Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:34:24 (1674): wrapper (7.7.26015): starting
03:34:24 (1674): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 03:34:24] Arguments: --nthreads 8
[2025-11-24 03:34:24] Threads: 8
[2025-11-24 03:34:24] Checking for CVMFS
[2025-11-24 03:34:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 03:34:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 03:34:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 03:34:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 03:34:26] 2.11.2.0 26867 281734 139804 153229 2 84 15326582 25165825 4632 130560 2 134787974 99.878 74288585 2910 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 03:34:26] CVMFS is ok
[2025-11-24 03:34:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 03:34:26] Checking for apptainer binary...
[2025-11-24 03:34:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 03:34:26] Running /usr/bin/apptainer --version
[2025-11-24 03:34:26] apptainer version 1.3.2-1.el7
[2025-11-24 03:34:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 03:34:52] cg-vwn435.simple-grid.lan
[2025-11-24 03:34:52] apptainer works
[2025-11-24 03:34:52] Set ATHENA_PROC_NUMBER=8
[2025-11-24 03:34:52] Set ATHENA_CORE_NUMBER=8
[2025-11-24 03:34:52] Starting ATLAS job with PandaID=6893868206
[2025-11-24 03:34:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 00:34:15]  *** The last 200 lines of the pilot log: ***
[2025-11-25 00:34:15] 2025-11-24 23:32:49,937 | INFO     | time since job start (75237s) is within the limit (172800.0s)
[2025-11-25 00:34:15] 2025-11-24 23:32:51,944 | INFO     | time since job start (75239s) is within the limit (172800.0s)
[2025-11-25 00:34:15] 2025-11-24 23:32:52,295 | INFO     | monitor loop #5050: job 0:6893868206 is in state 'finished'
[2025-11-25 00:34:15] 2025-11-24 23:32:52,296 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:34:15] 2025-11-24 23:32:53,085 | INFO     | PID=5516 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-25 00:34:15] 2025-11-24 23:32:53,085 | INFO     | .. there are 2 such processes running
[2025-11-25 00:34:15] 2025-11-24 23:32:54,086 | INFO     | time since job start (75242s) is within the limit (172800.0s)
[2025-11-25 00:34:15] 2025-11-24 23:32:54,804 | INFO     | monitor loop #5051: job 0:6893868206 is in state 'finished'
[2025-11-25 00:34:15] 2025-11-24 23:32:54,805 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:34:15] 2025-11-24 23:32:56,093 | INFO     | time since job start (75244s) is within the limit (172800.0s)
[2025-11-25 00:34:15] 2025-11-24 23:32:57,320 | INFO     | monitor loop #5052: job 0:6893868206 is in state 'finished'
[2025-11-25 00:34:15] 2025-11-24 23:32:57,321 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:34:15] 2025-11-24 23:32:58,101 | INFO     | time since job start (75246s) is within the limit (172800.0s)
[2025-11-25 00:34:15] 2025-11-24 23:32:59,833 | INFO     | monitor loop #5053: job 0:6893868206 is in state 'finished'
[2025-11-25 00:34:15] 2025-11-24 23:32:59,834 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:34:15] 2025-11-24 23:33:00,110 | INFO     | time since job start (75248s) is within the limit (172800.0s)
[2025-11-25 00:34:15] 2025-11-24 23:33:00,833 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 00:34:15] 2025-11-24 23:33:00,834 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 00:34:15] 2025-11-24 23:33:00,835 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6893868206/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 00:34:15] 2025-11-24 23:33:00,836 | INFO     | extracted standard info from prmon json
