Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:35:44 (1223957): wrapper (7.7.26015): starting
04:35:44 (1223957): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 04:35:44] Arguments: --nthreads 4
[2025-11-21 04:35:44] Threads: 4
[2025-11-21 04:35:44] Checking for CVMFS
[2025-11-21 04:35:44] No cvmfs_config command found, will try listing directly
[2025-11-21 04:35:44] CVMFS is ok
[2025-11-21 04:35:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 04:35:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 04:35:44] Further information can be found at the LHC@home message board.
[2025-11-21 04:35:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 04:35:44] Checking for apptainer binary...
[2025-11-21 04:35:44] which: no apptainer in ((null))
[2025-11-21 04:35:44] apptainer is not installed, using version from CVMFS
[2025-11-21 04:35:44] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 04:35:44] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot124/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2025-11-21 04:35:44] apptainer works
[2025-11-21 04:35:44] Set ATHENA_PROC_NUMBER=4
[2025-11-21 04:35:44] Set ATHENA_CORE_NUMBER=4
[2025-11-21 04:35:44] Starting ATLAS job with PandaID=6893852426
[2025-11-21 04:35:44] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot124/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 20:55:52]  *** The last 200 lines of the pilot log: ***
[2025-11-21 20:55:52] 2025-11-21 19:51:55,000 | INFO     | time since job start (58554s) is within the limit (172800.0s)
[2025-11-21 20:55:52] 2025-11-21 19:51:55,014 | INFO     | number of running child processes to parent process 1235713: 1
[2025-11-21 20:55:52] 2025-11-21 19:51:55,015 | INFO     | maximum number of monitored processes: 12
[2025-11-21 20:55:52] 2025-11-21 19:51:55,869 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 20:55:52] 2025-11-21 19:51:55,890 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2713.2621171875003
[2025-11-21 20:55:52] 2025-11-21 19:51:55,915 | INFO     | using path: /scratch/boinc/var/slot124/slots/0/PanDA_Pilot-6893852426/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 20:55:52] 2025-11-21 19:51:55,915 | INFO     | extracted standard info from prmon json
[2025-11-21 20:55:52] 2025-11-21 19:51:55,916 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 20:55:52] 2025-11-21 19:51:55,916 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 20:55:52] 2025-11-21 19:51:55,931 | INFO     | fitting pss+swap vs Time
[2025-11-21 20:55:52] 2025-11-21 19:51:55,933 | INFO     | sum of square deviations: 274341469249.76562
[2025-11-21 20:55:52] 2025-11-21 19:51:55,955 | INFO     | sum of deviations: 536424593389.03076
[2025-11-21 20:55:52] 2025-11-21 19:51:55,956 | INFO     | mean x: 1763725446.515625
[2025-11-21 20:55:52] 2025-11-21 19:51:55,956 | INFO     | mean y: 2279265.33125
[2025-11-21 20:55:52] 2025-11-21 19:51:55,956 | INFO     | intersect: -3446363435.622132
[2025-11-21 20:55:52] 2025-11-21 19:51:55,957 | INFO     | chi2: 4.421496214353269
[2025-11-21 20:55:52] 2025-11-21 19:51:55,959 | INFO     | sum of square deviations: 270077170614.76447
[2025-11-21 20:55:52] 2025-11-21 19:51:55,982 | INFO     | sum of deviations: 750015963156.5858
[2025-11-21 20:55:52] 2025-11-21 19:51:55,982 | INFO     | mean x: 1763725294.0157068
[2025-11-21 20:55:52] 2025-11-21 19:51:55,982 | INFO     | mean y: 2286898.294240838
