Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:06:02 (2330814): wrapper (7.7.26015): starting
04:06:02 (2330814): wrapper: running run_atlas (--nthreads 4)
[2025-11-27 04:06:02] Arguments: --nthreads 4
[2025-11-27 04:06:02] Threads: 4
[2025-11-27 04:06:02] Checking for CVMFS
[2025-11-27 04:06:02] No cvmfs_config command found, will try listing directly
[2025-11-27 04:06:02] CVMFS is ok
[2025-11-27 04:06:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 04:06:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 04:06:02] Further information can be found at the LHC@home message board.
[2025-11-27 04:06:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 04:06:02] Checking for apptainer binary...
[2025-11-27 04:06:02] which: no apptainer in ((null))
[2025-11-27 04:06:02] apptainer is not installed, using version from CVMFS
[2025-11-27 04:06:02] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 04:06:02] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot124/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2025-11-27 04:06:02] apptainer works
[2025-11-27 04:06:02] Set ATHENA_PROC_NUMBER=4
[2025-11-27 04:06:02] Set ATHENA_CORE_NUMBER=4
[2025-11-27 04:06:02] Starting ATLAS job with PandaID=6893870542
[2025-11-27 04:06:02] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot124/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 19:47:12]  *** The last 200 lines of the pilot log: ***
[2025-11-27 19:47:12] 2025-11-27 18:45:54,156 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:47:12] 2025-11-27 18:45:54,326 | INFO     | PID=2334870 has CPU usage=21.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 19:47:12] 2025-11-27 18:45:54,326 | INFO     | .. there are 5 such processes running
[2025-11-27 19:47:12] 2025-11-27 18:45:54,686 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 19:47:12] 2025-11-27 18:45:54,706 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2737.754578124999
[2025-11-27 19:47:12] 2025-11-27 18:45:54,730 | INFO     | using path: /scratch/boinc/var/slot124/slots/0/PanDA_Pilot-6893870542/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 19:47:12] 2025-11-27 18:45:54,731 | INFO     | extracted standard info from prmon json
[2025-11-27 19:47:12] 2025-11-27 18:45:54,731 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 19:47:12] 2025-11-27 18:45:54,731 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 19:47:12] 2025-11-27 18:45:54,746 | INFO     | fitting pss+swap vs Time
[2025-11-27 19:47:12] 2025-11-27 18:45:54,747 | INFO     | sum of square deviations: 244621012696.99872
[2025-11-27 19:47:12] 2025-11-27 18:45:54,766 | INFO     | sum of deviations: 669338590721.6317
[2025-11-27 19:47:12] 2025-11-27 18:45:54,766 | INFO     | mean x: 1764240965.5010822
[2025-11-27 19:47:12] 2025-11-27 18:45:54,766 | INFO     | mean y: 2273817.866883117
[2025-11-27 19:47:12] 2025-11-27 18:45:54,766 | INFO     | intersect: -4825089737.383224
[2025-11-27 19:47:12] 2025-11-27 18:45:54,767 | INFO     | chi2: 4.131313744853613
[2025-11-27 19:47:12] 2025-11-27 18:45:54,768 | INFO     | sum of square deviations: 240671338946.99872
[2025-11-27 19:47:12] 2025-11-27 18:45:54,787 | INFO     | sum of deviations: 859562346581.3475
[2025-11-27 19:47:12] 2025-11-27 18:45:54,787 | INFO     | mean x: 1764240813.0010881
[2025-11-27 19:47:12] 2025-11-27 18:45:54,787 | INFO     | mean y: 2281155.6517954296
