Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:40:27 (1918363): wrapper (7.7.26015): starting
05:40:27 (1918363): wrapper: running run_atlas (--nthreads 4)
[2025-11-25 05:40:27] Arguments: --nthreads 4
[2025-11-25 05:40:27] Threads: 4
[2025-11-25 05:40:27] Checking for CVMFS
[2025-11-25 05:40:27] No cvmfs_config command found, will try listing directly
[2025-11-25 05:40:27] CVMFS is ok
[2025-11-25 05:40:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 05:40:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 05:40:27] Further information can be found at the LHC@home message board.
[2025-11-25 05:40:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 05:40:27] Checking for apptainer binary...
[2025-11-25 05:40:27] which: no apptainer in ((null))
[2025-11-25 05:40:27] apptainer is not installed, using version from CVMFS
[2025-11-25 05:40:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 05:40:27] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot112/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2025-11-25 05:40:27] apptainer works
[2025-11-25 05:40:27] Set ATHENA_PROC_NUMBER=4
[2025-11-25 05:40:27] Set ATHENA_CORE_NUMBER=4
[2025-11-25 05:40:27] Starting ATLAS job with PandaID=6893871893
[2025-11-25 05:40:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot112/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 21:23:29]  *** The last 200 lines of the pilot log: ***
[2025-11-25 21:23:29] 2025-11-25 20:22:20,342 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:23:29] 2025-11-25 20:22:21,408 | INFO     | time since job start (56499s) is within the limit (172800.0s)
[2025-11-25 21:23:29] 2025-11-25 20:22:21,467 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 21:23:29] 2025-11-25 20:22:21,489 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2675.8022265625
[2025-11-25 21:23:29] 2025-11-25 20:22:21,513 | INFO     | using path: /scratch/boinc/var/slot112/slots/0/PanDA_Pilot-6893871893/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 21:23:29] 2025-11-25 20:22:21,514 | INFO     | extracted standard info from prmon json
[2025-11-25 21:23:29] 2025-11-25 20:22:21,514 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 21:23:29] 2025-11-25 20:22:21,514 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 21:23:29] 2025-11-25 20:22:21,529 | INFO     | fitting pss+swap vs Time
[2025-11-25 21:23:29] 2025-11-25 20:22:21,530 | INFO     | sum of square deviations: 246212941987.5
[2025-11-25 21:23:29] 2025-11-25 20:22:21,551 | INFO     | sum of deviations: 640325469789.0
[2025-11-25 21:23:29] 2025-11-25 20:22:21,551 | INFO     | mean x: 1764073891.5
[2025-11-25 21:23:29] 2025-11-25 20:22:21,552 | INFO     | mean y: 2279095.9546436286
[2025-11-25 21:23:29] 2025-11-25 20:22:21,552 | INFO     | intersect: -4585544087.501711
[2025-11-25 21:23:29] 2025-11-25 20:22:21,553 | INFO     | chi2: 4.074954482916665
[2025-11-25 21:23:29] 2025-11-25 20:22:21,554 | INFO     | sum of square deviations: 242246104820.0
[2025-11-25 21:23:29] 2025-11-25 20:22:21,574 | INFO     | sum of deviations: 830948595320.0006
[2025-11-25 21:23:29] 2025-11-25 20:22:21,574 | INFO     | mean x: 1764073739.0
[2025-11-25 21:23:29] 2025-11-25 20:22:21,574 | INFO     | mean y: 2286416.7589576547