[2025-11-21 20:55:52] 2025-11-21 19:51:55,982 | INFO     | intersect: -4895654390.574205
[2025-11-21 20:55:52] 2025-11-21 19:51:55,984 | INFO     | chi2: 2.0214379194513663
[2025-11-21 20:55:52] 2025-11-21 19:51:55,984 | INFO     | current chi2=2.0214379194513663 (change=54.2815865613708 %)
[2025-11-21 20:55:52] 2025-11-21 19:51:55,985 | INFO     | sum of square deviations: 265857291417.26276
[2025-11-21 20:55:52] 2025-11-21 19:51:56,007 | INFO     | sum of deviations: 754609653873.8635
[2025-11-21 20:55:52] 2025-11-21 19:51:56,008 | INFO     | mean x: 1763725141.5157895
[2025-11-21 20:55:52] 2025-11-21 19:51:56,008 | INFO     | mean y: 2287062.1757894736
[2025-11-21 20:55:52] 2025-11-21 19:51:56,008 | INFO     | intersect: -5003872488.584761
[2025-11-21 20:55:52] 2025-11-21 19:51:56,009 | INFO     | chi2: 1.9901113453112846
[2025-11-21 20:55:52] 2025-11-21 19:51:56,009 | INFO     | current chi2=1.9901113453112846 (change=1.5497173491523268 %)
[2025-11-21 20:55:52] 2025-11-21 19:51:56,009 | INFO     | right removable region: 949
[2025-11-21 20:55:52] 2025-11-21 19:51:56,010 | INFO     | sum of square deviations: 270077161464.76437
[2025-11-21 20:55:52] 2025-11-21 19:51:56,033 | INFO     | sum of deviations: 362255375275.69183
[2025-11-21 20:55:52] 2025-11-21 19:51:56,033 | INFO     | mean x: 1763725599.0157068
[2025-11-21 20:55:52] 2025-11-21 19:51:56,033 | INFO     | mean y: 2285482.5539267017
[2025-11-21 20:55:52] 2025-11-21 19:51:56,033 | INFO     | intersect: -2363405401.079475
[2025-11-21 20:55:52] 2025-11-21 19:51:56,035 | INFO     | chi2: 2.5530541529960287
[2025-11-21 20:55:52] 2025-11-21 19:51:56,035 | INFO     | current chi2=2.5530541529960287 (change=42.258140022642465 %)
[2025-11-21 20:55:52] 2025-11-21 19:51:56,036 | INFO     | sum of square deviations: 265857273117.26273
[2025-11-21 20:55:52] 2025-11-21 19:51:56,059 | INFO     | sum of deviations: 351771613627.6951
[2025-11-21 20:55:52] 2025-11-21 19:51:56,059 | INFO     | mean x: 1763725751.5157895
[2025-11-21 20:55:52] 2025-11-21 19:51:56,059 | INFO     | mean y: 2285860.9536842103
[2025-11-21 20:55:52] 2025-11-21 19:51:56,059 | INFO     | intersect: -2331404868.4091105
[2025-11-21 20:55:52] 2025-11-21 19:51:56,060 | INFO     | chi2: 2.551737315633122
[2025-11-21 20:55:52] 2025-11-21 19:51:56,060 | INFO     | current chi2=2.551737315633122 (change=0.051578904480398334 %)
[2025-11-21 20:55:52] 2025-11-21 19:51:56,060 | INFO     | left removable region: 20
[2025-11-21 20:55:52] 2025-11-21 19:51:56,061 | INFO     | sum of square deviations: 248613573974.75772
[2025-11-21 20:55:52] 2025-11-21 19:51:56,083 | INFO     | sum of deviations: 562240562164.4319
[2025-11-21 20:55:52] 2025-11-21 19:51:56,083 | INFO     | mean x: 1763725721.0161464
[2025-11-21 20:55:52] 2025-11-21 19:51:56,083 | INFO     | mean y: 2293930.2378902044
[2025-11-21 20:55:52] 2025-11-21 19:51:56,083 | INFO     | intersect: -3986378631.09486
[2025-11-21 20:55:52] 2025-11-21 19:51:56,084 | INFO     | chi2: 0.10116230791978577
[2025-11-21 20:55:52] 2025-11-21 19:51:56,084 | INFO     | current memory leak: 2.26 B/s (using 929 data points, chi2=0.10)
[2025-11-21 20:55:52] 2025-11-21 19:51:56,086 | INFO     | could have reported an average CPU frequency of 2693 MHz (36 samples)
[2025-11-21 20:55:52] 2025-11-21 19:51:56,087 | INFO     | ..............................
