Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:31:44 (2846028): wrapper (7.7.26015): starting
17:31:44 (2846028): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 17:31:44] Arguments: --nthreads 8
[2025-11-20 17:31:44] Threads: 8
[2025-11-20 17:31:44] Checking for CVMFS
[2025-11-20 17:31:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 17:31:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 17:31:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 17:31:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 17:31:45] 2.11.3.0 3082052 20528 228380 153103 0 411 43547394 45568000 10078 130560 0 150125457 99.819 81505615 21409 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-20 17:31:45] CVMFS is ok
[2025-11-20 17:31:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 17:31:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 17:31:45] Further information can be found at the LHC@home message board.
[2025-11-20 17:31:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 17:31:45] Checking for apptainer binary...
[2025-11-20 17:31:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 17:31:45] Running /usr/bin/apptainer --version
[2025-11-20 17:31:45] apptainer version 1.4.1-1.el9
[2025-11-20 17:31:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 17:31:45] wns0019.triumf.lcg
[2025-11-20 17:31:45] apptainer works
[2025-11-20 17:31:45] Set ATHENA_PROC_NUMBER=8
[2025-11-20 17:31:45] Set ATHENA_CORE_NUMBER=8
[2025-11-20 17:31:45] Starting ATLAS job with PandaID=6893881747
[2025-11-20 17:31:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 17:42:02]  *** The last 200 lines of the pilot log: ***
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | ..............................
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | . Timing measurements:
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | . get job = 0 s
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | . initial setup = 5 s
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | . payload setup = 34 s
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | . stage-in = 0 s
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | . payload execution = 326 s
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | . stage-out = 0 s
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | . log creation = 0 s
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | ..............................
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 17:42:02] 2025-11-21 01:41:29,388 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893881747/pilotlog.txt
[2025-11-20 17:42:02] 2025-11-21 01:41:29,398 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-20 17:42:02] - Log from pilotlog.txt -
[2025-11-20 17:42:02] 2025-11-21 01:41:29,384 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893881747/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 17:42:02] 2025-11-21 01:41:29,385 | INFO     | extracted standard info from prmon json
[2025-11-20 17:42:02] 2025-11-21 01:41:29,385 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 17:42:02] 2025-11-21 01:41:29,385 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 17:42:02] 2025-11-21 01:41:29,385 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 17:42:02] 2025-11-21 01:41:29,385 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 17:42:02] 2025-11-21 01:41:29,386 | WARNING  | wrong length of table data, x=[1763688850.0, 1763688911.0, 1763688972.0, 1763689033.0, 1763689094.0, 1763689155.0], y=[941.0, 510741.0, 615338.0, 766564.0, 875492.
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | ..............................
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | . Timing measurements:
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | . get job = 0 s
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | . initial setup = 5 s
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | . payload setup = 34 s
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | . stage-in = 0 s
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | . payload execution = 326 s
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | . stage-out = 0 s
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | . log creation = 0 s
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | ..............................
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 17:42:02] 2025-11-21 01:41:29,388 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893881747/pilotlog.txt
[2025-11-20 17:42:02] 2025-11-21 01:41:29,399 | WARNING  | 
[2025-11-20 17:42:02] [begin log extracts]
[2025-11-20 17:42:02] - Log from pilotlog.txt -
[2025-11-20 17:42:02] 2025-11-21 01:41:29,384 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893881747/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 17:42:02] 2025-11-21 01:41:29,385 | INFO     | extracted standard info from prmon json
[2025-11-20 17:42:02] 2025-11-21 01:41:29,385 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 17:42:02] 2025-11-21 01:41:29,385 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 17:42:02] 2025-11-21 01:41:29,385 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 17:42:02] 2025-11-21 01:41:29,385 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 17:42:02] 2025-11-21 01:41:29,386 | WARNING  | wrong length of table data, x=[1763688850.0, 1763688911.0, 1763688972.0, 1763689033.0, 1763689094.0, 1763689155.0], y=[941.0, 510741.0, 615338.0, 766564.0, 875492.
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | ..............................
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | . Timing measurements:
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | . get job = 0 s
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | . initial setup = 5 s
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | . payload setup = 34 s
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | . stage-in = 0 s
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | . payload execution = 326 s
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | . stage-out = 0 s
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | . log creation = 0 s
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | ..............................
