Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:14:21 (24820): wrapper (7.7.26015): starting
02:14:21 (24820): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 02:14:21] Arguments: --nthreads 8
[2025-11-24 02:14:21] Threads: 8
[2025-11-24 02:14:21] Checking for CVMFS
[2025-11-24 02:14:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 02:14:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 02:14:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 02:14:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 02:14:24] 2.11.2.0 2066 85109 98484 153227 1 85 13151043 25165824 4632 130560 2 22883046 99.897 12602124 2070 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 02:14:24] CVMFS is ok
[2025-11-24 02:14:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 02:14:24] Checking for apptainer binary...
[2025-11-24 02:14:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 02:14:24] Running /usr/bin/apptainer --version
[2025-11-24 02:14:24] apptainer version 1.3.2-1.el7
[2025-11-24 02:14:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 02:14:31] cg-vwn446.simple-grid.lan
[2025-11-24 02:14:31] apptainer works
[2025-11-24 02:14:32] Set ATHENA_PROC_NUMBER=8
[2025-11-24 02:14:32] Set ATHENA_CORE_NUMBER=8
[2025-11-24 02:14:32] Starting ATLAS job with PandaID=6893869789
[2025-11-24 02:14:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 02:30:13]  *** The last 200 lines of the pilot log: ***
[2025-11-25 02:30:13] 2025-11-25 01:29:20,893 | INFO     | time since job start (87049s) is within the limit (172800.0s)
[2025-11-25 02:30:13] 2025-11-25 01:29:22,900 | INFO     | time since job start (87051s) is within the limit (172800.0s)
[2025-11-25 02:30:13] 2025-11-25 01:29:24,060 | INFO     | PID=28610 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 02:30:13] 2025-11-25 01:29:24,060 | INFO     | .. there are 9 such processes running
[2025-11-25 02:30:13] 2025-11-25 01:29:25,061 | INFO     | time since job start (87054s) is within the limit (172800.0s)
[2025-11-25 02:30:13] 2025-11-25 01:29:27,071 | INFO     | time since job start (87056s) is within the limit (172800.0s)
[2025-11-25 02:30:13] 2025-11-25 01:29:29,078 | INFO     | time since job start (87058s) is within the limit (172800.0s)
[2025-11-25 02:30:13] 2025-11-25 01:29:29,281 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 02:30:13] 2025-11-25 01:29:29,282 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 02:30:13] 2025-11-25 01:29:29,284 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6893869789/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 02:30:13] 2025-11-25 01:29:29,284 | INFO     | extracted standard info from prmon json
[2025-11-25 02:30:13] 2025-11-25 01:29:29,285 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 02:30:13] 2025-11-25 01:29:29,285 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 02:30:13] 2025-11-25 01:29:29,320 | INFO     | fitting pss+swap vs Time
[2025-11-25 02:30:13] 2025-11-25 01:29:29,328 | INFO     | sum of square deviations: 882240002754.5953
[2025-11-25 02:30:13] 2025-11-25 01:29:29,428 | INFO     | sum of deviations: 3857692002319.1865
[2025-11-25 02:30:13] 2025-11-25 01:29:29,428 | INFO     | mean x: 1763990825.1750176
[2025-11-25 02:30:13] 2025-11-25 01:29:29,428 | INFO     | mean y: 2833030.2371206777