[2025-11-21 20:55:52] 2025-11-21 19:51:56,087 | INFO     | . Timing measurements:
[2025-11-21 20:55:52] 2025-11-21 19:51:56,087 | INFO     | . get job = 0 s
[2025-11-21 20:55:52] 2025-11-21 19:51:56,087 | INFO     | . initial setup = 1 s
[2025-11-21 20:55:52] 2025-11-21 19:51:56,087 | INFO     | . payload setup = 9 s
[2025-11-21 20:55:52] 2025-11-21 19:51:56,087 | INFO     | . stage-in = 0 s
[2025-11-21 20:55:52] 2025-11-21 19:51:56,087 | INFO     | . payload execution = 58512 s
[2025-11-21 20:55:52] 2025-11-21 19:51:56,087 | INFO     | . stage-out = 2 s
[2025-11-21 20:55:52] 2025-11-21 19:51:56,087 | INFO     | . log creation = 0 s
[2025-11-21 20:55:52] 2025-11-21 19:51:56,087 | INFO     | ..............................
[2025-11-21 20:55:52] 2025-11-21 19:51:56,536 | INFO     | 
[2025-11-21 20:55:52] 2025-11-21 19:51:56,536 | INFO     | job summary report
[2025-11-21 20:55:52] 2025-11-21 19:51:56,536 | INFO     | --------------------------------------------------
[2025-11-21 20:55:52] 2025-11-21 19:51:56,537 | INFO     | PanDA job id: 6893852426
[2025-11-21 20:55:52] 2025-11-21 19:51:56,537 | INFO     | task id: 47523449
[2025-11-21 20:55:52] 2025-11-21 19:51:56,537 | INFO     | errors: (none)
[2025-11-21 20:55:52] 2025-11-21 19:51:56,537 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 20:55:52] 2025-11-21 19:51:56,537 | INFO     | pilot state: finished 
[2025-11-21 20:55:52] 2025-11-21 19:51:56,537 | INFO     | transexitcode: 0
[2025-11-21 20:55:52] 2025-11-21 19:51:56,537 | INFO     | exeerrorcode: 0
[2025-11-21 20:55:52] 2025-11-21 19:51:56,537 | INFO     | exeerrordiag: 
[2025-11-21 20:55:52] 2025-11-21 19:51:56,537 | INFO     | exitcode: 0
[2025-11-21 20:55:52] 2025-11-21 19:51:56,537 | INFO     | exitmsg: OK
[2025-11-21 20:55:52] 2025-11-21 19:51:56,537 | INFO     | cpuconsumptiontime: 234153 s
[2025-11-21 20:55:52] 2025-11-21 19:51:56,538 | INFO     | nevents: 1000
[2025-11-21 20:55:52] 2025-11-21 19:51:56,538 | INFO     | neventsw: 0
[2025-11-21 20:55:52] 2025-11-21 19:51:56,538 | INFO     | pid: 1235713
[2025-11-21 20:55:52] 2025-11-21 19:51:56,538 | INFO     | pgrp: 1235713
[2025-11-21 20:55:52] 2025-11-21 19:51:56,538 | INFO     | corecount: 4
[2025-11-21 20:55:52] 2025-11-21 19:51:56,538 | INFO     | event service: False
[2025-11-21 20:55:52] 2025-11-21 19:51:56,538 | INFO     | sizes: {0: 2297979, 1: 2298847, 8: 2299109, 12: 2299137, 58526: 2353729, 58528: 2362747, 58529: 2362931, 58536: 2363177}
[2025-11-21 20:55:52] 2025-11-21 19:51:56,538 | INFO     | --------------------------------------------------
[2025-11-21 20:55:52] 2025-11-21 19:51:56,538 | INFO     | 
[2025-11-21 20:55:52] 2025-11-21 19:51:56,538 | INFO     | executing command: ls -lF /scratch/boinc/var/slot124/slots/0
[2025-11-21 20:55:52] 2025-11-21 19:51:56,567 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 20:55:52] 2025-11-21 19:51:56,568 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 20:55:52] 2025-11-21 19:51:56,568 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 20:55:52] 2025-11-21 19:51:56,568 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 20:55:52] 2025-11-21 19:51:56,568 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 20:55:52] 2025-11-21 19:51:56,568 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 