[2025-11-20 17:42:02] 2025-11-21 01:41:29,387 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 17:42:02] 2025-11-21 01:41:29,388 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893881747/pilotlog.txt
[2025-11-20 17:42:02] [end log extracts]
[2025-11-20 17:42:02] 2025-11-21 01:41:29,399 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-20 17:42:02] 2025-11-21 01:41:29,399 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-20 17:42:02] 2025-11-21 01:41:29,466 | INFO     | 
[2025-11-20 17:42:02] 2025-11-21 01:41:29,466 | INFO     | job summary report
[2025-11-20 17:42:02] 2025-11-21 01:41:29,466 | INFO     | --------------------------------------------------
[2025-11-20 17:42:02] 2025-11-21 01:41:29,466 | INFO     | PanDA job id: 6893881747
[2025-11-20 17:42:02] 2025-11-21 01:41:29,466 | INFO     | task id: 47523449
[2025-11-20 17:42:02] 2025-11-21 01:41:29,467 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-20 17:39:13,348 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-20 17:42:02] 2025-11-21 01:41:29,467 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-20 17:42:02] 2025-11-21 01:41:29,467 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 17:42:02] 2025-11-21 01:41:29,467 | INFO     | pilot state: failed 
[2025-11-20 17:42:02] 2025-11-21 01:41:29,467 | INFO     | transexitcode: 65
[2025-11-20 17:42:02] 2025-11-21 01:41:29,467 | INFO     | exeerrorcode: 65
[2025-11-20 17:42:02] 2025-11-21 01:41:29,467 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-20 17:42:02] 2025-11-21 01:41:29,467 | INFO     | exitcode: 65
[2025-11-20 17:42:02] 2025-11-21 01:41:29,467 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-20 17:42:02] 2025-11-21 01:41:29,467 | INFO     | cpuconsumptiontime: 51 s
[2025-11-20 17:42:02] 2025-11-21 01:41:29,467 | INFO     | nevents: 0
[2025-11-20 17:42:02] 2025-11-21 01:41:29,467 | INFO     | neventsw: 0
[2025-11-20 17:42:02] 2025-11-21 01:41:29,467 | INFO     | pid: 2857299
[2025-11-20 17:42:02] 2025-11-21 01:41:29,467 | INFO     | pgrp: 2857299
[2025-11-20 17:42:02] 2025-11-21 01:41:29,467 | INFO     | corecount: 8
[2025-11-20 17:42:02] 2025-11-21 01:41:29,468 | INFO     | event service: False
[2025-11-20 17:42:02] 2025-11-21 01:41:29,468 | INFO     | sizes: {0: 2298582, 1: 2298610, 2: 2298809, 13: 2298809, 16: 2299127, 23: 2299155, 364: 2324823, 365: 2329169, 493: 2329307}
[2025-11-20 17:42:02] 2025-11-21 01:41:29,468 | INFO     | --------------------------------------------------
[2025-11-20 17:42:02] 2025-11-21 01:41:29,468 | INFO     | 
[2025-11-20 17:42:02] 2025-11-21 01:41:29,468 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-20 17:42:02] 2025-11-21 01:41:29,486 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 17:42:02] 2025-11-21 01:41:29,486 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 17:42:02] 2025-11-21 01:41:29,486 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 17:42:02] 2025-11-21 01:41:29,486 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 17:42:02] 2025-11-21 01:41:29,486 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 17:42:02] 2025-11-21 01:41:29,486 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 17:42:02] 2025-11-21 01:41:29,486 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 17:42:02] 2025-11-21 01:41:29,487 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 17:42:02] 2025-11-21 01:41:29,487 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 17:42:02] 2025-11-21 01:41:29,487 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 17:42:02] 2025-11-21 01:41:29,487 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 17:42:02] 2025-11-21 01:41:29,487 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 17:42:02] 2025-11-21 01:41:29,487 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 17:42:02] 2025-11-21 01:41:29,487 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 17:42:02] 2025-11-21 01:41:29,487 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 17:42:02] 2025-11-21 01:41:29,487 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 17:42:02] 2025-11-21 01:41:29,487 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 17:42:02] 2025-11-21 01:41:29,487 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 17:42:02] 2025-11-21 01:41:29,487 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 17:42:02] 2025-11-21 01:41:29,487 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 17:42:02] 2025-11-21 01:41:29,488 | INFO     | job 6893881747 has completed (purged errors)