[2025-11-27 19:47:12] 2025-11-27 18:45:54,788 | INFO     | intersect: -6298739064.6734915
[2025-11-27 19:47:12] 2025-11-27 18:45:54,788 | INFO     | chi2: 2.051048174417525
[2025-11-27 19:47:12] 2025-11-27 18:45:54,789 | INFO     | current chi2=2.051048174417525 (change=50.35360901910389 %)
[2025-11-27 19:47:12] 2025-11-27 18:45:54,790 | INFO     | sum of square deviations: 236764410184.4991
[2025-11-27 19:47:12] 2025-11-27 18:45:54,808 | INFO     | sum of deviations: 870816313736.2576
[2025-11-27 19:47:12] 2025-11-27 18:45:54,808 | INFO     | mean x: 1764240660.501094
[2025-11-27 19:47:12] 2025-11-27 18:45:54,808 | INFO     | mean y: 2281592.7417943105
[2025-11-27 19:47:12] 2025-11-27 18:45:54,808 | INFO     | intersect: -6486571809.355232
[2025-11-27 19:47:12] 2025-11-27 18:45:54,809 | INFO     | chi2: 2.007384703673652
[2025-11-27 19:47:12] 2025-11-27 18:45:54,809 | INFO     | current chi2=2.007384703673652 (change=2.1288369180442657 %)
[2025-11-27 19:47:12] 2025-11-27 18:45:54,810 | INFO     | right removable region: 913
[2025-11-27 19:47:12] 2025-11-27 18:45:54,811 | INFO     | sum of square deviations: 240671338336.99875
[2025-11-27 19:47:12] 2025-11-27 18:45:54,829 | INFO     | sum of deviations: 497790133111.02325
[2025-11-27 19:47:12] 2025-11-27 18:45:54,829 | INFO     | mean x: 1764241118.0010881
[2025-11-27 19:47:12] 2025-11-27 18:45:54,829 | INFO     | mean y: 2280429.9760609358
[2025-11-27 19:47:12] 2025-11-27 18:45:54,829 | INFO     | intersect: -3646769876.7122107
[2025-11-27 19:47:12] 2025-11-27 18:45:54,830 | INFO     | chi2: 2.266176243088835
[2025-11-27 19:47:12] 2025-11-27 18:45:54,830 | INFO     | current chi2=2.266176243088835 (change=45.14635336249115 %)
[2025-11-27 19:47:12] 2025-11-27 18:45:54,831 | INFO     | sum of square deviations: 236764408964.4991
[2025-11-27 19:47:12] 2025-11-27 18:45:54,849 | INFO     | sum of deviations: 463782826587.8827
[2025-11-27 19:47:12] 2025-11-27 18:45:54,850 | INFO     | mean x: 1764241270.501094
[2025-11-27 19:47:12] 2025-11-27 18:45:54,850 | INFO     | mean y: 2281756.6181619256
[2025-11-27 19:47:12] 2025-11-27 18:45:54,850 | INFO     | intersect: -3453578888.9684844
[2025-11-27 19:47:12] 2025-11-27 18:45:54,851 | INFO     | chi2: 2.2324029414153976
[2025-11-27 19:47:12] 2025-11-27 18:45:54,851 | INFO     | current chi2=2.2324029414153976 (change=1.4903210540855303 %)
[2025-11-27 19:47:12] 2025-11-27 18:45:54,851 | INFO     | left removable region: 20
[2025-11-27 19:47:12] 2025-11-27 18:45:54,852 | INFO     | sum of square deviations: 220816833734.99884
[2025-11-27 19:47:12] 2025-11-27 18:45:54,870 | INFO     | sum of deviations: 614302886290.943
[2025-11-27 19:47:12] 2025-11-27 18:45:54,870 | INFO     | mean x: 1764241240.0011199
[2025-11-27 19:47:12] 2025-11-27 18:45:54,870 | INFO     | mean y: 2291648.0571108623
[2025-11-27 19:47:12] 2025-11-27 18:45:54,870 | INFO     | intersect: -4905751219.484579
[2025-11-27 19:47:12] 2025-11-27 18:45:54,871 | INFO     | chi2: 0.07866392719807587
[2025-11-27 19:47:12] 2025-11-27 18:45:54,871 | INFO     | current memory leak: 2.78 B/s (using 893 data points, chi2=0.08)
[2025-11-27 19:47:12] 2025-11-27 18:45:54,872 | INFO     | could have reported an average CPU frequency of 2697 MHz (35 samples)
[2025-11-27 19:47:12] 2025-11-27 18:45:54,872 | INFO     | ..............................