[2025-11-25 00:34:15] 2025-11-24 23:33:00,836 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 00:34:15] 2025-11-24 23:33:00,836 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 00:34:15] 2025-11-24 23:33:00,871 | INFO     | fitting pss+swap vs Time
[2025-11-25 00:34:15] 2025-11-24 23:33:00,873 | INFO     | sum of square deviations: 568625849379.8748
[2025-11-25 00:34:15] 2025-11-24 23:33:00,940 | INFO     | sum of deviations: 2500430200933.413
[2025-11-25 00:34:15] 2025-11-24 23:33:00,940 | INFO     | mean x: 1763989739.5416667
[2025-11-25 00:34:15] 2025-11-24 23:33:00,941 | INFO     | mean y: 2812858.8937908495
[2025-11-25 00:34:15] 2025-11-24 23:33:00,941 | INFO     | intersect: -7754015684.333454
[2025-11-25 00:34:15] 2025-11-24 23:33:00,942 | INFO     | chi2: 32.05985655757919
[2025-11-25 00:34:15] 2025-11-24 23:33:00,944 | INFO     | sum of square deviations: 561686275569.4279
[2025-11-25 00:34:15] 2025-11-24 23:33:00,998 | INFO     | sum of deviations: 2892308132795.0435
[2025-11-25 00:34:15] 2025-11-24 23:33:00,998 | INFO     | mean x: 1763989587.0459392
[2025-11-25 00:34:15] 2025-11-24 23:33:00,998 | INFO     | mean y: 2821468.92780968
[2025-11-25 00:34:15] 2025-11-24 23:33:00,998 | INFO     | intersect: -9080543481.740461
[2025-11-25 00:34:15] 2025-11-24 23:33:01,000 | INFO     | chi2: 28.851061238457632
[2025-11-25 00:34:15] 2025-11-24 23:33:01,000 | INFO     | current chi2=28.851061238457632 (change=10.00876380516111 %)
[2025-11-25 00:34:15] 2025-11-24 23:33:01,000 | INFO     | right removable region: 1218
[2025-11-25 00:34:15] 2025-11-24 23:33:01,002 | INFO     | sum of square deviations: 561685497819.4274
[2025-11-25 00:34:15] 2025-11-24 23:33:01,064 | INFO     | sum of deviations: 1982659797541.2002
[2025-11-25 00:34:15] 2025-11-24 23:33:01,065 | INFO     | mean x: 1763989892.0459392
[2025-11-25 00:34:15] 2025-11-24 23:33:01,065 | INFO     | mean y: 2824235.7465135357
[2025-11-25 00:34:15] 2025-11-24 23:33:01,065 | INFO     | intersect: -6223777404.8621235
[2025-11-25 00:34:15] 2025-11-24 23:33:01,066 | INFO     | chi2: 27.142987786921505
[2025-11-25 00:34:15] 2025-11-24 23:33:01,067 | INFO     | current chi2=27.142987786921505 (change=15.33652766607684 %)
[2025-11-25 00:34:15] 2025-11-24 23:33:01,067 | INFO     | left removable region: 10
[2025-11-25 00:34:15] 2025-11-24 23:33:01,069 | INFO     | sum of square deviations: 546616909794.2837
[2025-11-25 00:34:15] 2025-11-24 23:33:01,112 | INFO     | sum of deviations: 1991106697326.4946
[2025-11-25 00:34:15] 2025-11-24 23:33:01,112 | INFO     | mean x: 1763989861.5554636
[2025-11-25 00:34:15] 2025-11-24 23:33:01,113 | INFO     | mean y: 2845337.4180463576
[2025-11-25 00:34:15] 2025-11-24 23:33:01,113 | INFO     | intersect: -6422663944.175441
[2025-11-25 00:34:15] 2025-11-24 23:33:01,114 | INFO     | chi2: 19.213211647480268
[2025-11-25 00:34:15] 2025-11-24 23:33:01,114 | INFO     | current memory leak: 3.64 B/s (using 1208 data points, chi2=19.21)
[2025-11-25 00:34:15] 2025-11-24 23:33:01,117 | INFO     | could have reported an average CPU frequency of 1999 MHz (41 samples)
[2025-11-25 00:34:15] 2025-11-24 23:33:01,117 | INFO     | ..............................