[2025-11-25 21:23:29] 2025-11-25 20:22:21,574 | INFO     | intersect: -6048810241.955735
[2025-11-25 21:23:29] 2025-11-25 20:22:21,575 | INFO     | chi2: 1.9261265029548613
[2025-11-25 21:23:29] 2025-11-25 20:22:21,575 | INFO     | current chi2=1.9261265029548613 (change=52.73256398250052 %)
[2025-11-25 21:23:29] 2025-11-25 20:22:21,577 | INFO     | sum of square deviations: 238322105665.0
[2025-11-25 21:23:29] 2025-11-25 20:22:21,595 | INFO     | sum of deviations: 819848618049.4998
[2025-11-25 21:23:29] 2025-11-25 20:22:21,596 | INFO     | mean x: 1764073586.5
[2025-11-25 21:23:29] 2025-11-25 20:22:21,596 | INFO     | mean y: 2285984.6255458514
[2025-11-25 21:23:29] 2025-11-25 20:22:21,596 | INFO     | intersect: -6066279446.9950485
[2025-11-25 21:23:29] 2025-11-25 20:22:21,597 | INFO     | chi2: 1.9228302403188269
[2025-11-25 21:23:29] 2025-11-25 20:22:21,597 | INFO     | current chi2=1.9228302403188269 (change=0.17113427549943688 %)
[2025-11-25 21:23:29] 2025-11-25 20:22:21,597 | INFO     | right removable region: 915
[2025-11-25 21:23:29] 2025-11-25 20:22:21,598 | INFO     | sum of square deviations: 242246104820.0
[2025-11-25 21:23:29] 2025-11-25 20:22:21,617 | INFO     | sum of deviations: 474164298603.0004
[2025-11-25 21:23:29] 2025-11-25 20:22:21,617 | INFO     | mean x: 1764074044.0
[2025-11-25 21:23:29] 2025-11-25 20:22:21,617 | INFO     | mean y: 2285471.5841476656
[2025-11-25 21:23:29] 2025-11-25 20:22:21,617 | INFO     | intersect: -3450653152.046344
[2025-11-25 21:23:29] 2025-11-25 20:22:21,618 | INFO     | chi2: 2.2493915503038266
[2025-11-25 21:23:29] 2025-11-25 20:22:21,618 | INFO     | current chi2=2.2493915503038266 (change=44.799590774966994 %)
[2025-11-25 21:23:29] 2025-11-25 20:22:21,619 | INFO     | sum of square deviations: 238322105665.0
[2025-11-25 21:23:29] 2025-11-25 20:22:21,638 | INFO     | sum of deviations: 462525817053.50006
[2025-11-25 21:23:29] 2025-11-25 20:22:21,638 | INFO     | mean x: 1764074196.5
[2025-11-25 21:23:29] 2025-11-25 20:22:21,638 | INFO     | mean y: 2285923.2980349343
[2025-11-25 21:23:29] 2025-11-25 20:22:21,638 | INFO     | intersect: -3421357287.6514335
[2025-11-25 21:23:29] 2025-11-25 20:22:21,639 | INFO     | chi2: 2.247826209076235
[2025-11-25 21:23:29] 2025-11-25 20:22:21,639 | INFO     | current chi2=2.247826209076235 (change=0.06958953977489357 %)
[2025-11-25 21:23:29] 2025-11-25 20:22:21,639 | INFO     | left removable region: 20
[2025-11-25 21:23:29] 2025-11-25 20:22:21,640 | INFO     | sum of square deviations: 222303851840.0
[2025-11-25 21:23:29] 2025-11-25 20:22:21,658 | INFO     | sum of deviations: 635626420799.0
[2025-11-25 21:23:29] 2025-11-25 20:22:21,658 | INFO     | mean x: 1764074166.0
[2025-11-25 21:23:29] 2025-11-25 20:22:21,659 | INFO     | mean y: 2292986.5653631287
[2025-11-25 21:23:29] 2025-11-25 20:22:21,659 | INFO     | intersect: -5041668865.096995
[2025-11-25 21:23:29] 2025-11-25 20:22:21,660 | INFO     | chi2: 0.07355640902532849
[2025-11-25 21:23:29] 2025-11-25 20:22:21,660 | INFO     | current memory leak: 2.86 B/s (using 895 data points, chi2=0.07)
[2025-11-25 21:23:29] 2025-11-25 20:22:21,661 | INFO     | could have reported an average CPU frequency of 2686 MHz (35 samples)
[2025-11-25 21:23:29] 2025-11-25 20:22:21,661 | INFO     | ..............................