[2025-11-27 19:47:12] 2025-11-27 18:45:54,872 | INFO     | . Timing measurements:
[2025-11-27 19:47:12] 2025-11-27 18:45:54,872 | INFO     | . get job = 0 s
[2025-11-27 19:47:12] 2025-11-27 18:45:54,872 | INFO     | . initial setup = 1 s
[2025-11-27 19:47:12] 2025-11-27 18:45:54,872 | INFO     | . payload setup = 10 s
[2025-11-27 19:47:12] 2025-11-27 18:45:54,873 | INFO     | . stage-in = 0 s
[2025-11-27 19:47:12] 2025-11-27 18:45:54,873 | INFO     | . payload execution = 56330 s
[2025-11-27 19:47:12] 2025-11-27 18:45:54,873 | INFO     | . stage-out = 2 s
[2025-11-27 19:47:12] 2025-11-27 18:45:54,873 | INFO     | . log creation = 0 s
[2025-11-27 19:47:12] 2025-11-27 18:45:54,873 | INFO     | ..............................
[2025-11-27 19:47:12] 2025-11-27 18:45:54,967 | INFO     | 
[2025-11-27 19:47:12] 2025-11-27 18:45:54,967 | INFO     | job summary report
[2025-11-27 19:47:12] 2025-11-27 18:45:54,968 | INFO     | --------------------------------------------------
[2025-11-27 19:47:12] 2025-11-27 18:45:54,968 | INFO     | PanDA job id: 6893870542
[2025-11-27 19:47:12] 2025-11-27 18:45:54,968 | INFO     | task id: 47523449
[2025-11-27 19:47:12] 2025-11-27 18:45:54,968 | INFO     | errors: (none)
[2025-11-27 19:47:12] 2025-11-27 18:45:54,968 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 19:47:12] 2025-11-27 18:45:54,968 | INFO     | pilot state: finished 
[2025-11-27 19:47:12] 2025-11-27 18:45:54,968 | INFO     | transexitcode: 0
[2025-11-27 19:47:12] 2025-11-27 18:45:54,968 | INFO     | exeerrorcode: 0
[2025-11-27 19:47:12] 2025-11-27 18:45:54,968 | INFO     | exeerrordiag: 
[2025-11-27 19:47:12] 2025-11-27 18:45:54,968 | INFO     | exitcode: 0
[2025-11-27 19:47:12] 2025-11-27 18:45:54,968 | INFO     | exitmsg: OK
[2025-11-27 19:47:12] 2025-11-27 18:45:54,969 | INFO     | cpuconsumptiontime: 226746 s
[2025-11-27 19:47:12] 2025-11-27 18:45:54,969 | INFO     | nevents: 1000
[2025-11-27 19:47:12] 2025-11-27 18:45:54,969 | INFO     | neventsw: 0
[2025-11-27 19:47:12] 2025-11-27 18:45:54,969 | INFO     | pid: 2342768
[2025-11-27 19:47:12] 2025-11-27 18:45:54,969 | INFO     | pgrp: 2342768
[2025-11-27 19:47:12] 2025-11-27 18:45:54,969 | INFO     | corecount: 4
[2025-11-27 19:47:12] 2025-11-27 18:45:54,969 | INFO     | event service: False
[2025-11-27 19:47:12] 2025-11-27 18:45:54,969 | INFO     | sizes: {0: 2284154, 1: 2284353, 8: 2284615, 11: 2284643, 56343: 2337767, 56347: 2346785, 56350: 2346969, 56358: 2347215}
[2025-11-27 19:47:12] 2025-11-27 18:45:54,969 | INFO     | --------------------------------------------------
[2025-11-27 19:47:12] 2025-11-27 18:45:54,969 | INFO     | 
[2025-11-27 19:47:12] 2025-11-27 18:45:54,969 | INFO     | executing command: ls -lF /scratch/boinc/var/slot124/slots/0
[2025-11-27 19:47:12] 2025-11-27 18:45:55,001 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 19:47:12] 2025-11-27 18:45:55,002 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 19:47:12] 2025-11-27 18:45:55,002 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 19:47:12] 2025-11-27 18:45:55,002 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 19:47:12] 2025-11-27 18:45:55,002 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 19:47:12] 2025-11-27 18:45:55,002 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 