[2025-11-25 02:30:13] 2025-11-25 01:29:29,429 | INFO     | intersect: -7710411979.278679
[2025-11-25 02:30:13] 2025-11-25 01:29:29,430 | INFO     | chi2: 28.43717155168163
[2025-11-25 02:30:13] 2025-11-25 01:29:29,433 | INFO     | sum of square deviations: 872934233757.6681
[2025-11-25 02:30:13] 2025-11-25 01:29:29,519 | INFO     | sum of deviations: 4322605474344.189
[2025-11-25 02:30:13] 2025-11-25 01:29:29,519 | INFO     | mean x: 1763990672.6791785
[2025-11-25 02:30:13] 2025-11-25 01:29:29,519 | INFO     | mean y: 2840648.064447592
[2025-11-25 02:30:13] 2025-11-25 01:29:29,519 | INFO     | intersect: -8732108038.266787
[2025-11-25 02:30:13] 2025-11-25 01:29:29,521 | INFO     | chi2: 25.263600477541992
[2025-11-25 02:30:13] 2025-11-25 01:29:29,522 | INFO     | current chi2=25.263600477541992 (change=11.159939266013144 %)
[2025-11-25 02:30:13] 2025-11-25 01:29:29,522 | INFO     | right removable region: 1411
[2025-11-25 02:30:13] 2025-11-25 01:29:29,524 | INFO     | sum of square deviations: 872933218107.6672
[2025-11-25 02:30:13] 2025-11-25 01:29:29,567 | INFO     | sufficient remaining disk space (494603862016 B)
[2025-11-25 02:30:13] 2025-11-25 01:29:29,567 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-11-25 02:30:13] 2025-11-25 01:29:29,571 | INFO     | size of work directory /var/lib/boinc/slots/6/PanDA_Pilot-6893869789: 8443251 B (within 2537553920 B limit)
[2025-11-25 02:30:13] 2025-11-25 01:29:29,572 | INFO     | pfn file=/var/lib/boinc/slots/6/PanDA_Pilot-6893869789/HITS.47523449._006418.pool.root.1 does not exist (skip from workdir size calculation)
[2025-11-25 02:30:13] 2025-11-25 01:29:29,572 | INFO     | total size of present files: 0 B (workdir size: 8443251 B)
[2025-11-25 02:30:13] 2025-11-25 01:29:29,572 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/6/PanDA_Pilot-6893869789/HITS.47523449._006418.pool.root.1 since it does not exist
[2025-11-25 02:30:13] 2025-11-25 01:29:29,616 | INFO     | sum of deviations: 3253114747562.822
[2025-11-25 02:30:13] 2025-11-25 01:29:29,616 | INFO     | mean x: 1763990977.6791785
[2025-11-25 02:30:13] 2025-11-25 01:29:29,616 | INFO     | mean y: 2842936.783286119
[2025-11-25 02:30:13] 2025-11-25 01:29:29,616 | INFO     | intersect: -6570930342.798927
[2025-11-25 02:30:13] 2025-11-25 01:29:29,618 | INFO     | chi2: 23.43738742628624
[2025-11-25 02:30:13] 2025-11-25 01:29:29,618 | INFO     | current chi2=23.43738742628624 (change=17.58186153045776 %)
[2025-11-25 02:30:13] 2025-11-25 01:29:29,618 | INFO     | left removable region: 10
[2025-11-25 02:30:13] 2025-11-25 01:29:29,620 | INFO     | sum of square deviations: 852690361504.2518
[2025-11-25 02:30:13] 2025-11-25 01:29:29,736 | INFO     | sum of deviations: 3262677390456.208
[2025-11-25 02:30:13] 2025-11-25 01:29:29,737 | INFO     | mean x: 1763990947.1884367
[2025-11-25 02:30:13] 2025-11-25 01:29:29,737 | INFO     | mean y: 2861571.840114204
[2025-11-25 02:30:13] 2025-11-25 01:29:29,737 | INFO     | intersect: -6746755452.33736
[2025-11-25 02:30:13] 2025-11-25 01:29:29,739 | INFO     | chi2: 15.335589079383091
[2025-11-25 02:30:13] 2025-11-25 01:29:29,739 | INFO     | current memory leak: 3.83 B/s (using 1401 data points, chi2=15.34)
[2025-11-25 02:30:13] 2025-11-25 01:29:29,741 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-11-25 02:30:13] 2025-11-25 01:29:29,742 | INFO     | ..............................