[2025-11-25 00:34:15] 2025-11-24 23:33:01,117 | INFO     | . Timing measurements:
[2025-11-25 00:34:15] 2025-11-24 23:33:01,117 | INFO     | . get job = 0 s
[2025-11-25 00:34:15] 2025-11-24 23:33:01,117 | INFO     | . initial setup = 5 s
[2025-11-25 00:34:15] 2025-11-24 23:33:01,117 | INFO     | . payload setup = 156 s
[2025-11-25 00:34:15] 2025-11-24 23:33:01,117 | INFO     | . stage-in = 0 s
[2025-11-25 00:34:15] 2025-11-24 23:33:01,118 | INFO     | . payload execution = 74778 s
[2025-11-25 00:34:15] 2025-11-24 23:33:01,118 | INFO     | . stage-out = 9 s
[2025-11-25 00:34:15] 2025-11-24 23:33:01,118 | INFO     | . log creation = 2 s
[2025-11-25 00:34:15] 2025-11-24 23:33:01,118 | INFO     | ..............................
[2025-11-25 00:34:15] 2025-11-24 23:33:01,257 | INFO     | 
[2025-11-25 00:34:15] 2025-11-24 23:33:01,258 | INFO     | job summary report
[2025-11-25 00:34:15] 2025-11-24 23:33:01,258 | INFO     | --------------------------------------------------
[2025-11-25 00:34:15] 2025-11-24 23:33:01,258 | INFO     | PanDA job id: 6893868206
[2025-11-25 00:34:15] 2025-11-24 23:33:01,258 | INFO     | task id: 47523449
[2025-11-25 00:34:15] 2025-11-24 23:33:01,258 | INFO     | errors: (none)
[2025-11-25 00:34:15] 2025-11-24 23:33:01,258 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 00:34:15] 2025-11-24 23:33:01,258 | INFO     | pilot state: finished 
[2025-11-25 00:34:15] 2025-11-24 23:33:01,258 | INFO     | transexitcode: 0
[2025-11-25 00:34:15] 2025-11-24 23:33:01,259 | INFO     | exeerrorcode: 0
[2025-11-25 00:34:15] 2025-11-24 23:33:01,259 | INFO     | exeerrordiag: 
[2025-11-25 00:34:15] 2025-11-24 23:33:01,259 | INFO     | exitcode: 0
[2025-11-25 00:34:15] 2025-11-24 23:33:01,259 | INFO     | exitmsg: OK
[2025-11-25 00:34:15] 2025-11-24 23:33:01,259 | INFO     | cpuconsumptiontime: 339002 s
[2025-11-25 00:34:15] 2025-11-24 23:33:01,259 | INFO     | nevents: 1000
[2025-11-25 00:34:15] 2025-11-24 23:33:01,259 | INFO     | neventsw: 0
[2025-11-25 00:34:15] 2025-11-24 23:33:01,259 | INFO     | pid: 12128
[2025-11-25 00:34:15] 2025-11-24 23:33:01,259 | INFO     | pgrp: 12128
[2025-11-25 00:34:15] 2025-11-24 23:33:01,259 | INFO     | corecount: 8
[2025-11-25 00:34:15] 2025-11-24 23:33:01,259 | INFO     | event service: False
[2025-11-25 00:34:15] 2025-11-24 23:33:01,260 | INFO     | sizes: {0: 2298635, 1: 2298834, 12: 2298834, 23: 2298862, 33: 2298890, 44: 2298946, 55: 2299102, 66: 2299130, 76: 2299158, 87: 2299214, 95: 2299504, 98: 2299812, 7
[2025-11-25 00:34:15] 2025-11-24 23:33:01,260 | INFO     | --------------------------------------------------
[2025-11-25 00:34:15] 2025-11-24 23:33:01,260 | INFO     | 
[2025-11-25 00:34:15] 2025-11-24 23:33:01,260 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-11-25 00:34:15] 2025-11-24 23:33:02,017 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 00:34:15] 2025-11-24 23:33:02,017 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 00:34:15] 2025-11-24 23:33:02,017 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 00:34:15] 2025-11-24 23:33:02,018 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 00:34:15] 2025-11-24 23:33:02,018 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 00:34:15] 2025-11-24 23:33:02,018 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 