19:47:12] 2025-11-27 18:45:55,002 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 19:47:12] 2025-11-27 18:45:55,002 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 19:47:12] 2025-11-27 18:45:55,002 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 19:47:12] 2025-11-27 18:45:55,002 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 19:47:12] 2025-11-27 18:45:55,003 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 19:47:12] 2025-11-27 18:45:55,003 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 19:47:12] 2025-11-27 18:45:55,003 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 19:47:12] 2025-11-27 18:45:55,003 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 19:47:12] 2025-11-27 18:45:55,003 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 19:47:12] 2025-11-27 18:45:55,003 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 19:47:12] 2025-11-27 18:45:55,003 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 19:47:12] 2025-11-27 18:45:55,003 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 19:47:12] 2025-11-27 18:45:55,003 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 19:47:12] 2025-11-27 18:45:55,003 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 19:47:12] 2025-11-27 18:45:55,004 | INFO     | job 6893870542 has completed (purged errors)
[2025-11-27 19:47:12] 2025-11-27 18:45:55,004 | INFO     | overall cleanup function is called
[2025-11-27 19:47:12] 2025-11-27 18:45:56,021 | INFO     | --- collectZombieJob: --- 10, [2342768]
[2025-11-27 19:47:12] 2025-11-27 18:45:56,021 | INFO     | zombie collector waiting for pid 2342768
[2025-11-27 19:47:12] 2025-11-27 18:45:56,021 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 19:47:12] 2025-11-27 18:45:56,021 | INFO     | collected zombie processes
[2025-11-27 19:47:12] 2025-11-27 18:45:56,021 | INFO     | will attempt to kill all subprocesses of pid=2342768
[2025-11-27 19:47:12] 2025-11-27 18:45:56,782 | INFO     | process IDs to be killed: [2342768] (in reverse order)
[2025-11-27 19:47:12] 2025-11-27 18:45:57,020 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 19:47:12] 2025-11-27 18:45:57,020 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 19:47:12] 2025-11-27 18:45:57,052 | INFO     | did not find any defunct processes belonging to 2342768
[2025-11-27 19:47:12] 2025-11-27 18:45:57,083 | INFO     | did not find any defunct processes belonging to 2342768
[2025-11-27 19:47:12] 2025-11-27 18:45:57,085 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 19:47:12] 2025-11-27 18:45:57,085 | INFO     | ready for new job
[2025-11-27 19:47:12] 2025-11-27 18:45:57,085 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 19:47:12] 2025-11-27 18:45:57,091 | INFO     | ***************************************
[2025-11-27 19:47:12] 2025-11-27 18:45:57,091 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 19:47:12] 2025-11-27 18:45:57,092 | INFO     | ***************************************
[2025-11-27 19:47:12] 2025-11-27 18:45:57,092 | INFO     | 
[2025-11-27 19:47:12] 2025-11-27 18:45:57,100 | INFO     | architecture information:
[2025-11-27 19:47:12] 2025-11-27 18:45:57,101 | INFO     | executing command: cat /etc/os-release
[2025-11-27 19:47:12] 2025-11-27 18:45:57,122 | INFO     | cat /etc/os-release:
[2025-11-27 19:47:12] NAME="CentOS Linux"
[2025-11-27 19:47:12] VERSION="7 (Core)"
[2025-11-27 19:47:12] ID="centos"
[2025-11-27 19:47:12] ID_LIKE="rhel fedora"
[2025-11-27 19:47:12] VERSION_ID="7"
[2025-11-27 19:47:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 19:47:12] ANSI_COLOR="0;31"
[2025-11-27 19:47:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 19:47:12] HOME_URL="https://www.centos.org/"
[2025-11-27 19:47:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 19:47:12] 
[2025-11-27 19:47:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 19:47:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 19:47:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 19:47:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 19:47:12] 
[2025-11-27 19:47:12] 2025-11-27 18:45:57,122 | INFO     | ***************************************
[2025-11-27 19:47:12] 2025-11-27 18:45:57,625 | INFO     | executing command: df -mP /scratch/boinc/var/slot124/slots/0
[2025-11-27 19:47:12] 2025-11-27 18:45:57,650 | INFO     | sufficient remaining disk space (3291021836288 B)
[2025-11-27 19:47:12] 2025-11-27 18:45:57,650 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 19:47:12] 2025-11-27 18:45:57,651 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 19:47:12] 2025-11-27 18:45:57,651 | INFO     | update_server=False
[2025-11-27 19:47:12] 2025-11-27 18:45:57,651 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 19:47:12] 2025-11-27 18:45:57,651 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 19:47:12] 2025-11-27 18:45:57,652 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 19:47:12] 2025-11-27 18:45:57,667 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:47:12] 2025-11-27 18:45:57,667 | INFO     | aborting loop
[2025-11-27 19:47:12] 2025-11-27 18:45:58,103 | INFO     | all data control threads have been joined
[2025-11-27 19:47:12] 2025-11-27 18:45:58,173 | INFO     | all payload control threads have been joined
[2025-11-27 19:47:12] 2025-11-27 18:45:58,652 | INFO     | [job] retrieve thread has finished
[2025-11-27 19:47:12] 2025-11-27 18:45:58,672 | INFO     | [job] job monitor thread has finished
[2025-11-27 19:47:12] 2025-11-27 18:45:58,695 | INFO     | all job control threads have been joined
[2025-11-27 19:47:12] 2025-11-27 18:45:58,738 | INFO     | [payload] validate_post thread has finished
[2025-11-27 19:47:12] 2025-11-27 18:45:59,039 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 19:47:12] 2025-11-27 18:45:59,105 | INFO     | [data] control thread has finished
[2025-11-27 19:47:12] 2025-11-27 18:45:59,178 | INFO     | [payload] control thread has finished
[2025-11-27 19:47:12] 2025-11-27 18:45:59,614 | INFO     | [payload] failed_post thread has finished
[2025-11-27 19:47:12] 2025-11-27 18:45:59,615 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 19:47:12] 2025-11-27 18:45:59,649 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 19:47:12] 2025-11-27 18:45:59,651 | INFO     | [data] copytool_in thread has finished
[2025-11-27 19:47:12] 2025-11-27 18:45:59,653 | INFO     | [data] copytool_out thread has finished
[2025-11-27 19:47:12] 2025-11-27 18:45:59,701 | INFO     | [job] control thread has finished
[2025-11-27 19:47:12] 2025-11-27 18:45:59,741 | INFO     | [job] validate thread has finished
