:08:26] -rw-r--r--. 1 boincer umatlas         0 Nov 20 20:48 boinc_lockfile
[2025-11-21 03:08:26] -rw-r--r--. 1 boincer umatlas      2786 Nov 20 20:48 pandaJob.out
[2025-11-21 03:08:26] -rw-------. 1 boincer umatlas        57 Nov 20 20:48 setup.sh.local
[2025-11-21 03:08:26] -rw-------. 1 boincer umatlas    989817 Nov 20 20:49 agis_schedconf.cvmfs.json
[2025-11-21 03:08:26] drwx------. 5 boincer umatlas      4096 Nov 20 20:49 pilot3
[2025-11-21 03:08:26] -rw-r--r--. 1 boincer umatlas      7178 Nov 21 03:02 init_data.xml
[2025-11-21 03:08:26] -rw-r--r--. 1 boincer umatlas       533 Nov 21 03:02 boinc_task_state.xml
[2025-11-21 03:08:26] -rw-------. 1 boincer umatlas 924089876 Nov 21 03:07 HITS.47523449._001449.pool.root.1
[2025-11-21 03:08:26] -rw-------. 1 boincer umatlas      1046 Nov 21 03:07 memory_monitor_summary.json
[2025-11-21 03:08:26] -rw-------. 1 boincer umatlas   1526164 Nov 21 03:07 agis_ddmendpoints.agis.ALL.json
[2025-11-21 03:08:26] -rw-------. 1 boincer umatlas   1665304 Nov 21 03:07 log.47523449._001449.job.log.tgz.1
[2025-11-21 03:08:26] -rw-------. 1 boincer umatlas      8583 Nov 21 03:07 heartbeat.json
[2025-11-21 03:08:26] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 03:08 boinc_mmap_file
[2025-11-21 03:08:26] -rw-r--r--. 1 boincer umatlas        29 Nov 21 03:08 wrapper_checkpoint.txt
[2025-11-21 03:08:26] -rw-------. 1 boincer umatlas        95 Nov 21 03:08 pilot_heartbeat.json
[2025-11-21 03:08:26] -rw-------. 1 boincer umatlas       822 Nov 21 03:08 pilotlog.txt
[2025-11-21 03:08:26] -rw-------. 1 boincer umatlas   3050965 Nov 21 03:08 log.47523449._001449.job.log.1
[2025-11-21 03:08:26] -rw-------. 1 boincer umatlas       353 Nov 21 03:08 output.list
[2025-11-21 03:08:26] -rw-r--r--. 1 boincer umatlas       620 Nov 21 03:08 runtime_log
[2025-11-21 03:08:26] -rw-------. 1 boincer umatlas   4730880 Nov 21 03:08 result.tar.gz
[2025-11-21 03:08:26] -rw-r--r--. 1 boincer umatlas      9361 Nov 21 03:08 runtime_log.err
[2025-11-21 03:08:26] -rw-------. 1 boincer umatlas       659 Nov 21 03:08 rKJODmZvGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmhNGKDmeCT6km.diag
[2025-11-21 03:08:26] -rw-r--r--. 1 boincer umatlas     21389 Nov 21 03:08 stderr.txt
[2025-11-21 03:08:27] HITS file was successfully produced:
[2025-11-21 03:08:27] -rw-------. 1 boincer umatlas 924089876 Nov 21 03:07 shared/HITS.pool.root.1
[2025-11-21 03:08:27]  *** Contents of shared directory: ***
[2025-11-21 03:08:27] total 1306588
[2025-11-21 03:08:27] -rw-r--r--. 2 boincer umatlas 408503414 Nov 20 20:48 ATLAS.root_0
[2025-11-21 03:08:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 20:48 start_atlas.sh
[2025-11-21 03:08:27] -rw-r--r--. 2 boincer umatlas    590101 Nov 20 20:48 input.tar.gz
[2025-11-21 03:08:27] -rw-------. 1 boincer umatlas 924089876 Nov 21 03:07 HITS.pool.root.1
[2025-11-21 03:08:27] -rw-------. 1 boincer umatlas   4730880 Nov 21 03:08 result.tar.gz
03:08:28 (227482): run_atlas exited; CPU time 140725.271010
03:08:28 (227482): called boinc_finish(0)

</stderr_txt>
]]>

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