[2025-11-25 21:23:29] 2025-11-25 20:22:21,661 | INFO     | . Timing measurements:
[2025-11-25 21:23:29] 2025-11-25 20:22:21,661 | INFO     | . get job = 0 s
[2025-11-25 21:23:29] 2025-11-25 20:22:21,661 | INFO     | . initial setup = 1 s
[2025-11-25 21:23:29] 2025-11-25 20:22:21,661 | INFO     | . payload setup = 9 s
[2025-11-25 21:23:29] 2025-11-25 20:22:21,661 | INFO     | . stage-in = 0 s
[2025-11-25 21:23:29] 2025-11-25 20:22:21,661 | INFO     | . payload execution = 56453 s
[2025-11-25 21:23:29] 2025-11-25 20:22:21,661 | INFO     | . stage-out = 2 s
[2025-11-25 21:23:29] 2025-11-25 20:22:21,662 | INFO     | . log creation = 0 s
[2025-11-25 21:23:29] 2025-11-25 20:22:21,662 | INFO     | ..............................
[2025-11-25 21:23:29] 2025-11-25 20:22:22,073 | INFO     | 
[2025-11-25 21:23:29] 2025-11-25 20:22:22,073 | INFO     | job summary report
[2025-11-25 21:23:29] 2025-11-25 20:22:22,073 | INFO     | --------------------------------------------------
[2025-11-25 21:23:29] 2025-11-25 20:22:22,073 | INFO     | PanDA job id: 6893871893
[2025-11-25 21:23:29] 2025-11-25 20:22:22,073 | INFO     | task id: 47523449
[2025-11-25 21:23:29] 2025-11-25 20:22:22,073 | INFO     | errors: (none)
[2025-11-25 21:23:29] 2025-11-25 20:22:22,073 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 21:23:29] 2025-11-25 20:22:22,074 | INFO     | pilot state: finished 
[2025-11-25 21:23:29] 2025-11-25 20:22:22,074 | INFO     | transexitcode: 0
[2025-11-25 21:23:29] 2025-11-25 20:22:22,074 | INFO     | exeerrorcode: 0
[2025-11-25 21:23:29] 2025-11-25 20:22:22,074 | INFO     | exeerrordiag: 
[2025-11-25 21:23:29] 2025-11-25 20:22:22,074 | INFO     | exitcode: 0
[2025-11-25 21:23:29] 2025-11-25 20:22:22,074 | INFO     | exitmsg: OK
[2025-11-25 21:23:29] 2025-11-25 20:22:22,074 | INFO     | cpuconsumptiontime: 224069 s
[2025-11-25 21:23:29] 2025-11-25 20:22:22,074 | INFO     | nevents: 1000
[2025-11-25 21:23:29] 2025-11-25 20:22:22,074 | INFO     | neventsw: 0
[2025-11-25 21:23:29] 2025-11-25 20:22:22,074 | INFO     | pid: 1930140
[2025-11-25 21:23:29] 2025-11-25 20:22:22,074 | INFO     | pgrp: 1930140
[2025-11-25 21:23:29] 2025-11-25 20:22:22,074 | INFO     | corecount: 4
[2025-11-25 21:23:29] 2025-11-25 20:22:22,075 | INFO     | event service: False
[2025-11-25 21:23:29] 2025-11-25 20:22:22,075 | INFO     | sizes: {0: 2284207, 1: 2284349, 8: 2284611, 11: 2284639, 56467: 2336447, 56471: 2345470, 56473: 2345654, 56481: 2345900}
[2025-11-25 21:23:29] 2025-11-25 20:22:22,075 | INFO     | --------------------------------------------------
[2025-11-25 21:23:29] 2025-11-25 20:22:22,075 | INFO     | 
[2025-11-25 21:23:29] 2025-11-25 20:22:22,075 | INFO     | executing command: ls -lF /scratch/boinc/var/slot112/slots/0
[2025-11-25 21:23:29] 2025-11-25 20:22:22,107 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 21:23:29] 2025-11-25 20:22:22,107 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 21:23:29] 2025-11-25 20:22:22,107 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 21:23:29] 2025-11-25 20:22:22,107 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 21:23:29] 2025-11-25 20:22:22,107 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 21:23:29] 2025-11-25 20:22:22,107 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 21:23:29] 2025-11-25 