[2025-11-27 19:47:12] 2025-11-27 18:45:59,977 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:47:12] 2025-11-27 18:46:00,051 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 19:47:12] 2025-11-27 18:46:00,982 | INFO     | [job] queue monitor thread has finished
[2025-11-27 19:47:12] 2025-11-27 18:46:01,659 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 19:47:12] 2025-11-27 18:46:27,349 | INFO     | PID=2334870 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 19:47:12] 2025-11-27 18:46:27,349 | INFO     | .. there are 5 such processes running
[2025-11-27 19:47:12] 2025-11-27 18:46:27,350 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 19:47:12] 2025-11-27 18:46:27,350 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 19:47:12] 2025-11-27 18:46:27,350 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 19:47:12] 2025-11-27 18:46:48,331 | INFO     | [monitor] cgroup control has ended
[2025-11-27 19:47:12] 2025-11-27 18:46:49,164 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22745594414912)>', '<ExcThread(monitor, started 22745354036992)>']
[2025-11-27 19:47:12] 2025-11-27 18:46:49,462 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 19:47:12] 2025-11-27 18:46:49,463 | INFO     | [monitor] control thread has ended
[2025-11-27 19:47:12] 2025-11-27 18:46:54,189 | INFO     | all workflow threads have been joined
[2025-11-27 19:47:12] 2025-11-27 18:46:54,190 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 19:47:12] 2025-11-27 18:46:54,190 | INFO     | traces error code: 0
[2025-11-27 19:47:12] 2025-11-27 18:46:54,190 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 19:47:12] 2025-11-27 18:46:54,379 [wrapper] ==== pilot stdout END ====
[2025-11-27 19:47:12] 2025-11-27 18:46:54,383 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 19:47:12] 2025-11-27 18:46:54,386 [wrapper] pilotpid: 2334870
[2025-11-27 19:47:12] 2025-11-27 18:46:54,390 [wrapper] Pilot exit status: 0
[2025-11-27 19:47:12] 2025-11-27 18:46:54,402 [wrapper] pandaids: 6893870542
[2025-11-27 19:47:12] 2025-11-27 18:46:54,573 [wrapper] cleanup supervisor_pilot 3628732 2334871
[2025-11-27 19:47:12] 2025-11-27 18:46:54,578 [wrapper] Test setup, not cleaning
[2025-11-27 19:47:12] 2025-11-27 18:46:54,581 [wrapper] apfmon messages muted
[2025-11-27 19:47:12] 2025-11-27 18:46:54,585 [wrapper] ==== wrapper stdout END ====
[2025-11-27 19:47:12] 2025-11-27 18:46:54,588 [wrapper] ==== wrapper stderr END ====
[2025-11-27 19:47:12]  *** Error codes and diagnostics ***
[2025-11-27 19:47:12]     "exeErrorCode": 0,
[2025-11-27 19:47:12]     "exeErrorDiag": "",
[2025-11-27 19:47:12]     "pilotErrorCode": 0,
[2025-11-27 19:47:12]     "pilotErrorDiag": "",
[2025-11-27 19:47:12]  *** Listing of results directory ***
[2025-11-27 19:47:12] total 1315616
[2025-11-27 19:47:12] -rw-r--r-- 1 boinc boinc    576529 Nov 20 15:50 pilot3.tar.gz
[2025-11-27 19:47:12] -rw-r--r-- 1 boinc boinc      5112 Nov 20 15:58 queuedata.json
[2025-11-27 19:47:12] -rwx------ 1 boinc boinc     36292 Nov 20 15:59 runpilot2-wrapper.sh
[2025-11-27 19:47:12] -rw-r--r-- 1 boinc boinc       100 Nov 27 04:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 19:47:12] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 04:05 run_atlas