[2025-11-25 02:30:13] 2025-11-25 01:29:29,742 | INFO     | . Timing measurements:
[2025-11-25 02:30:13] 2025-11-25 01:29:29,742 | INFO     | . get job = 0 s
[2025-11-25 02:30:13] 2025-11-25 01:29:29,742 | INFO     | . initial setup = 12 s
[2025-11-25 02:30:13] 2025-11-25 01:29:29,742 | INFO     | . payload setup = 157 s
[2025-11-25 02:30:13] 2025-11-25 01:29:29,742 | INFO     | . stage-in = 0 s
[2025-11-25 02:30:13] 2025-11-25 01:29:29,742 | INFO     | . payload execution = 86588 s
[2025-11-25 02:30:13] 2025-11-25 01:29:29,742 | INFO     | . stage-out = 5 s
[2025-11-25 02:30:13] 2025-11-25 01:29:29,742 | INFO     | . log creation = 2 s
[2025-11-25 02:30:13] 2025-11-25 01:29:29,743 | INFO     | ..............................
[2025-11-25 02:30:13] 2025-11-25 01:29:29,969 | INFO     | 
[2025-11-25 02:30:13] 2025-11-25 01:29:29,970 | INFO     | job summary report
[2025-11-25 02:30:13] 2025-11-25 01:29:29,970 | INFO     | --------------------------------------------------
[2025-11-25 02:30:13] 2025-11-25 01:29:29,970 | INFO     | PanDA job id: 6893869789
[2025-11-25 02:30:13] 2025-11-25 01:29:29,970 | INFO     | task id: 47523449
[2025-11-25 02:30:13] 2025-11-25 01:29:29,970 | INFO     | errors: (none)
[2025-11-25 02:30:13] 2025-11-25 01:29:29,970 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 02:30:13] 2025-11-25 01:29:29,970 | INFO     | pilot state: finished 
[2025-11-25 02:30:13] 2025-11-25 01:29:29,970 | INFO     | transexitcode: 0
[2025-11-25 02:30:13] 2025-11-25 01:29:29,971 | INFO     | exeerrorcode: 0
[2025-11-25 02:30:13] 2025-11-25 01:29:29,971 | INFO     | exeerrordiag: 
[2025-11-25 02:30:13] 2025-11-25 01:29:29,971 | INFO     | exitcode: 0
[2025-11-25 02:30:13] 2025-11-25 01:29:29,971 | INFO     | exitmsg: OK
[2025-11-25 02:30:13] 2025-11-25 01:29:29,971 | INFO     | cpuconsumptiontime: 335118 s
[2025-11-25 02:30:13] 2025-11-25 01:29:29,971 | INFO     | nevents: 1000
[2025-11-25 02:30:13] 2025-11-25 01:29:29,971 | INFO     | neventsw: 0
[2025-11-25 02:30:13] 2025-11-25 01:29:29,971 | INFO     | pid: 2815
[2025-11-25 02:30:13] 2025-11-25 01:29:29,971 | INFO     | pgrp: 2815
[2025-11-25 02:30:13] 2025-11-25 01:29:29,971 | INFO     | corecount: 8
[2025-11-25 02:30:13] 2025-11-25 01:29:29,971 | INFO     | event service: False
[2025-11-25 02:30:13] 2025-11-25 01:29:29,971 | INFO     | sizes: {0: 2298579, 1: 2298834, 12: 2298834, 23: 2298862, 34: 2298890, 44: 2298918, 55: 2299074, 66: 2299102, 77: 2299130, 87: 2299186, 98: 2299214, 102: 2299784, 
[2025-11-25 02:30:13] 2025-11-25 01:29:29,972 | INFO     | --------------------------------------------------
[2025-11-25 02:30:13] 2025-11-25 01:29:29,972 | INFO     | 
[2025-11-25 02:30:13] 2025-11-25 01:29:29,972 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-25 02:30:13] 2025-11-25 01:29:30,022 | INFO     | number of running child processes to parent process 2815: 1
[2025-11-25 02:30:13] 2025-11-25 01:29:30,023 | INFO     | maximum number of monitored processes: 16
[2025-11-25 02:30:13] 2025-11-25 01:29:30,028 | INFO     | aborting job monitoring since job object (job id=6893869789) has expired