00:34:15] 2025-11-24 23:33:02,018 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 00:34:15] 2025-11-24 23:33:02,018 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 00:34:15] 2025-11-24 23:33:02,018 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 00:34:15] 2025-11-24 23:33:02,018 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 00:34:15] 2025-11-24 23:33:02,018 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 00:34:15] 2025-11-24 23:33:02,018 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 00:34:15] 2025-11-24 23:33:02,018 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 00:34:15] 2025-11-24 23:33:02,018 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 00:34:15] 2025-11-24 23:33:02,019 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 00:34:15] 2025-11-24 23:33:02,019 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 00:34:15] 2025-11-24 23:33:02,019 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 00:34:15] 2025-11-24 23:33:02,019 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 00:34:15] 2025-11-24 23:33:02,019 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 00:34:15] 2025-11-24 23:33:02,019 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 00:34:15] 2025-11-24 23:33:02,019 | INFO     | job 6893868206 has completed (purged errors)
[2025-11-25 00:34:15] 2025-11-24 23:33:02,020 | INFO     | overall cleanup function is called
[2025-11-25 00:34:15] 2025-11-24 23:33:03,046 | INFO     | --- collectZombieJob: --- 10, [12128]
[2025-11-25 00:34:15] 2025-11-24 23:33:03,047 | INFO     | zombie collector waiting for pid 12128
[2025-11-25 00:34:15] 2025-11-24 23:33:03,047 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 00:34:15] 2025-11-24 23:33:03,047 | INFO     | collected zombie processes
[2025-11-25 00:34:15] 2025-11-24 23:33:03,047 | INFO     | will attempt to kill all subprocesses of pid=12128
[2025-11-25 00:34:15] 2025-11-24 23:33:03,140 | INFO     | process IDs to be killed: [12128] (in reverse order)
[2025-11-25 00:34:15] 2025-11-24 23:33:04,125 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 00:34:15] 2025-11-24 23:33:04,125 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 00:34:15] 2025-11-24 23:33:04,127 | INFO     | did not find any defunct processes belonging to 12128
[2025-11-25 00:34:15] 2025-11-24 23:33:04,129 | INFO     | did not find any defunct processes belonging to 12128
[2025-11-25 00:34:15] 2025-11-24 23:33:04,142 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 00:34:15] 2025-11-24 23:33:04,142 | INFO     | ready for new job
[2025-11-25 00:34:15] 2025-11-24 23:33:04,142 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 00:34:15] 2025-11-24 23:33:04,147 | INFO     | ***************************************
[2025-11-25 00:34:15] 2025-11-24 23:33:04,148 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 00:34:15] 2025-11-24 23:33:04,148 | INFO     | ***************************************
[2025-11-25 00:34:15] 2025-11-24 23:33:04,148 | INFO     | 
[2025-11-25 00:34:15] 2025-11-24 23:33:04,149 | INFO     | pilot is running in a VM
[2025-11-25 00:34:15] 2025-11-24 23:33:04,149 | INFO     | architecture information:
[2025-11-25 00:34:15] 2025-11-24 23:33:04,149 | INFO     | executing command: cat /etc/os-release