[2025-11-27 19:47:12] -rw-r--r-- 1 boinc boinc       105 Nov 27 04:05 job.xml
[2025-11-27 19:47:12] -rw-r--r-- 1 boinc boinc      6688 Nov 27 04:06 init_data.xml
[2025-11-27 19:47:12] -rw-r--r-- 2 boinc boinc 407902014 Nov 27 04:06 EVNT.47493127._000661.pool.root.1
[2025-11-27 19:47:12] -rw-r--r-- 2 boinc boinc     15847 Nov 27 04:06 start_atlas.sh
[2025-11-27 19:47:12] drwxrwx--x 2 boinc boinc      4096 Nov 27 04:06 shared
[2025-11-27 19:47:12] -rw-r--r-- 2 boinc boinc    590095 Nov 27 04:06 input.tar.gz
[2025-11-27 19:47:12] -rw-r--r-- 1 boinc boinc         0 Nov 27 04:06 boinc_lockfile
[2025-11-27 19:47:12] -rw-r--r-- 1 boinc boinc      2784 Nov 27 04:06 pandaJob.out
[2025-11-27 19:47:12] -rw------- 1 boinc boinc    991554 Nov 27 04:06 agis_schedconf.cvmfs.json
[2025-11-27 19:47:12] drwx------ 5 boinc boinc      4096 Nov 27 04:06 pilot3
[2025-11-27 19:47:12] -rw-r--r-- 1 boinc boinc       532 Nov 27 19:37 boinc_task_state.xml
[2025-11-27 19:47:12] -rw------- 1 boinc boinc 916460099 Nov 27 19:45 HITS.47523449._006609.pool.root.1
[2025-11-27 19:47:12] -rw------- 1 boinc boinc      1040 Nov 27 19:45 memory_monitor_summary.json
[2025-11-27 19:47:12] -rw------- 1 boinc boinc   1516240 Nov 27 19:45 agis_ddmendpoints.agis.ALL.json
[2025-11-27 19:47:12] -rw------- 1 boinc boinc   1676429 Nov 27 19:45 log.47523449._006609.job.log.tgz.1
[2025-11-27 19:47:12] -rw------- 1 boinc boinc      8595 Nov 27 19:45 heartbeat.json
[2025-11-27 19:47:12] -rw------- 1 boinc boinc        95 Nov 27 19:46 pilot_heartbeat.json
[2025-11-27 19:47:12] -rw------- 1 boinc boinc      4835 Nov 27 19:46 pilotlog.txt
[2025-11-27 19:47:12] -rw------- 1 boinc boinc   7776223 Nov 27 19:46 log.47523449._006609.job.log.1
[2025-11-27 19:47:12] -rw------- 1 boinc boinc       353 Nov 27 19:46 output.list
[2025-11-27 19:47:12] -rw-r--r-- 1 boinc boinc       620 Nov 27 19:46 runtime_log
[2025-11-27 19:47:12] -rw------- 1 boinc boinc   9472000 Nov 27 19:46 result.tar.gz
[2025-11-27 19:47:12] -rw------- 1 boinc boinc       670 Nov 27 19:46 zKgNDm8ILg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmiAIKDmFNIwsm.diag
[2025-11-27 19:47:12] -rw-r--r-- 1 boinc boinc      9223 Nov 27 19:46 runtime_log.err
[2025-11-27 19:47:12] -rw-r--r-- 1 boinc boinc        28 Nov 27 19:47 wrapper_checkpoint.txt
[2025-11-27 19:47:12] -rw-r--r-- 1 boinc boinc      8192 Nov 27 19:47 boinc_mmap_file
[2025-11-27 19:47:12] -rw-r--r-- 1 boinc boinc     21209 Nov 27 19:47 stderr.txt
[2025-11-27 19:47:12] HITS file was successfully produced:
[2025-11-27 19:47:12] -rw------- 1 boinc boinc 916460099 Nov 27 19:45 shared/HITS.pool.root.1
[2025-11-27 19:47:12]  *** Contents of shared directory: ***
[2025-11-27 19:47:12] total 1303184
[2025-11-27 19:47:12] -rw-r--r-- 2 boinc boinc 407902014 Nov 27 04:06 ATLAS.root_0
[2025-11-27 19:47:12] -rw-r--r-- 2 boinc boinc     15847 Nov 27 04:06 start_atlas.sh
[2025-11-27 19:47:12] -rw-r--r-- 2 boinc boinc    590095 Nov 27 04:06 input.tar.gz
[2025-11-27 19:47:12] -rw------- 1 boinc boinc 916460099 Nov 27 19:45 HITS.pool.root.1
[2025-11-27 19:47:12] -rw------- 1 boinc boinc   9472000 Nov 27 19:46 result.tar.gz
19:47:13 (2330814): run_atlas exited; CPU time 229763.490289
19:47:13 (2330814): called boinc_finish(0)

</stderr_txt>
]]>

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