20:22:22,108 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 21:23:29] 2025-11-25 20:22:22,108 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 21:23:29] 2025-11-25 20:22:22,108 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 21:23:29] 2025-11-25 20:22:22,108 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 21:23:29] 2025-11-25 20:22:22,108 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 21:23:29] 2025-11-25 20:22:22,108 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 21:23:29] 2025-11-25 20:22:22,108 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 21:23:29] 2025-11-25 20:22:22,108 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 21:23:29] 2025-11-25 20:22:22,108 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 21:23:29] 2025-11-25 20:22:22,108 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 21:23:29] 2025-11-25 20:22:22,108 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 21:23:29] 2025-11-25 20:22:22,108 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 21:23:29] 2025-11-25 20:22:22,108 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 21:23:29] 2025-11-25 20:22:22,108 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 21:23:29] 2025-11-25 20:22:22,109 | INFO     | job 6893871893 has completed (purged errors)
[2025-11-25 21:23:29] 2025-11-25 20:22:22,109 | INFO     | overall cleanup function is called
[2025-11-25 21:23:29] 2025-11-25 20:22:23,123 | INFO     | --- collectZombieJob: --- 10, [1930140]
[2025-11-25 21:23:29] 2025-11-25 20:22:23,124 | INFO     | zombie collector waiting for pid 1930140
[2025-11-25 21:23:29] 2025-11-25 20:22:23,124 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 21:23:29] 2025-11-25 20:22:23,124 | INFO     | collected zombie processes
[2025-11-25 21:23:29] 2025-11-25 20:22:23,124 | INFO     | will attempt to kill all subprocesses of pid=1930140
[2025-11-25 21:23:29] 2025-11-25 20:22:23,924 | INFO     | process IDs to be killed: [1930140] (in reverse order)
[2025-11-25 21:23:29] 2025-11-25 20:22:24,189 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 21:23:29] 2025-11-25 20:22:24,189 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 21:23:29] 2025-11-25 20:22:24,226 | INFO     | did not find any defunct processes belonging to 1930140
[2025-11-25 21:23:29] 2025-11-25 20:22:24,260 | INFO     | did not find any defunct processes belonging to 1930140
[2025-11-25 21:23:29] 2025-11-25 20:22:24,262 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 21:23:29] 2025-11-25 20:22:24,262 | INFO     | ready for new job
[2025-11-25 21:23:29] 2025-11-25 20:22:24,262 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 21:23:29] 2025-11-25 20:22:24,269 | INFO     | ***************************************
[2025-11-25 21:23:29] 2025-11-25 20:22:24,269 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 21:23:29] 2025-11-25 20:22:24,269 | INFO     | ***************************************
[2025-11-25 21:23:29] 2025-11-25 20:22:24,270 | INFO     | 
[2025-11-25 21:23:29] 2025-11-25 20:22:24,278 | INFO     | architecture information:
[2025-11-25 21:23:29] 2025-11-25 20:22:24,279 | INFO     | executing command: cat /etc/os-release
[2025-11-25 21:23:29] 2025-11-25 20:22:24,303 | INFO     | cat /etc/os-release:
[2025-11-25 21:23:29] NAME="CentOS Linux"