[2025-11-25 00:34:15] 2025-11-24 23:33:04,374 | INFO     | cat /etc/os-release:
[2025-11-25 00:34:15] NAME="CentOS Linux"
[2025-11-25 00:34:15] VERSION="7 (Core)"
[2025-11-25 00:34:15] ID="centos"
[2025-11-25 00:34:15] ID_LIKE="rhel fedora"
[2025-11-25 00:34:15] VERSION_ID="7"
[2025-11-25 00:34:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 00:34:15] ANSI_COLOR="0;31"
[2025-11-25 00:34:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 00:34:15] HOME_URL="https://www.centos.org/"
[2025-11-25 00:34:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 00:34:15] 
[2025-11-25 00:34:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 00:34:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 00:34:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 00:34:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 00:34:15] 
[2025-11-25 00:34:15] 2025-11-24 23:33:04,374 | INFO     | ***************************************
[2025-11-25 00:34:15] 2025-11-24 23:33:04,878 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-11-25 00:34:15] 2025-11-24 23:33:05,123 | INFO     | sufficient remaining disk space (492682870784 B)
[2025-11-25 00:34:15] 2025-11-24 23:33:05,123 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 00:34:15] 2025-11-24 23:33:05,124 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 00:34:15] 2025-11-24 23:33:05,124 | INFO     | update_server=False
[2025-11-25 00:34:15] 2025-11-24 23:33:05,124 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 00:34:15] 2025-11-24 23:33:05,126 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 00:34:15] 2025-11-24 23:33:05,293 | INFO     | all job control threads have been joined
[2025-11-25 00:34:15] 2025-11-24 23:33:05,640 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 00:34:15] 2025-11-24 23:33:05,876 | INFO     | all payload control threads have been joined
[2025-11-25 00:34:15] 2025-11-24 23:33:05,911 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 00:34:15] 2025-11-24 23:33:05,912 | INFO     | aborting loop
[2025-11-25 00:34:15] 2025-11-24 23:33:06,130 | INFO     | [job] retrieve thread has finished
[2025-11-25 00:34:15] 2025-11-24 23:33:06,151 | INFO     | all data control threads have been joined
[2025-11-25 00:34:15] 2025-11-24 23:33:06,274 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 00:34:15] 2025-11-24 23:33:06,299 | INFO     | [job] control thread has finished
[2025-11-25 00:34:15] 2025-11-24 23:33:06,408 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 00:34:15] 2025-11-24 23:33:06,804 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 00:34:15] 2025-11-24 23:33:06,834 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 00:34:15] 2025-11-24 23:33:06,882 | INFO     | [payload] control thread has finished
[2025-11-25 00:34:15] 2025-11-24 23:33:06,917 | INFO     | [job] job monitor thread has finished
[2025-11-25 00:34:15] 2025-11-24 23:33:06,921 | INFO     | [payload] failed_post thread has finished
[2025-11-25 00:34:15] 2025-11-24 23:33:07,154 | INFO     | [payload] validate_post thread has finished
[2025-11-25 00:34:15] 2025-11-24 23:33:07,158 | INFO     | [data] control thread has finished
[2025-11-25 00:34:15] 2025-11-24 23:33:07,255 | INFO     | [job] validate thread has finished
[2025-11-25 00:34:15] 2025-11-24 23:33:07,280 | INFO     | [job] queue monitor thread has finished