[2025-11-20 17:42:02] 2025-11-21 01:41:29,488 | INFO     | overall cleanup function is called
[2025-11-20 17:42:02] 2025-11-21 01:41:30,496 | INFO     | --- collectZombieJob: --- 10, [2857299]
[2025-11-20 17:42:02] 2025-11-21 01:41:30,496 | INFO     | zombie collector waiting for pid 2857299
[2025-11-20 17:42:02] 2025-11-21 01:41:30,496 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 17:42:02] 2025-11-21 01:41:30,496 | INFO     | collected zombie processes
[2025-11-20 17:42:02] 2025-11-21 01:41:30,496 | INFO     | will attempt to kill all subprocesses of pid=2857299
[2025-11-20 17:42:02] 2025-11-21 01:41:31,111 | INFO     | process IDs to be killed: [2857299] (in reverse order)
[2025-11-20 17:42:02] 2025-11-21 01:41:31,422 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 17:42:02] 2025-11-21 01:41:31,422 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 17:42:02] 2025-11-21 01:41:31,438 | INFO     | did not find any defunct processes belonging to 2857299
[2025-11-20 17:42:02] 2025-11-21 01:41:31,445 | INFO     | did not find any defunct processes belonging to 2857299
[2025-11-20 17:42:02] 2025-11-21 01:41:31,446 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 17:42:02] 2025-11-21 01:41:31,446 | INFO     | ready for new job
[2025-11-20 17:42:02] 2025-11-21 01:41:31,446 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 17:42:02] 2025-11-21 01:41:31,455 | INFO     | ***************************************
[2025-11-20 17:42:02] 2025-11-21 01:41:31,456 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 17:42:02] 2025-11-21 01:41:31,456 | INFO     | ***************************************
[2025-11-20 17:42:02] 2025-11-21 01:41:31,456 | INFO     | 
[2025-11-20 17:42:02] 2025-11-21 01:41:31,457 | INFO     | architecture information:
[2025-11-20 17:42:02] 2025-11-21 01:41:31,475 | INFO     | executing command: cat /etc/os-release
[2025-11-20 17:42:02] 2025-11-21 01:41:31,558 | INFO     | cat /etc/os-release:
[2025-11-20 17:42:02] NAME="CentOS Linux"
[2025-11-20 17:42:02] VERSION="7 (Core)"
[2025-11-20 17:42:02] ID="centos"
[2025-11-20 17:42:02] ID_LIKE="rhel fedora"
[2025-11-20 17:42:02] VERSION_ID="7"
[2025-11-20 17:42:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 17:42:02] ANSI_COLOR="0;31"
[2025-11-20 17:42:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 17:42:02] HOME_URL="https://www.centos.org/"
[2025-11-20 17:42:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 17:42:02] 
[2025-11-20 17:42:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 17:42:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 17:42:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 17:42:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 17:42:02] 
[2025-11-20 17:42:02] 2025-11-21 01:41:31,558 | INFO     | ***************************************
[2025-11-20 17:42:02] 2025-11-21 01:41:32,075 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-20 17:42:02] 2025-11-21 01:41:32,179 | INFO     | sufficient remaining disk space (1415626883072 B)
[2025-11-20 17:42:02] 2025-11-21 01:41:32,179 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 17:42:02] 2025-11-21 01:41:32,180 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 17:42:02] 2025-11-21 01:41:32,180 | INFO     | update_server=False
[2025-11-20 17:42:02] 2025-11-21 01:41:32,180 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 17:42:02] 2025-11-21 01:41:32,181 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 17:42:02] 2025-11-21 01:41:32,621 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-20 17:42:02] 2025-11-21 01:41:32,621 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-20 17:42:02] 2025-11-21 01:41:32,621 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 17:42:02] 2025-11-21 01:41:32,621 | INFO     | will abort loop