[2025-11-25 02:30:13] 2025-11-25 01:29:30,619 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 02:30:13] 2025-11-25 01:29:30,620 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 02:30:13] 2025-11-25 01:29:30,620 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 02:30:13] 2025-11-25 01:29:30,620 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 02:30:13] 2025-11-25 01:29:30,620 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 02:30:13] 2025-11-25 01:29:30,620 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 02:30:13] 2025-11-25 01:29:30,620 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 02:30:13] 2025-11-25 01:29:30,620 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 02:30:13] 2025-11-25 01:29:30,620 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 02:30:13] 2025-11-25 01:29:30,621 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 02:30:13] 2025-11-25 01:29:30,621 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 02:30:13] 2025-11-25 01:29:30,621 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 02:30:13] 2025-11-25 01:29:30,621 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 02:30:13] 2025-11-25 01:29:30,621 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 02:30:13] 2025-11-25 01:29:30,621 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 02:30:13] 2025-11-25 01:29:30,621 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 02:30:13] 2025-11-25 01:29:30,621 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 02:30:13] 2025-11-25 01:29:30,621 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 02:30:13] 2025-11-25 01:29:30,621 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 02:30:13] 2025-11-25 01:29:30,621 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 02:30:13] 2025-11-25 01:29:30,622 | INFO     | job 6893869789 has completed (purged errors)
[2025-11-25 02:30:13] 2025-11-25 01:29:30,622 | INFO     | overall cleanup function is called
[2025-11-25 02:30:13] 2025-11-25 01:29:31,642 | INFO     | --- collectZombieJob: --- 10, [2815]
[2025-11-25 02:30:13] 2025-11-25 01:29:31,643 | INFO     | zombie collector waiting for pid 2815
[2025-11-25 02:30:13] 2025-11-25 01:29:31,643 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 02:30:13] 2025-11-25 01:29:31,643 | INFO     | collected zombie processes
[2025-11-25 02:30:13] 2025-11-25 01:29:31,643 | INFO     | will attempt to kill all subprocesses of pid=2815
[2025-11-25 02:30:13] 2025-11-25 01:29:31,740 | INFO     | process IDs to be killed: [2815] (in reverse order)
[2025-11-25 02:30:13] 2025-11-25 01:29:32,692 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 02:30:13] 2025-11-25 01:29:32,693 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 02:30:13] 2025-11-25 01:29:32,696 | INFO     | did not find any defunct processes belonging to 2815
[2025-11-25 02:30:13] 2025-11-25 01:29:32,699 | INFO     | did not find any defunct processes belonging to 2815
[2025-11-25 02:30:13] 2025-11-25 01:29:32,749 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 02:30:13] 2025-11-25 01:29:32,749 | INFO     | ready for new job
[2025-11-25 02:30:13] 2025-11-25 01:29:32,749 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 02:30:13] 2025-11-25 01:29:32,755 | INFO     | ***************************************
[2025-11-25 02:30:13] 2025-11-25 01:29:32,755 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 02:30:13] 2025-11-25 01:29:32,755 | INFO     | ***************************************
[2025-11-25 02:30:13] 2025-11-25 01:29:32,755 | INFO     | 
[2025-11-25 02:30:13] 2025-11-25 01:29:32,756 | INFO     | pilot is running in a VM