20:55:52] 2025-11-21 19:51:56,568 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 20:55:52] 2025-11-21 19:51:56,568 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 20:55:52] 2025-11-21 19:51:56,568 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 20:55:52] 2025-11-21 19:51:56,568 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 20:55:52] 2025-11-21 19:51:56,569 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 20:55:52] 2025-11-21 19:51:56,569 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 20:55:52] 2025-11-21 19:51:56,569 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 20:55:52] 2025-11-21 19:51:56,569 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 20:55:52] 2025-11-21 19:51:56,569 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 20:55:52] 2025-11-21 19:51:56,569 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 20:55:52] 2025-11-21 19:51:56,569 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 20:55:52] 2025-11-21 19:51:56,569 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 20:55:52] 2025-11-21 19:51:56,569 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 20:55:52] 2025-11-21 19:51:56,569 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 20:55:52] 2025-11-21 19:51:56,569 | INFO     | job 6893852426 has completed (purged errors)
[2025-11-21 20:55:52] 2025-11-21 19:51:56,570 | INFO     | overall cleanup function is called
[2025-11-21 20:55:52] 2025-11-21 19:51:57,586 | INFO     | --- collectZombieJob: --- 10, [1235713]
[2025-11-21 20:55:52] 2025-11-21 19:51:57,586 | INFO     | zombie collector waiting for pid 1235713
[2025-11-21 20:55:52] 2025-11-21 19:51:57,586 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 20:55:52] 2025-11-21 19:51:57,586 | INFO     | collected zombie processes
[2025-11-21 20:55:52] 2025-11-21 19:51:57,586 | INFO     | will attempt to kill all subprocesses of pid=1235713
[2025-11-21 20:55:52] 2025-11-21 19:51:58,391 | INFO     | process IDs to be killed: [1235713] (in reverse order)
[2025-11-21 20:55:52] 2025-11-21 19:51:58,662 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 20:55:52] 2025-11-21 19:51:58,663 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 20:55:52] 2025-11-21 19:51:58,695 | INFO     | did not find any defunct processes belonging to 1235713
[2025-11-21 20:55:52] 2025-11-21 19:51:58,725 | INFO     | did not find any defunct processes belonging to 1235713
[2025-11-21 20:55:52] 2025-11-21 19:51:58,727 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 20:55:52] 2025-11-21 19:51:58,727 | INFO     | ready for new job
[2025-11-21 20:55:52] 2025-11-21 19:51:58,727 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 20:55:52] 2025-11-21 19:51:58,733 | INFO     | ***************************************
[2025-11-21 20:55:52] 2025-11-21 19:51:58,733 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 20:55:52] 2025-11-21 19:51:58,733 | INFO     | ***************************************
[2025-11-21 20:55:52] 2025-11-21 19:51:58,733 | INFO     | 
[2025-11-21 20:55:52] 2025-11-21 19:51:58,741 | INFO     | architecture information:
[2025-11-21 20:55:52] 2025-11-21 19:51:58,742 | INFO     | executing command: cat /etc/os-release
[2025-11-21 20:55:52] 2025-11-21 19:51:58,767 | INFO     | cat /etc/os-release:
[2025-11-21 20:55:52] NAME="CentOS Linux"
[2025-11-21 20:55:52] VERSION="7 (Core)"
[2025-11-21 20:55:52] ID="centos"
[2025-11-21 20:55:52] ID_LIKE="rhel fedora"
[2025-11-21 20:55:52] VERSION_ID="7"
[2025-11-21 20:55:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 20:55:52] ANSI_COLOR="0;31"
[2025-11-21 20:55:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 20:55:52] HOME_URL="https://www.centos.org/"
[2025-11-21 20:55:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 20:55:52] 
[2025-11-21 20:55:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 20:55:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 20:55:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 20:55:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 20:55:52] 
[2025-11-21 20:55:52] 2025-11-21 19:51:58,767 | INFO     | ***************************************
[2025-11-21 20:55:52] 2025-11-21 19:51:59,270 | INFO     | executing command: df -mP /scratch/boinc/var/slot124/slots/0
[2025-11-21 20:55:52] 2025-11-21 19:51:59,295 | INFO     | sufficient remaining disk space (3307346067456 B)
[2025-11-21 20:55:52] 2025-11-21 19:51:59,296 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 20:55:52] 2025-11-21 19:51:59,296 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 20:55:52] 2025-11-21 19:51:59,296 | INFO     | update_server=False
[2025-11-21 20:55:52] 2025-11-21 19:51:59,296 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 20:55:52] 2025-11-21 19:51:59,296 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 20:55:52] 2025-11-21 19:51:59,296 | INFO     | aborting loop
[2025-11-21 20:55:52] 2025-11-21 19:51:59,297 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 20:55:52] 2025-11-21 19:51:59,298 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 20:55:52] 2025-11-21 19:51:59,429 | INFO     | all data control threads have been joined
[2025-11-21 20:55:52] 2025-11-21 19:51:59,946 | INFO     | all payload control threads have been joined
[2025-11-21 20:55:52] 2025-11-21 19:52:00,301 | INFO     | [job] retrieve thread has finished
[2025-11-21 20:55:52] 2025-11-21 19:52:00,302 | INFO     | [job] job monitor thread has finished
[2025-11-21 20:55:52] 2025-11-21 19:52:00,434 | INFO     | [data] control thread has finished
[2025-11-21 20:55:52] 2025-11-21 19:52:00,642 | INFO     | all job control threads have been joined
[2025-11-21 20:55:52] 2025-11-21 19:52:00,692 | INFO     | [job] validate thread has finished
[2025-11-21 20:55:52] 2025-11-21 19:52:00,836 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 20:55:52] 2025-11-21 19:52:00,951 | INFO     | [payload] control thread has finished
[2025-11-21 20:55:52] 2025-11-21 19:52:01,196 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 20:55:52] 2025-11-21 19:52:01,274 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 20:55:52] 2025-11-21 19:52:01,293 | INFO     | [payload] validate_post thread has finished
[2025-11-21 20:55:52] 2025-11-21 19:52:01,304 | INFO     | [data] copytool_out thread has finished
[2025-11-21 20:55:52] 2025-11-21 19:52:01,357 | INFO     | [payload] failed_post thread has finished
[2025-11-21 20:55:52] 2025-11-21 19:52:01,400 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 20:55:52] 2025-11-21 19:52:01,430 | INFO     | [data] copytool_in thread has finished
[2025-11-21 20:55:52] 2025-11-21 19:52:01,649 | INFO     | [job] control thread has finished
[2025-11-21 20:55:52] 2025-11-21 19:52:01,801 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 20:55:52] 2025-11-21 19:52:02,201 | INFO     | [job] queue monitor thread has finished
[2025-11-21 20:55:52] 2025-11-21 19:52:03,303 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 20:55:52] 2025-11-21 19:52:29,188 | INFO     | PID=1228208 has CPU usage=13.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-21 20:55:52] 2025-11-21 19:52:29,188 | INFO     | .. there are 7 such processes running
[2025-11-21 20:55:52] 2025-11-21 19:52:29,188 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 20:55:52] 2025-11-21 19:52:29,189 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 20:55:52] 2025-11-21 19:52:29,189 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 20:55:52] 2025-11-21 19:52:38,348 | INFO     | [monitor] cgroup control has ended
[2025-11-21 20:55:52] 2025-11-21 19:52:39,204 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23234044479296)>', '<ExcThread(monitor, started 23233801705216)>']
[2025-11-21 20:55:52] 2025-11-21 19:52:39,242 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 20:55:52] 2025-11-21 19:52:39,243 | INFO     | [monitor] control thread has ended
[2025-11-21 20:55:52] 2025-11-21 19:52:44,229 | INFO     | all workflow threads have been joined
[2025-11-21 20:55:52] 2025-11-21 19:52:44,230 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 20:55:52] 2025-11-21 19:52:44,230 | INFO     | traces error code: 0
[2025-11-21 20:55:52] 2025-11-21 19:52:44,230 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 20:55:52] 2025-11-21 19:52:44,404 [wrapper] ==== pilot stdout END ====
[2025-11-21 20:55:52] 2025-11-21 19:52:44,408 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 20:55:52] 2025-11-21 19:52:44,415 [wrapper] pilotpid: 1228208
[2025-11-21 20:55:52] 2025-11-21 19:52:44,419 [wrapper] Pilot exit status: 0
[2025-11-21 20:55:52] 2025-11-21 19:52:44,434 [wrapper] pandaids: 6893852426
[2025-11-21 20:55:52] 2025-11-21 19:52:44,628 [wrapper] cleanup supervisor_pilot 2914826 1228209
[2025-11-21 20:55:52] 2025-11-21 19:52:44,632 [wrapper] Test setup, not cleaning
[2025-11-21 20:55:52] 2025-11-21 19:52:44,636 [wrapper] apfmon messages muted
[2025-11-21 20:55:52] 2025-11-21 19:52:44,640 [wrapper] ==== wrapper stdout END ====
[2025-11-21 20:55:52] 2025-11-21 19:52:44,644 [wrapper] ==== wrapper stderr END ====
[2025-11-21 20:55:52]  *** Error codes and diagnostics ***
[2025-11-21 20:55:52]     "exeErrorCode": 0,
[2025-11-21 20:55:52]     "exeErrorDiag": "",
[2025-11-21 20:55:52]     "pilotErrorCode": 0,
[2025-11-21 20:55:52]     "pilotErrorDiag": "",
[2025-11-21 20:55:52]  *** Listing of results directory ***
[2025-11-21 20:55:52] total 1316904
[2025-11-21 20:55:52] -rw-r--r-- 1 boinc boinc    576529 Nov 20 12:54 pilot3.tar.gz
[2025-11-21 20:55:52] -rw-r--r-- 1 boinc boinc      5112 Nov 20 12:56 queuedata.json
[2025-11-21 20:55:52] -rwx------ 1 boinc boinc     36292 Nov 20 12:56 runpilot2-wrapper.sh
[2025-11-21 20:55:52] -rw-r--r-- 1 boinc boinc       100 Nov 21 02:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 20:55:52] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 02:55 run_atlas
[2025-11-21 20:55:52] -rw-r--r-- 1 boinc boinc       105 Nov 21 02:55 job.xml
[2025-11-21 20:55:52] -rw-r--r-- 1 boinc boinc      6687 Nov 21 04:35 init_data.xml
[2025-11-21 20:55:52] -rw-r--r-- 2 boinc boinc 408632928 Nov 21 04:35 EVNT.47493127._000381.pool.root.1
[2025-11-21 20:55:52] -rw-r--r-- 2 boinc boinc     15847 Nov 21 04:35 start_atlas.sh
[2025-11-21 20:55:52] drwxrwx--x 2 boinc boinc      4096 Nov 21 04:35 shared
[2025-11-21 20:55:52] -rw-r--r-- 2 boinc boinc    590101 Nov 21 04:35 input.tar.gz
[2025-11-21 20:55:52] -rw-r--r-- 1 boinc boinc         0 Nov 21 04:35 boinc_lockfile
[2025-11-21 20:55:52] -rw-r--r-- 1 boinc boinc      2786 Nov 21 04:35 pandaJob.out
[2025-11-21 20:55:52] -rw------- 1 boinc boinc    989817 Nov 21 04:35 agis_schedconf.cvmfs.json
[2025-11-21 20:55:52] drwx------ 5 boinc boinc      4096 Nov 21 04:36 pilot3
[2025-11-21 20:55:52] -rw-r--r-- 1 boinc boinc       532 Nov 21 20:45 boinc_task_state.xml
[2025-11-21 20:55:52] -rw------- 1 boinc boinc 916515126 Nov 21 20:51 HITS.47523449._003806.pool.root.1
[2025-11-21 20:55:52] -rw------- 1 boinc boinc      1039 Nov 21 20:51 memory_monitor_summary.json
[2025-11-21 20:55:52] -rw------- 1 boinc boinc   1526164 Nov 21 20:51 agis_ddmendpoints.agis.ALL.json
[2025-11-21 20:55:52] -rw------- 1 boinc boinc   1702707 Nov 21 20:51 log.47523449._003806.job.log.tgz.1
[2025-11-21 20:55:52] -rw------- 1 boinc boinc        95 Nov 21 20:51 pilot_heartbeat.json
[2025-11-21 20:55:52] -rw------- 1 boinc boinc      8608 Nov 21 20:51 heartbeat.json
[2025-11-21 20:55:52] -rw------- 1 boinc boinc      4836 Nov 21 20:52 pilotlog.txt
[2025-11-21 20:55:52] -rw------- 1 boinc boinc   8019305 Nov 21 20:52 log.47523449._003806.job.log.1
[2025-11-21 20:55:52] -rw------- 1 boinc boinc       353 Nov 21 20:52 output.list
[2025-11-21 20:55:52] -rw-r--r-- 1 boinc boinc       620 Nov 21 20:52 runtime_log
[2025-11-21 20:55:52] -rw------- 1 boinc boinc   9738240 Nov 21 20:52 result.tar.gz
[2025-11-21 20:55:52] -rw-r--r-- 1 boinc boinc      9223 Nov 21 20:52 runtime_log.err
[2025-11-21 20:55:52] -rw------- 1 boinc boinc       671 Nov 21 20:52 6beKDmgSIg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmsaGKDm6s8b3n.diag
[2025-11-21 20:55:52] -rw-r--r-- 1 boinc boinc        28 Nov 21 20:55 wrapper_checkpoint.txt
[2025-11-21 20:55:52] -rw-r--r-- 1 boinc boinc      8192 Nov 21 20:55 boinc_mmap_file
[2025-11-21 20:55:52] -rw-r--r-- 1 boinc boinc     21097 Nov 21 20:55 stderr.txt
[2025-11-21 20:55:52] HITS file was successfully produced:
[2025-11-21 20:55:52] -rw------- 1 boinc boinc 916515126 Nov 21 20:51 shared/HITS.pool.root.1
[2025-11-21 20:55:52]  *** Contents of shared directory: ***
[2025-11-21 20:55:52] total 1304208
[2025-11-21 20:55:52] -rw-r--r-- 2 boinc boinc 408632928 Nov 21 04:35 ATLAS.root_0
[2025-11-21 20:55:52] -rw-r--r-- 2 boinc boinc     15847 Nov 21 04:35 start_atlas.sh
[2025-11-21 20:55:52] -rw-r--r-- 2 boinc boinc    590101 Nov 21 04:35 input.tar.gz
[2025-11-21 20:55:52] -rw------- 1 boinc boinc 916515126 Nov 21 20:51 HITS.pool.root.1
[2025-11-21 20:55:52] -rw------- 1 boinc boinc   9738240 Nov 21 20:52 result.tar.gz
20:55:53 (1223957): run_atlas exited; CPU time 237097.344425
20:55:53 (1223957): called boinc_finish(0)

</stderr_txt>
]]>

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