[2025-11-25 00:34:15] 2025-11-24 23:33:07,353 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 00:34:15] 2025-11-24 23:33:07,600 | INFO     | [data] copytool_in thread has finished
[2025-11-25 00:34:15] 2025-11-24 23:33:07,647 | INFO     | [data] copytool_out thread has finished
[2025-11-25 00:34:15] 2025-11-24 23:33:09,135 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 00:34:15] 2025-11-24 23:33:33,280 | INFO     | PID=5516 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-25 00:34:15] 2025-11-24 23:33:33,281 | INFO     | .. there are 2 such processes running
[2025-11-25 00:34:15] 2025-11-24 23:33:33,281 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 00:34:15] 2025-11-24 23:33:33,281 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 00:34:15] 2025-11-24 23:33:33,281 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 00:34:15] 2025-11-24 23:34:02,563 | INFO     | [monitor] cgroup control has ended
[2025-11-25 00:34:15] 2025-11-24 23:34:04,659 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140386306987840)>', '<ExcThread(monitor, started 140385393288960)>']
[2025-11-25 00:34:15] 2025-11-24 23:34:05,473 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 00:34:15] 2025-11-24 23:34:05,474 | INFO     | [monitor] control thread has ended
[2025-11-25 00:34:15] 2025-11-24 23:34:09,685 | INFO     | all workflow threads have been joined
[2025-11-25 00:34:15] 2025-11-24 23:34:09,686 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 00:34:15] 2025-11-24 23:34:09,686 | INFO     | traces error code: 0
[2025-11-25 00:34:15] 2025-11-24 23:34:09,686 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 00:34:15] 2025-11-24 23:34:10,288 [wrapper] ==== pilot stdout END ====
[2025-11-25 00:34:15] 2025-11-24 23:34:10,388 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 00:34:15] 2025-11-24 23:34:10,487 [wrapper] pilotpid: 5516
[2025-11-25 00:34:15] 2025-11-24 23:34:10,588 [wrapper] Pilot exit status: 0
[2025-11-25 00:34:15] 2025-11-24 23:34:11,066 [wrapper] pandaids: 6893868206
[2025-11-25 00:34:15] 2025-11-24 23:34:12,275 [wrapper] cleanup supervisor_pilot 20361 5517
[2025-11-25 00:34:15] 2025-11-24 23:34:12,399 [wrapper] Test setup, not cleaning
[2025-11-25 00:34:15] 2025-11-24 23:34:12,509 [wrapper] apfmon messages muted
[2025-11-25 00:34:15] 2025-11-24 23:34:12,605 [wrapper] ==== wrapper stdout END ====
[2025-11-25 00:34:15] 2025-11-24 23:34:12,709 [wrapper] ==== wrapper stderr END ====
[2025-11-25 00:34:15]  *** Error codes and diagnostics ***
[2025-11-25 00:34:15]     "exeErrorCode": 0,
[2025-11-25 00:34:15]     "exeErrorDiag": "",
[2025-11-25 00:34:15]     "pilotErrorCode": 0,
[2025-11-25 00:34:15]     "pilotErrorDiag": "",
[2025-11-25 00:34:15]  *** Listing of results directory ***
[2025-11-25 00:34:15] total 1330128
[2025-11-25 00:34:15] -rw-r--r--. 1 boinc boinc    576529 Nov 20 15:06 pilot3.tar.gz
[2025-11-25 00:34:15] -rw-r--r--. 1 boinc boinc      5112 Nov 20 15:36 queuedata.json
[2025-11-25 00:34:15] -rwx------. 1 boinc boinc     36292 Nov 20 15:37 runpilot2-wrapper.sh
[2025-11-25 00:34:15] -rw-r--r--. 1 boinc boinc       100 Nov 24 03:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 00:34:15] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 03:34 run_atlas