[2025-11-20 17:42:02] 2025-11-21 01:41:32,837 | INFO     | all job control threads have been joined
[2025-11-20 17:42:02] 2025-11-21 01:41:33,066 | INFO     | all data control threads have been joined
[2025-11-20 17:42:02] 2025-11-21 01:41:33,186 | INFO     | [job] retrieve thread has finished
[2025-11-20 17:42:02] 2025-11-21 01:41:33,461 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 17:42:02] 2025-11-21 01:41:33,478 | INFO     | all payload control threads have been joined
[2025-11-20 17:42:02] 2025-11-21 01:41:33,494 | INFO     | [payload] failed_post thread has finished
[2025-11-20 17:42:02] 2025-11-21 01:41:33,554 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 17:42:02] 2025-11-21 01:41:33,572 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 17:42:02] 2025-11-21 01:41:33,627 | INFO     | [job] job monitor thread has finished
[2025-11-20 17:42:02] 2025-11-21 01:41:33,843 | INFO     | [job] control thread has finished
[2025-11-20 17:42:02] 2025-11-21 01:41:33,899 | INFO     | [payload] validate_post thread has finished
[2025-11-20 17:42:02] 2025-11-21 01:41:33,972 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 17:42:02] 2025-11-21 01:41:34,084 | INFO     | [data] control thread has finished
[2025-11-20 17:42:02] 2025-11-21 01:41:34,091 | INFO     | [job] validate thread has finished
[2025-11-20 17:42:02] 2025-11-21 01:41:34,188 | INFO     | [data] copytool_out thread has finished
[2025-11-20 17:42:02] 2025-11-21 01:41:34,344 | INFO     | [data] copytool_in thread has finished
[2025-11-20 17:42:02] 2025-11-21 01:41:34,483 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 17:42:02] 2025-11-21 01:41:34,483 | INFO     | [payload] control thread has finished
[2025-11-20 17:42:02] 2025-11-21 01:41:34,616 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 17:42:02] 2025-11-21 01:41:35,489 | INFO     | [job] queue monitor thread has finished
[2025-11-20 17:42:02] 2025-11-21 01:41:37,142 | INFO     | [monitor] cgroup control has ended
[2025-11-20 17:42:02] 2025-11-21 01:41:37,470 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 17:42:02] 2025-11-21 01:41:38,668 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140203853821760)>', '<ExcThread(monitor, started 140203461158656)>']
[2025-11-20 17:42:02] 2025-11-21 01:41:43,694 | INFO     | all workflow threads have been joined
[2025-11-20 17:42:02] 2025-11-21 01:41:43,694 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 17:42:02] 2025-11-21 01:41:43,694 | INFO     | traces error code: 0
[2025-11-20 17:42:02] 2025-11-21 01:41:43,694 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 17:42:02] 2025-11-21 01:42:02,113 | INFO     | PID=2849806 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 17:42:02] 2025-11-21 01:42:02,114 | INFO     | .. there are 18 such processes running
[2025-11-20 17:42:02] 2025-11-21 01:42:02,114 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 17:42:02] 2025-11-21 01:42:02,114 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 17:42:02] 2025-11-21 01:42:02,115 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 17:42:02] 2025-11-21 01:42:02,115 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 17:42:02] 2025-11-21 01:42:02,115 | INFO     | [monitor] control thread has ended
[2025-11-20 17:42:02] 2025-11-21 01:42:02,241 [wrapper] ==== pilot stdout END ====
[2025-11-20 17:42:02] 2025-11-21 01:42:02,248 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 17:42:02] 2025-11-21 01:42:02,253 [wrapper] pilotpid: 2849806
[2025-11-20 17:42:02] 2025-11-21 01:42:02,257 [wrapper] Pilot exit status: 0
[2025-11-20 17:42:02] 2025-11-21 01:42:02,301 [wrapper] pandaids: 6893881747
[2025-11-20 17:42:02] 2025-11-21 01:42:02,342 [wrapper] cleanup supervisor_pilot 2849812 2849807
[2025-11-20 17:42:02] 2025-11-21 01:42:02,345 [wrapper] Test setup, not cleaning
[2025-11-20 17:42:02] 2025-11-21 01:42:02,347 [wrapper] apfmon messages muted