[2025-11-25 02:30:13] 2025-11-25 01:29:32,756 | INFO     | architecture information:
[2025-11-25 02:30:13] 2025-11-25 01:29:32,762 | INFO     | executing command: cat /etc/os-release
[2025-11-25 02:30:13] 2025-11-25 01:29:32,974 | INFO     | cat /etc/os-release:
[2025-11-25 02:30:13] NAME="CentOS Linux"
[2025-11-25 02:30:13] VERSION="7 (Core)"
[2025-11-25 02:30:13] ID="centos"
[2025-11-25 02:30:13] ID_LIKE="rhel fedora"
[2025-11-25 02:30:13] VERSION_ID="7"
[2025-11-25 02:30:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 02:30:13] ANSI_COLOR="0;31"
[2025-11-25 02:30:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 02:30:13] HOME_URL="https://www.centos.org/"
[2025-11-25 02:30:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 02:30:13] 
[2025-11-25 02:30:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 02:30:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 02:30:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 02:30:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 02:30:13] 
[2025-11-25 02:30:13] 2025-11-25 01:29:32,974 | INFO     | ***************************************
[2025-11-25 02:30:13] 2025-11-25 01:29:33,478 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-25 02:30:13] 2025-11-25 01:29:33,625 | INFO     | sufficient remaining disk space (494625882112 B)
[2025-11-25 02:30:13] 2025-11-25 01:29:33,626 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 02:30:13] 2025-11-25 01:29:33,626 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 02:30:13] 2025-11-25 01:29:33,626 | INFO     | update_server=False
[2025-11-25 02:30:13] 2025-11-25 01:29:33,626 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 02:30:13] 2025-11-25 01:29:33,631 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 02:30:13] 2025-11-25 01:29:33,631 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 02:30:13] 2025-11-25 01:29:33,631 | INFO     | aborting loop
[2025-11-25 02:30:13] 2025-11-25 01:29:34,035 | INFO     | all job control threads have been joined
[2025-11-25 02:30:13] 2025-11-25 01:29:34,141 | INFO     | all data control threads have been joined
[2025-11-25 02:30:13] 2025-11-25 01:29:34,632 | INFO     | [job] retrieve thread has finished
[2025-11-25 02:30:13] 2025-11-25 01:29:34,636 | INFO     | [job] job monitor thread has finished
[2025-11-25 02:30:13] 2025-11-25 01:29:34,674 | INFO     | all payload control threads have been joined
[2025-11-25 02:30:13] 2025-11-25 01:29:34,677 | INFO     | [job] validate thread has finished
[2025-11-25 02:30:13] 2025-11-25 01:29:34,747 | INFO     | [data] copytool_in thread has finished
[2025-11-25 02:30:13] 2025-11-25 01:29:34,775 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 02:30:13] 2025-11-25 01:29:34,986 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 02:30:13] 2025-11-25 01:29:35,042 | INFO     | [job] control thread has finished
[2025-11-25 02:30:13] 2025-11-25 01:29:35,109 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 02:30:13] 2025-11-25 01:29:35,114 | INFO     | [payload] validate_post thread has finished
[2025-11-25 02:30:13] 2025-11-25 01:29:35,148 | INFO     | [data] control thread has finished
[2025-11-25 02:30:13] 2025-11-25 01:29:35,499 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 02:30:13] 2025-11-25 01:29:35,639 | INFO     | [data] copytool_out thread has finished