[2025-11-25 21:23:29] VERSION="7 (Core)"
[2025-11-25 21:23:29] ID="centos"
[2025-11-25 21:23:29] ID_LIKE="rhel fedora"
[2025-11-25 21:23:29] VERSION_ID="7"
[2025-11-25 21:23:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 21:23:29] ANSI_COLOR="0;31"
[2025-11-25 21:23:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 21:23:29] HOME_URL="https://www.centos.org/"
[2025-11-25 21:23:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 21:23:29] 
[2025-11-25 21:23:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 21:23:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 21:23:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 21:23:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 21:23:29] 
[2025-11-25 21:23:29] 2025-11-25 20:22:24,304 | INFO     | ***************************************
[2025-11-25 21:23:29] 2025-11-25 20:22:24,807 | INFO     | executing command: df -mP /scratch/boinc/var/slot112/slots/0
[2025-11-25 21:23:29] 2025-11-25 20:22:24,835 | INFO     | sufficient remaining disk space (3267810557952 B)
[2025-11-25 21:23:29] 2025-11-25 20:22:24,835 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 21:23:29] 2025-11-25 20:22:24,836 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 21:23:29] 2025-11-25 20:22:24,836 | INFO     | update_server=False
[2025-11-25 21:23:29] 2025-11-25 20:22:24,836 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 21:23:29] 2025-11-25 20:22:24,836 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 21:23:29] 2025-11-25 20:22:24,837 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:23:29] 2025-11-25 20:22:24,837 | INFO     | aborting loop
[2025-11-25 21:23:29] 2025-11-25 20:22:24,922 | INFO     | all data control threads have been joined
[2025-11-25 21:23:29] 2025-11-25 20:22:25,094 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 21:23:29] 2025-11-25 20:22:25,210 | INFO     | all payload control threads have been joined
[2025-11-25 21:23:29] 2025-11-25 20:22:25,794 | INFO     | all job control threads have been joined
[2025-11-25 21:23:29] 2025-11-25 20:22:25,841 | INFO     | [job] retrieve thread has finished
[2025-11-25 21:23:29] 2025-11-25 20:22:25,843 | INFO     | [job] job monitor thread has finished
[2025-11-25 21:23:29] 2025-11-25 20:22:25,873 | INFO     | [payload] failed_post thread has finished
[2025-11-25 21:23:29] 2025-11-25 20:22:25,928 | INFO     | [data] control thread has finished
[2025-11-25 21:23:29] 2025-11-25 20:22:26,216 | INFO     | [payload] control thread has finished
[2025-11-25 21:23:29] 2025-11-25 20:22:26,366 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 21:23:29] 2025-11-25 20:22:26,457 | INFO     | [data] copytool_in thread has finished
[2025-11-25 21:23:29] 2025-11-25 20:22:26,768 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:23:29] 2025-11-25 20:22:26,800 | INFO     | [job] control thread has finished
[2025-11-25 21:23:29] 2025-11-25 20:22:26,860 | INFO     | [payload] validate_post thread has finished
[2025-11-25 21:23:29] 2025-11-25 20:22:26,938 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 21:23:29] 2025-11-25 20:22:26,983 | INFO     | [job] validate thread has finished
[2025-11-25 21:23:29] 2025-11-25 20:22:27,100 | INFO     | [data] copytool_out thread has finished