[2025-11-20 17:42:02] 2025-11-21 01:42:02,351 [wrapper] ==== wrapper stdout END ====
[2025-11-20 17:42:02] 2025-11-21 01:42:02,355 [wrapper] ==== wrapper stderr END ====
[2025-11-20 17:42:02]  *** Error codes and diagnostics ***
[2025-11-20 17:42:02]     "exeErrorCode": 65,
[2025-11-20 17:42:02]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-20 17:42:02]     "pilotErrorCode": 1305,
[2025-11-20 17:42:02]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-20 17:42:02]  *** Listing of results directory ***
[2025-11-20 17:42:02] total 405468
[2025-11-20 17:42:02] -rw-r--r--. 1 boinc boinc    576529 Nov 20 12:07 pilot3.tar.gz
[2025-11-20 17:42:02] -rw-r--r--. 1 boinc boinc      5112 Nov 20 12:10 queuedata.json
[2025-11-20 17:42:02] -rwx------. 1 boinc boinc     36292 Nov 20 12:12 runpilot2-wrapper.sh
[2025-11-20 17:42:02] -rw-r--r--. 1 boinc boinc       100 Nov 20 17:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 17:42:02] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 17:31 run_atlas
[2025-11-20 17:42:02] -rw-r--r--. 1 boinc boinc       105 Nov 20 17:31 job.xml
[2025-11-20 17:42:02] -rw-r--r--. 2 boinc boinc 410917046 Nov 20 17:31 EVNT.47493127._000870.pool.root.1
[2025-11-20 17:42:02] drwxrwx--x. 2 boinc boinc      4096 Nov 20 17:31 shared
[2025-11-20 17:42:02] -rw-r--r--. 2 boinc boinc    590104 Nov 20 17:31 input.tar.gz
[2025-11-20 17:42:02] -rw-r--r--. 1 boinc boinc      6445 Nov 20 17:31 init_data.xml
[2025-11-20 17:42:02] -rw-r--r--. 2 boinc boinc     15847 Nov 20 17:31 start_atlas.sh
[2025-11-20 17:42:02] -rw-r--r--. 1 boinc boinc         0 Nov 20 17:31 boinc_lockfile
[2025-11-20 17:42:02] -rw-r--r--. 1 boinc boinc      2785 Nov 20 17:31 pandaJob.out
[2025-11-20 17:42:02] -rw-------. 1 boinc boinc    989817 Nov 20 17:32 agis_schedconf.cvmfs.json
[2025-11-20 17:42:02] -rw-------. 1 boinc boinc   1526164 Nov 20 17:32 agis_ddmendpoints.agis.ALL.json
[2025-11-20 17:42:02] drwx------. 5 boinc boinc      4096 Nov 20 17:32 pilot3
[2025-11-20 17:42:02] -rw-r--r--. 1 boinc boinc       524 Nov 20 17:38 boinc_task_state.xml
[2025-11-20 17:42:02] -rw-------. 1 boinc boinc       995 Nov 20 17:39 memory_monitor_summary.json
[2025-11-20 17:42:02] -rw-------. 1 boinc boinc     52747 Nov 20 17:39 log.47523449._008699.job.log.tgz.1
[2025-11-20 17:42:02] -rw-------. 1 boinc boinc     10332 Nov 20 17:41 heartbeat.json
[2025-11-20 17:42:02] -rw-r--r--. 1 boinc boinc      8192 Nov 20 17:41 boinc_mmap_file
[2025-11-20 17:42:02] -rw-r--r--. 1 boinc boinc        23 Nov 20 17:42 wrapper_checkpoint.txt
[2025-11-20 17:42:02] -rw-------. 1 boinc boinc        95 Nov 20 17:42 pilot_heartbeat.json
[2025-11-20 17:42:02] -rw-------. 1 boinc boinc       823 Nov 20 17:42 pilotlog.txt
[2025-11-20 17:42:02] -rw-------. 1 boinc boinc    132589 Nov 20 17:42 log.47523449._008699.job.log.1
[2025-11-20 17:42:02] -rw-------. 1 boinc boinc       186 Nov 20 17:42 output.list
[2025-11-20 17:42:02] -rw-r--r--. 1 boinc boinc       620 Nov 20 17:42 runtime_log
[2025-11-20 17:42:02] -rw-------. 1 boinc boinc    204800 Nov 20 17:42 result.tar.gz
[2025-11-20 17:42:02] -rw-------. 1 boinc boinc       647 Nov 20 17:42 YgcNDmkBQg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm83GKDm4dxlhm.diag
[2025-11-20 17:42:02] -rw-r--r--. 1 boinc boinc      8634 Nov 20 17:42 runtime_log.err
[2025-11-20 17:42:02] -rw-r--r--. 1 boinc boinc     22560 Nov 20 17:42 stderr.txt
[2025-11-20 17:42:02] No HITS result produced
[2025-11-20 17:42:02]  *** Contents of shared directory: ***
[2025-11-20 17:42:02] total 402088
[2025-11-20 17:42:02] -rw-r--r--. 2 boinc boinc 410917046 Nov 20 17:31 ATLAS.root_0
[2025-11-20 17:42:02] -rw-r--r--. 2 boinc boinc    590104 Nov 20 17:31 input.tar.gz
[2025-11-20 17:42:02] -rw-r--r--. 2 boinc boinc     15847 Nov 20 17:31 start_atlas.sh
[2025-11-20 17:42:02] -rw-------. 1 boinc boinc    204800 Nov 20 17:42 result.tar.gz
17:42:04 (2846028): run_atlas exited; CPU time 58.929988
17:42:04 (2846028): called boinc_finish(0)

</stderr_txt>
]]>

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