[2025-11-25 02:30:13] 2025-11-25 01:29:35,680 | INFO     | [payload] control thread has finished
[2025-11-25 02:30:13] 2025-11-25 01:29:35,774 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 02:30:13] 2025-11-25 01:29:35,973 | INFO     | [payload] failed_post thread has finished
[2025-11-25 02:30:13] 2025-11-25 01:29:35,992 | INFO     | [job] queue monitor thread has finished
[2025-11-25 02:30:13] 2025-11-25 01:29:36,974 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 02:30:13] 2025-11-25 01:29:40,984 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 02:30:13] 2025-11-25 01:30:02,272 | INFO     | PID=28610 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 02:30:13] 2025-11-25 01:30:02,272 | INFO     | .. there are 9 such processes running
[2025-11-25 02:30:13] 2025-11-25 01:30:02,274 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 02:30:13] 2025-11-25 01:30:02,274 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 02:30:13] 2025-11-25 01:30:02,274 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 02:30:13] 2025-11-25 01:30:02,417 | INFO     | [monitor] cgroup control has ended
[2025-11-25 02:30:13] 2025-11-25 01:30:03,958 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140446983644992)>', '<ExcThread(monitor, started 140446537856768)>']
[2025-11-25 02:30:13] 2025-11-25 01:30:04,286 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 02:30:13] 2025-11-25 01:30:04,287 | INFO     | [monitor] control thread has ended
[2025-11-25 02:30:13] 2025-11-25 01:30:08,983 | INFO     | all workflow threads have been joined
[2025-11-25 02:30:13] 2025-11-25 01:30:08,984 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 02:30:13] 2025-11-25 01:30:08,984 | INFO     | traces error code: 0
[2025-11-25 02:30:13] 2025-11-25 01:30:08,984 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 02:30:13] 2025-11-25 01:30:09,469 [wrapper] ==== pilot stdout END ====
[2025-11-25 02:30:13] 2025-11-25 01:30:09,526 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 02:30:13] 2025-11-25 01:30:09,654 [wrapper] pilotpid: 28610
[2025-11-25 02:30:13] 2025-11-25 01:30:09,766 [wrapper] Pilot exit status: 0
[2025-11-25 02:30:13] 2025-11-25 01:30:10,046 [wrapper] pandaids: 6893869789
[2025-11-25 02:30:13] 2025-11-25 01:30:10,869 [wrapper] cleanup supervisor_pilot 30875 28611
[2025-11-25 02:30:13] 2025-11-25 01:30:10,943 [wrapper] Test setup, not cleaning
[2025-11-25 02:30:13] 2025-11-25 01:30:11,034 [wrapper] apfmon messages muted
[2025-11-25 02:30:13] 2025-11-25 01:30:11,129 [wrapper] ==== wrapper stdout END ====
[2025-11-25 02:30:13] 2025-11-25 01:30:11,245 [wrapper] ==== wrapper stderr END ====
[2025-11-25 02:30:13]  *** Error codes and diagnostics ***
[2025-11-25 02:30:13]     "exeErrorCode": 0,
[2025-11-25 02:30:13]     "exeErrorDiag": "",
[2025-11-25 02:30:13]     "pilotErrorCode": 0,
[2025-11-25 02:30:13]     "pilotErrorDiag": "",
[2025-11-25 02:30:13]  *** Listing of results directory ***
[2025-11-25 02:30:13] total 1323328
[2025-11-25 02:30:13] -rw-r--r--. 1 boinc boinc    576529 Nov 20 15:06 pilot3.tar.gz
[2025-11-25 02:30:13] -rw-r--r--. 1 boinc boinc      5112 Nov 20 15:45 queuedata.json
[2025-11-25 02:30:13] -rwx------. 1 boinc boinc     36292 Nov 20 15:46 runpilot2-wrapper.sh
[2025-11-25 02:30:13] -rw-r--r--. 1 boinc boinc       100 Nov 24 02:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 02:30:13] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 02:14 run_atlas