[2025-11-25 00:34:15] -rw-r--r--. 1 boinc boinc       105 Nov 24 03:34 job.xml
[2025-11-25 00:34:15] -rw-r--r--. 2 boinc boinc 408996032 Nov 24 03:34 EVNT.47493127._000629.pool.root.1
[2025-11-25 00:34:15] -rw-r--r--. 1 boinc boinc      6391 Nov 24 03:34 init_data.xml
[2025-11-25 00:34:15] -rw-r--r--. 2 boinc boinc     15847 Nov 24 03:34 start_atlas.sh
[2025-11-25 00:34:15] drwxrwx--x. 2 boinc boinc        68 Nov 24 03:34 shared
[2025-11-25 00:34:15] -rw-r--r--. 2 boinc boinc    590098 Nov 24 03:34 input.tar.gz
[2025-11-25 00:34:15] -rw-r--r--. 1 boinc boinc         0 Nov 24 03:34 boinc_lockfile
[2025-11-25 00:34:15] -rw-r--r--. 1 boinc boinc      2785 Nov 24 03:34 pandaJob.out
[2025-11-25 00:34:15] -rw-------. 1 boinc boinc    989786 Nov 24 03:38 agis_schedconf.cvmfs.json
[2025-11-25 00:34:15] drwx------. 5 boinc boinc      4096 Nov 24 03:38 pilot3
[2025-11-25 00:34:15] -rw-r--r--. 1 boinc boinc       533 Nov 25 00:00 boinc_task_state.xml
[2025-11-25 00:34:15] -rw-------. 1 boinc boinc 924337469 Nov 25 00:30 HITS.47523449._006290.pool.root.1
[2025-11-25 00:34:15] -rw-------. 1 boinc boinc      1033 Nov 25 00:30 memory_monitor_summary.json
[2025-11-25 00:34:15] -rw-------. 1 boinc boinc   1516227 Nov 25 00:31 agis_ddmendpoints.agis.ALL.json
[2025-11-25 00:34:15] -rw-------. 1 boinc boinc   2369851 Nov 25 00:31 log.47523449._006290.job.log.tgz.1
[2025-11-25 00:34:15] -rw-------. 1 boinc boinc        95 Nov 25 00:32 pilot_heartbeat.json
[2025-11-25 00:34:15] -rw-------. 1 boinc boinc      8631 Nov 25 00:33 heartbeat.json
[2025-11-25 00:34:15] -rw-r--r--. 1 boinc boinc        29 Nov 25 00:33 wrapper_checkpoint.txt
[2025-11-25 00:34:15] -rw-r--r--. 1 boinc boinc      8192 Nov 25 00:33 boinc_mmap_file
[2025-11-25 00:34:15] -rw-------. 1 boinc boinc      4883 Nov 25 00:34 pilotlog.txt
[2025-11-25 00:34:15] -rw-------. 1 boinc boinc  10038621 Nov 25 00:34 log.47523449._006290.job.log.1
[2025-11-25 00:34:15] -rw-------. 1 boinc boinc       353 Nov 25 00:34 output.list
[2025-11-25 00:34:15] -rw-r--r--. 1 boinc boinc       620 Nov 25 00:34 runtime_log
[2025-11-25 00:34:15] -rw-------. 1 boinc boinc  12431360 Nov 25 00:34 result.tar.gz
[2025-11-25 00:34:15] -rw-r--r--. 1 boinc boinc      8817 Nov 25 00:34 runtime_log.err
[2025-11-25 00:34:15] -rw-------. 1 boinc boinc       661 Nov 25 00:34 DQ6NDmByKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmq6HKDmFC6PEm.diag
[2025-11-25 00:34:15] -rw-r--r--. 1 boinc boinc     21502 Nov 25 00:34 stderr.txt
[2025-11-25 00:34:15] HITS file was successfully produced:
[2025-11-25 00:34:15] -rw-------. 1 boinc boinc 924337469 Nov 25 00:30 shared/HITS.pool.root.1
[2025-11-25 00:34:15]  *** Contents of shared directory: ***
[2025-11-25 00:34:15] total 1314824
[2025-11-25 00:34:15] -rw-r--r--. 2 boinc boinc 408996032 Nov 24 03:34 ATLAS.root_0
[2025-11-25 00:34:15] -rw-r--r--. 2 boinc boinc     15847 Nov 24 03:34 start_atlas.sh
[2025-11-25 00:34:15] -rw-r--r--. 2 boinc boinc    590098 Nov 24 03:34 input.tar.gz
[2025-11-25 00:34:15] -rw-------. 1 boinc boinc 924337469 Nov 25 00:30 HITS.pool.root.1
[2025-11-25 00:34:15] -rw-------. 1 boinc boinc  12431360 Nov 25 00:34 result.tar.gz
00:34:16 (1674): run_atlas exited; CPU time 339174.470835
00:34:16 (1674): called boinc_finish(0)

</stderr_txt>
]]>

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