[2025-11-25 21:23:29] 2025-11-25 20:22:27,120 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 21:23:29] 2025-11-25 20:22:27,774 | INFO     | [job] queue monitor thread has finished
[2025-11-25 21:23:29] 2025-11-25 20:22:28,842 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 21:23:29] 2025-11-25 20:22:35,338 | INFO     | job.realtimelogging is not enabled
[2025-11-25 21:23:29] 2025-11-25 20:22:36,347 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 21:23:29] 2025-11-25 20:22:55,507 | INFO     | PID=1922354 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 21:23:29] 2025-11-25 20:22:55,507 | INFO     | .. there are 5 such processes running
[2025-11-25 21:23:29] 2025-11-25 20:22:55,508 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 21:23:29] 2025-11-25 20:22:55,508 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 21:23:29] 2025-11-25 20:22:55,508 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 21:23:29] 2025-11-25 20:23:15,164 | INFO     | [monitor] cgroup control has ended
[2025-11-25 21:23:29] 2025-11-25 20:23:16,022 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22591879264064)>', '<ExcThread(monitor, started 22591632787200)>']
[2025-11-25 21:23:29] 2025-11-25 20:23:16,608 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 21:23:29] 2025-11-25 20:23:16,609 | INFO     | [monitor] control thread has ended
[2025-11-25 21:23:29] 2025-11-25 20:23:21,046 | INFO     | all workflow threads have been joined
[2025-11-25 21:23:29] 2025-11-25 20:23:21,047 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 21:23:29] 2025-11-25 20:23:21,047 | INFO     | traces error code: 0
[2025-11-25 21:23:29] 2025-11-25 20:23:21,048 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 21:23:29] 2025-11-25 20:23:21,275 [wrapper] ==== pilot stdout END ====
[2025-11-25 21:23:29] 2025-11-25 20:23:21,279 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 21:23:29] 2025-11-25 20:23:21,283 [wrapper] pilotpid: 1922354
[2025-11-25 21:23:29] 2025-11-25 20:23:21,287 [wrapper] Pilot exit status: 0
[2025-11-25 21:23:29] 2025-11-25 20:23:21,301 [wrapper] pandaids: 6893871893
[2025-11-25 21:23:29] 2025-11-25 20:23:21,485 [wrapper] cleanup supervisor_pilot 3061934 1922355
[2025-11-25 21:23:29] 2025-11-25 20:23:21,490 [wrapper] Test setup, not cleaning
[2025-11-25 21:23:29] 2025-11-25 20:23:21,494 [wrapper] apfmon messages muted
[2025-11-25 21:23:29] 2025-11-25 20:23:21,498 [wrapper] ==== wrapper stdout END ====
[2025-11-25 21:23:29] 2025-11-25 20:23:21,502 [wrapper] ==== wrapper stderr END ====
[2025-11-25 21:23:29]  *** Error codes and diagnostics ***
[2025-11-25 21:23:29]     "exeErrorCode": 0,
[2025-11-25 21:23:29]     "exeErrorDiag": "",
[2025-11-25 21:23:29]     "pilotErrorCode": 0,
[2025-11-25 21:23:29]     "pilotErrorDiag": "",
[2025-11-25 21:23:29]  *** Listing of results directory ***
[2025-11-25 21:23:29] total 1318728
[2025-11-25 21:23:29] -rw-r--r-- 1 boinc boinc    576529 Nov 20 16:07 pilot3.tar.gz
[2025-11-25 21:23:29] -rw-r--r-- 1 boinc boinc      5112 Nov 20 16:09 queuedata.json
[2025-11-25 21:23:29] -rwx------ 1 boinc boinc     36292 Nov 20 16:10 runpilot2-wrapper.sh
[2025-11-25 21:23:29] -rw-r--r-- 1 boinc boinc       100 Nov 25 05:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 21:23:29] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 05:40 run_atlas
[2025-11-25 21:23:29] -rw-r--r-- 1 boinc boinc       105 Nov 25 05:40 job.xml
[2025-11-25 21:23:29] -rw-r--r-- 2 boinc boinc 410213842 Nov 25 05:40 EVNT.47493127._000670.pool.root.1
[2025-11-25 21:23:29] -rw-r--r-- 1 boinc boinc      6687 Nov 25 05:40 init_data.xml
[2025-11-25 21:23:29] -rw-r--r-- 2 boinc boinc     15847 Nov 25 05:40 start_atlas.sh
[2025-11-25 21:23:29] drwxrwx--x 2 boinc boinc      4096 Nov 25 05:40 shared
[2025-11-25 21:23:29] -rw-r--r-- 2 boinc boinc    590100 Nov 25 05:40 input.tar.gz
[2025-11-25 21:23:29] -rw-r--r-- 1 boinc boinc         0 Nov 25 05:40 boinc_lockfile
[2025-11-25 21:23:29] -rw-r--r-- 1 boinc boinc      2785 Nov 25 05:40 pandaJob.out
[2025-11-25 21:23:29] -rw------- 1 boinc boinc    991801 Nov 25 05:40 agis_schedconf.cvmfs.json
[2025-11-25 21:23:29] drwx------ 5 boinc boinc      4096 Nov 25 05:40 pilot3
[2025-11-25 21:23:29] -rw-r--r-- 1 boinc boinc       531 Nov 25 21:16 boinc_task_state.xml
[2025-11-25 21:23:29] -rw------- 1 boinc boinc 917366751 Nov 25 21:21 HITS.47523449._006693.pool.root.1
[2025-11-25 21:23:29] -rw------- 1 boinc boinc      1041 Nov 25 21:22 memory_monitor_summary.json
[2025-11-25 21:23:29] -rw------- 1 boinc boinc   1516240 Nov 25 21:22 agis_ddmendpoints.agis.ALL.json
[2025-11-25 21:23:29] -rw------- 1 boinc boinc   1674371 Nov 25 21:22 log.47523449._006693.job.log.tgz.1
[2025-11-25 21:23:29] -rw------- 1 boinc boinc      7923 Nov 25 21:22 heartbeat.json
[2025-11-25 21:23:29] -rw------- 1 boinc boinc        95 Nov 25 21:22 pilot_heartbeat.json
[2025-11-25 21:23:29] -rw------- 1 boinc boinc      4907 Nov 25 21:23 pilotlog.txt
[2025-11-25 21:23:29] -rw------- 1 boinc boinc   7766622 Nov 25 21:23 log.47523449._006693.job.log.1
[2025-11-25 21:23:29] -rw------- 1 boinc boinc       353 Nov 25 21:23 output.list
[2025-11-25 21:23:29] -rw-r--r-- 1 boinc boinc       620 Nov 25 21:23 runtime_log
[2025-11-25 21:23:29] -rw------- 1 boinc boinc   9461760 Nov 25 21:23 result.tar.gz
[2025-11-25 21:23:29] -rw------- 1 boinc boinc       670 Nov 25 21:23 zNpNDmVTLg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmSqGKDmg7wvrn.diag
[2025-11-25 21:23:29] -rw-r--r-- 1 boinc boinc      9223 Nov 25 21:23 runtime_log.err
[2025-11-25 21:23:29] -rw-r--r-- 1 boinc boinc        28 Nov 25 21:23 wrapper_checkpoint.txt
[2025-11-25 21:23:29] -rw-r--r-- 1 boinc boinc      8192 Nov 25 21:23 boinc_mmap_file
[2025-11-25 21:23:29] -rw-r--r-- 1 boinc boinc     21047 Nov 25 21:23 stderr.txt
[2025-11-25 21:23:29] HITS file was successfully produced:
[2025-11-25 21:23:29] -rw------- 1 boinc boinc 917366751 Nov 25 21:21 shared/HITS.pool.root.1
[2025-11-25 21:23:29]  *** Contents of shared directory: ***
[2025-11-25 21:23:29] total 1306312
[2025-11-25 21:23:29] -rw-r--r-- 2 boinc boinc 410213842 Nov 25 05:40 ATLAS.root_0
[2025-11-25 21:23:29] -rw-r--r-- 2 boinc boinc     15847 Nov 25 05:40 start_atlas.sh
[2025-11-25 21:23:29] -rw-r--r-- 2 boinc boinc    590100 Nov 25 05:40 input.tar.gz
[2025-11-25 21:23:29] -rw------- 1 boinc boinc 917366751 Nov 25 21:21 HITS.pool.root.1
[2025-11-25 21:23:29] -rw------- 1 boinc boinc   9461760 Nov 25 21:23 result.tar.gz
21:23:30 (1918363): run_atlas exited; CPU time 227055.441886
21:23:30 (1918363): called boinc_finish(0)

</stderr_txt>
]]>

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