[2025-11-25 02:30:13] -rw-r--r--. 1 boinc boinc       105 Nov 24 02:14 job.xml
[2025-11-25 02:30:13] -rw-r--r--. 2 boinc boinc 408679721 Nov 24 02:14 EVNT.47493127._000642.pool.root.1
[2025-11-25 02:30:13] -rw-r--r--. 1 boinc boinc      6393 Nov 24 02:14 init_data.xml
[2025-11-25 02:30:13] -rw-r--r--. 2 boinc boinc     15847 Nov 24 02:14 start_atlas.sh
[2025-11-25 02:30:13] drwxrwx--x. 2 boinc boinc        68 Nov 24 02:14 shared
[2025-11-25 02:30:13] -rw-r--r--. 2 boinc boinc    590094 Nov 24 02:14 input.tar.gz
[2025-11-25 02:30:13] -rw-r--r--. 1 boinc boinc         0 Nov 24 02:14 boinc_lockfile
[2025-11-25 02:30:13] -rw-r--r--. 1 boinc boinc      2785 Nov 24 02:14 pandaJob.out
[2025-11-25 02:30:13] -rw-------. 1 boinc boinc    989786 Nov 24 02:18 agis_schedconf.cvmfs.json
[2025-11-25 02:30:13] drwx------. 5 boinc boinc      4096 Nov 24 02:18 pilot3
[2025-11-25 02:30:13] -rw-r--r--. 1 boinc boinc       533 Nov 25 02:05 boinc_task_state.xml
[2025-11-25 02:30:13] -rw-------. 1 boinc boinc 914386119 Nov 25 02:26 HITS.47523449._006418.pool.root.1
[2025-11-25 02:30:13] -rw-------. 1 boinc boinc      1030 Nov 25 02:27 memory_monitor_summary.json
[2025-11-25 02:30:13] -rw-------. 1 boinc boinc   1516227 Nov 25 02:27 agis_ddmendpoints.agis.ALL.json
[2025-11-25 02:30:13] -rw-------. 1 boinc boinc   2499932 Nov 25 02:27 log.47523449._006418.job.log.tgz.1
[2025-11-25 02:30:13] -rw-------. 1 boinc boinc      7950 Nov 25 02:29 heartbeat.json
[2025-11-25 02:30:13] -rw-r--r--. 1 boinc boinc      8192 Nov 25 02:29 boinc_mmap_file
[2025-11-25 02:30:13] -rw-r--r--. 1 boinc boinc        29 Nov 25 02:29 wrapper_checkpoint.txt
[2025-11-25 02:30:13] -rw-------. 1 boinc boinc        95 Nov 25 02:30 pilot_heartbeat.json
[2025-11-25 02:30:13] -rw-------. 1 boinc boinc      4884 Nov 25 02:30 pilotlog.txt
[2025-11-25 02:30:13] -rw-------. 1 boinc boinc  11561236 Nov 25 02:30 log.47523449._006418.job.log.1
[2025-11-25 02:30:13] -rw-------. 1 boinc boinc       353 Nov 25 02:30 output.list
[2025-11-25 02:30:13] -rw-r--r--. 1 boinc boinc       620 Nov 25 02:30 runtime_log
[2025-11-25 02:30:13] -rw-------. 1 boinc boinc  14080000 Nov 25 02:30 result.tar.gz
[2025-11-25 02:30:13] -rw-r--r--. 1 boinc boinc      8817 Nov 25 02:30 runtime_log.err
[2025-11-25 02:30:13] -rw-------. 1 boinc boinc       662 Nov 25 02:30 qCcMDmQ6Kg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDme8HKDm40pqXo.diag
[2025-11-25 02:30:13] -rw-r--r--. 1 boinc boinc     21635 Nov 25 02:30 stderr.txt
[2025-11-25 02:30:13] HITS file was successfully produced:
[2025-11-25 02:30:13] -rw-------. 1 boinc boinc 914386119 Nov 25 02:26 shared/HITS.pool.root.1
[2025-11-25 02:30:13]  *** Contents of shared directory: ***
[2025-11-25 02:30:13] total 1306408
[2025-11-25 02:30:13] -rw-r--r--. 2 boinc boinc 408679721 Nov 24 02:14 ATLAS.root_0
[2025-11-25 02:30:13] -rw-r--r--. 2 boinc boinc     15847 Nov 24 02:14 start_atlas.sh
[2025-11-25 02:30:13] -rw-r--r--. 2 boinc boinc    590094 Nov 24 02:14 input.tar.gz
[2025-11-25 02:30:13] -rw-------. 1 boinc boinc 914386119 Nov 25 02:26 HITS.pool.root.1
[2025-11-25 02:30:13] -rw-------. 1 boinc boinc  14080000 Nov 25 02:30 result.tar.gz
02:30:14 (24820): run_atlas exited; CPU time 335695.096414
02:30:14 (24820): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN