Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:43:39 (2264722): wrapper (7.7.26015): starting
20:43:39 (2264722): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 20:43:39] Arguments: --nthreads 4
[2025-11-21 20:43:39] Threads: 4
[2025-11-21 20:43:39] Checking for CVMFS
[2025-11-21 20:43:39] No cvmfs_config command found, will try listing directly
[2025-11-21 20:43:39] CVMFS is ok
[2025-11-21 20:43:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 20:43:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 20:43:39] Further information can be found at the LHC@home message board.
[2025-11-21 20:43:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 20:43:39] Checking for apptainer binary...
[2025-11-21 20:43:39] which: no apptainer in ((null))
[2025-11-21 20:43:39] apptainer is not installed, using version from CVMFS
[2025-11-21 20:43:39] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 20:43:40] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot112/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2025-11-21 20:43:40] apptainer works
[2025-11-21 20:43:40] Set ATHENA_PROC_NUMBER=4
[2025-11-21 20:43:40] Set ATHENA_CORE_NUMBER=4
[2025-11-21 20:43:40] Starting ATLAS job with PandaID=6893871024
[2025-11-21 20:43:40] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot112/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 12:05:47]  *** The last 200 lines of the pilot log: ***
[2025-11-22 12:05:47] 2025-11-22 11:00:29,444 | INFO     | PID=2271067 has CPU usage=28.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-22 12:05:47] 2025-11-22 11:00:29,444 | INFO     | .. there are 8 such processes running
[2025-11-22 12:05:47] 2025-11-22 11:00:30,268 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 12:05:47] 2025-11-22 11:00:30,290 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2695.7166640624987
[2025-11-22 12:05:47] 2025-11-22 11:00:30,313 | INFO     | using path: /scratch/boinc/var/slot112/slots/0/PanDA_Pilot-6893871024/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 12:05:47] 2025-11-22 11:00:30,314 | INFO     | extracted standard info from prmon json
[2025-11-22 12:05:47] 2025-11-22 11:00:30,314 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 12:05:47] 2025-11-22 11:00:30,314 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 12:05:47] 2025-11-22 11:00:30,328 | INFO     | fitting pss+swap vs Time
[2025-11-22 12:05:47] 2025-11-22 11:00:30,329 | INFO     | sum of square deviations: 226804810650.0
[2025-11-22 12:05:47] 2025-11-22 11:00:30,346 | INFO     | sum of deviations: 732835001855.0
[2025-11-22 12:05:47] 2025-11-22 11:00:30,347 | INFO     | mean x: 1763781720.0
[2025-11-22 12:05:47] 2025-11-22 11:00:30,347 | INFO     | mean y: 2285087.729189789
[2025-11-22 12:05:47] 2025-11-22 11:00:30,347 | INFO     | intersect: -5696716517.852562
[2025-11-22 12:05:47] 2025-11-22 11:00:30,348 | INFO     | chi2: 3.6069721809712783
[2025-11-22 12:05:47] 2025-11-22 11:00:30,349 | INFO     | sum of square deviations: 223049837920.0
[2025-11-22 12:05:47] 2025-11-22 11:00:30,365 | INFO     | sum of deviations: 894191285116.5004
[2025-11-22 12:05:47] 2025-11-22 11:00:30,365 | INFO     | mean x: 1763781567.5
[2025-11-22 12:05:47] 2025-11-22 11:00:30,365 | INFO     | mean y: 2291633.5993303573
[2025-11-22 12:05:47] 2025-11-22 11:00:30,365 | INFO     | intersect: -7068585983.775539
[2025-11-22 12:05:47] 2025-11-22 11:00:30,366 | INFO     | chi2: 1.903603608523805
[2025-11-22 12:05:47] 2025-11-22 11:00:30,366 | INFO     | current chi2=1.903603608523805 (change=47.22433351256935 %)
[2025-11-22 12:05:47] 2025-11-22 11:00:30,367 | INFO     | sum of square deviations: 219336540390.0
[2025-11-22 12:05:47] 2025-11-22 11:00:30,384 | INFO     | sum of deviations: 903257079649.0
[2025-11-22 12:05:47] 2025-11-22 11:00:30,385 | INFO     | mean x: 1763781415.0
[2025-11-22 12:05:47] 2025-11-22 11:00:30,385 | INFO     | mean y: 2292002.358024691
[2025-11-22 12:05:47] 2025-11-22 11:00:30,385 | INFO     | intersect: -7261194725.477297
[2025-11-22 12:05:47] 2025-11-22 11:00:30,386 | INFO     | chi2: 1.830056712775554
[2025-11-22 12:05:47] 2025-11-22 11:00:30,386 | INFO     | current chi2=1.830056712775554 (change=3.8635614798652704 %)
[2025-11-22 12:05:47] 2025-11-22 11:00:30,386 | INFO     | right removable region: 890
[2025-11-22 12:05:47] 2025-11-22 11:00:30,387 | INFO     | sum of square deviations: 223049837920.0
[2025-11-22 12:05:47] 2025-11-22 11:00:30,404 | INFO     | sum of deviations: 574772835225.5006
[2025-11-22 12:05:47] 2025-11-22 11:00:30,404 | INFO     | mean x: 1763781872.5
[2025-11-22 12:05:47] 2025-11-22 11:00:30,404 | INFO     | mean y: 2291494.152901786
[2025-11-22 12:05:47] 2025-11-22 11:00:30,404 | INFO     | intersect: -4542764072.934181
[2025-11-22 12:05:47] 2025-11-22 11:00:30,405 | INFO     | chi2: 1.8581611584952886
[2025-11-22 12:05:47] 2025-11-22 11:00:30,405 | INFO     | current chi2=1.8581611584952886 (change=48.48418381771587 %)
[2025-11-22 12:05:47] 2025-11-22 11:00:30,406 | INFO     | sum of square deviations: 219336540390.0
[2025-11-22 12:05:47] 2025-11-22 11:00:30,423 | INFO     | sum of deviations: 562157346688.0001
[2025-11-22 12:05:47] 2025-11-22 11:00:30,423 | INFO     | mean x: 1763782025.0
[2025-11-22 12:05:47] 2025-11-22 11:00:30,424 | INFO     | mean y: 2292011.781144781
[2025-11-22 12:05:47] 2025-11-22 11:00:30,424 | INFO     | intersect: -4518263576.206936
[2025-11-22 12:05:47] 2025-11-22 11:00:30,425 | INFO     | chi2: 1.8573021356592698
[2025-11-22 12:05:47] 2025-11-22 11:00:30,425 | INFO     | current chi2=1.8573021356592698 (change=0.04622972728126665 %)
[2025-11-22 12:05:47] 2025-11-22 11:00:30,425 | INFO     | left removable region: 20
[2025-11-22 12:05:47] 2025-11-22 11:00:30,426 | INFO     | sum of square deviations: 204190535477.5
[2025-11-22 12:05:47] 2025-11-22 11:00:30,442 | INFO     | sum of deviations: 723402595187.4994
[2025-11-22 12:05:47] 2025-11-22 11:00:30,443 | INFO     | mean x: 1763781994.5
[2025-11-22 12:05:47] 2025-11-22 11:00:30,443 | INFO     | mean y: 2299267.888505747
[2025-11-22 12:05:47] 2025-11-22 11:00:30,443 | INFO     | intersect: -6246396192.861091
[2025-11-22 12:05:47] 2025-11-22 11:00:30,444 | INFO     | chi2: 0.06088806763121703
[2025-11-22 12:05:47] 2025-11-22 11:00:30,444 | INFO     | current memory leak: 3.54 B/s (using 870 data points, chi2=0.06)
[2025-11-22 12:05:47] 2025-11-22 11:00:30,445 | INFO     | time since job start (54996s) is within the limit (172800.0s)
[2025-11-22 12:05:47] 2025-11-22 11:00:30,445 | INFO     | could have reported an average CPU frequency of 2675 MHz (34 samples)
[2025-11-22 12:05:47] 2025-11-22 11:00:30,446 | INFO     | ..............................
[2025-11-22 12:05:47] 2025-11-22 11:00:30,446 | INFO     | . Timing measurements:
[2025-11-22 12:05:47] 2025-11-22 11:00:30,446 | INFO     | . get job = 0 s
[2025-11-22 12:05:47] 2025-11-22 11:00:30,446 | INFO     | . initial setup = 1 s
[2025-11-22 12:05:47] 2025-11-22 11:00:30,446 | INFO     | . payload setup = 9 s
[2025-11-22 12:05:47] 2025-11-22 11:00:30,446 | INFO     | . stage-in = 0 s
[2025-11-22 12:05:47] 2025-11-22 11:00:30,446 | INFO     | . payload execution = 54952 s
[2025-11-22 12:05:47] 2025-11-22 11:00:30,446 | INFO     | . stage-out = 2 s
[2025-11-22 12:05:47] 2025-11-22 11:00:30,446 | INFO     | . log creation = 0 s
[2025-11-22 12:05:47] 2025-11-22 11:00:30,446 | INFO     | ..............................
[2025-11-22 12:05:47] 2025-11-22 11:00:30,549 | INFO     | 
[2025-11-22 12:05:47] 2025-11-22 11:00:30,549 | INFO     | job summary report
[2025-11-22 12:05:47] 2025-11-22 11:00:30,550 | INFO     | --------------------------------------------------
[2025-11-22 12:05:47] 2025-11-22 11:00:30,550 | INFO     | PanDA job id: 6893871024
[2025-11-22 12:05:47] 2025-11-22 11:00:30,550 | INFO     | task id: 47523449
[2025-11-22 12:05:47] 2025-11-22 11:00:30,550 | INFO     | errors: (none)
[2025-11-22 12:05:47] 2025-11-22 11:00:30,550 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 12:05:47] 2025-11-22 11:00:30,550 | INFO     | pilot state: finished 
[2025-11-22 12:05:47] 2025-11-22 11:00:30,550 | INFO     | transexitcode: 0
[2025-11-22 12:05:47] 2025-11-22 11:00:30,550 | INFO     | exeerrorcode: 0
[2025-11-22 12:05:47] 2025-11-22 11:00:30,550 | INFO     | exeerrordiag: 
[2025-11-22 12:05:47] 2025-11-22 11:00:30,550 | INFO     | exitcode: 0
[2025-11-22 12:05:47] 2025-11-22 11:00:30,550 | INFO     | exitmsg: OK
[2025-11-22 12:05:47] 2025-11-22 11:00:30,551 | INFO     | cpuconsumptiontime: 217756 s
[2025-11-22 12:05:47] 2025-11-22 11:00:30,551 | INFO     | nevents: 1000
[2025-11-22 12:05:47] 2025-11-22 11:00:30,551 | INFO     | neventsw: 0
[2025-11-22 12:05:47] 2025-11-22 11:00:30,551 | INFO     | pid: 2278951
[2025-11-22 12:05:47] 2025-11-22 11:00:30,551 | INFO     | pgrp: 2278951
[2025-11-22 12:05:47] 2025-11-22 11:00:30,551 | INFO     | corecount: 4
[2025-11-22 12:05:47] 2025-11-22 11:00:30,551 | INFO     | event service: False
[2025-11-22 12:05:47] 2025-11-22 11:00:30,551 | INFO     | sizes: {0: 2298590, 1: 2298789, 7: 2299051, 12: 2299079, 54965: 2351672, 54968: 2360874, 54978: 2361064}
[2025-11-22 12:05:47] 2025-11-22 11:00:30,551 | INFO     | --------------------------------------------------
[2025-11-22 12:05:47] 2025-11-22 11:00:30,551 | INFO     | 
[2025-11-22 12:05:47] 2025-11-22 11:00:30,552 | INFO     | executing command: ls -lF /scratch/boinc/var/slot112/slots/0
[2025-11-22 12:05:47] 2025-11-22 11:00:30,583 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 12:05:47] 2025-11-22 11:00:30,583 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 12:05:47] 2025-11-22 11:00:30,583 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 12:05:47] 2025-11-22 11:00:30,583 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 12:05:47] 2025-11-22 11:00:30,583 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 12:05:47] 2025-11-22 11:00:30,583 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 12:05:47] 2025-11-22 11:00:30,583 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 12:05:47] 2025-11-22 11:00:30,584 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 12:05:47] 2025-11-22 11:00:30,584 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 12:05:47] 2025-11-22 11:00:30,584 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 12:05:47] 2025-11-22 11:00:30,584 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 12:05:47] 2025-11-22 11:00:30,584 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 12:05:47] 2025-11-22 11:00:30,584 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 12:05:47] 2025-11-22 11:00:30,584 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 12:05:47] 2025-11-22 11:00:30,584 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 12:05:47] 2025-11-22 11:00:30,584 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 12:05:47] 2025-11-22 11:00:30,584 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 12:05:47] 2025-11-22 11:00:30,584 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 12:05:47] 2025-11-22 11:00:30,584 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 12:05:47] 2025-11-22 11:00:30,584 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 12:05:47] 2025-11-22 11:00:30,585 | INFO     | job 6893871024 has completed (purged errors)
[2025-11-22 12:05:47] 2025-11-22 11:00:30,585 | INFO     | overall cleanup function is called
[2025-11-22 12:05:47] 2025-11-22 11:00:31,600 | INFO     | --- collectZombieJob: --- 10, [2278951]
[2025-11-22 12:05:47] 2025-11-22 11:00:31,604 | INFO     | zombie collector waiting for pid 2278951
[2025-11-22 12:05:47] 2025-11-22 11:00:31,604 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 12:05:47] 2025-11-22 11:00:31,604 | INFO     | collected zombie processes
[2025-11-22 12:05:47] 2025-11-22 11:00:31,604 | INFO     | will attempt to kill all subprocesses of pid=2278951
[2025-11-22 12:05:47] 2025-11-22 11:00:32,372 | INFO     | process IDs to be killed: [2278951] (in reverse order)
[2025-11-22 12:05:47] 2025-11-22 11:00:32,631 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 12:05:47] 2025-11-22 11:00:32,632 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 12:05:47] 2025-11-22 11:00:32,665 | INFO     | did not find any defunct processes belonging to 2278951
[2025-11-22 12:05:47] 2025-11-22 11:00:32,698 | INFO     | did not find any defunct processes belonging to 2278951
[2025-11-22 12:05:47] 2025-11-22 11:00:32,700 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 12:05:47] 2025-11-22 11:00:32,700 | INFO     | ready for new job
[2025-11-22 12:05:47] 2025-11-22 11:00:32,700 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 12:05:47] 2025-11-22 11:00:32,707 | INFO     | ***************************************
[2025-11-22 12:05:47] 2025-11-22 11:00:32,707 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 12:05:47] 2025-11-22 11:00:32,707 | INFO     | ***************************************
[2025-11-22 12:05:47] 2025-11-22 11:00:32,707 | INFO     | 
[2025-11-22 12:05:47] 2025-11-22 11:00:32,716 | INFO     | architecture information:
[2025-11-22 12:05:47] 2025-11-22 11:00:32,716 | INFO     | executing command: cat /etc/os-release
[2025-11-22 12:05:47] 2025-11-22 11:00:32,740 | INFO     | cat /etc/os-release:
[2025-11-22 12:05:47] NAME="CentOS Linux"
[2025-11-22 12:05:47] VERSION="7 (Core)"
[2025-11-22 12:05:47] ID="centos"
[2025-11-22 12:05:47] ID_LIKE="rhel fedora"
[2025-11-22 12:05:47] VERSION_ID="7"
[2025-11-22 12:05:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 12:05:47] ANSI_COLOR="0;31"
[2025-11-22 12:05:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 12:05:47] HOME_URL="https://www.centos.org/"
[2025-11-22 12:05:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 12:05:47] 
[2025-11-22 12:05:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 12:05:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 12:05:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 12:05:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 12:05:47] 
[2025-11-22 12:05:47] 2025-11-22 11:00:32,740 | INFO     | ***************************************
[2025-11-22 12:05:47] 2025-11-22 11:00:33,244 | INFO     | executing command: df -mP /scratch/boinc/var/slot112/slots/0
[2025-11-22 12:05:47] 2025-11-22 11:00:33,267 | INFO     | sufficient remaining disk space (3292194144256 B)
[2025-11-22 12:05:47] 2025-11-22 11:00:33,267 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 12:05:47] 2025-11-22 11:00:33,268 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 12:05:47] 2025-11-22 11:00:33,268 | INFO     | update_server=False
[2025-11-22 12:05:47] 2025-11-22 11:00:33,268 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 12:05:47] 2025-11-22 11:00:33,604 | INFO     | all payload control threads have been joined
[2025-11-22 12:05:47] 2025-11-22 11:00:33,660 | INFO     | all job control threads have been joined
[2025-11-22 12:05:47] 2025-11-22 11:00:33,884 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 12:05:47] 2025-11-22 11:00:33,935 | INFO     | all data control threads have been joined
[2025-11-22 12:05:47] 2025-11-22 11:00:34,221 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 12:05:47] 2025-11-22 11:00:34,221 | INFO     | aborting loop
[2025-11-22 12:05:47] 2025-11-22 11:00:34,272 | INFO     | [job] retrieve thread has finished
[2025-11-22 12:05:47] 2025-11-22 11:00:34,585 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 12:05:47] 2025-11-22 11:00:34,609 | INFO     | [payload] control thread has finished
[2025-11-22 12:05:47] 2025-11-22 11:00:34,666 | INFO     | [job] control thread has finished
[2025-11-22 12:05:47] 2025-11-22 11:00:34,938 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 12:05:47] 2025-11-22 11:00:34,940 | INFO     | [data] control thread has finished
[2025-11-22 12:05:47] 2025-11-22 11:00:35,067 | INFO     | [data] copytool_in thread has finished
[2025-11-22 12:05:47] 2025-11-22 11:00:35,089 | INFO     | [payload] validate_post thread has finished
[2025-11-22 12:05:47] 2025-11-22 11:00:35,227 | INFO     | [job] job monitor thread has finished
[2025-11-22 12:05:47] 2025-11-22 11:00:35,345 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 12:05:47] 2025-11-22 11:00:35,345 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 12:05:47] 2025-11-22 11:00:35,559 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 12:05:47] 2025-11-22 11:00:35,677 | INFO     | [job] validate thread has finished
[2025-11-22 12:05:47] 2025-11-22 11:00:35,691 | INFO     | [payload] failed_post thread has finished
[2025-11-22 12:05:47] 2025-11-22 11:00:35,891 | INFO     | [data] copytool_out thread has finished
[2025-11-22 12:05:47] 2025-11-22 11:00:35,965 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 12:05:47] 2025-11-22 11:00:36,564 | INFO     | [job] queue monitor thread has finished
[2025-11-22 12:05:47] 2025-11-22 11:00:39,970 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 12:05:47] 2025-11-22 11:01:04,540 | INFO     | PID=2271067 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 12:05:47] 2025-11-22 11:01:04,540 | INFO     | .. there are 8 such processes running
[2025-11-22 12:05:47] 2025-11-22 11:01:04,541 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 12:05:47] 2025-11-22 11:01:04,541 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 12:05:47] 2025-11-22 11:01:04,541 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 12:05:47] 2025-11-22 11:01:23,695 | INFO     | [monitor] cgroup control has ended
[2025-11-22 12:05:47] 2025-11-22 11:01:24,705 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22875978610496)>', '<ExcThread(monitor, started 22875130033920)>']
[2025-11-22 12:05:47] 2025-11-22 11:01:25,642 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 12:05:47] 2025-11-22 11:01:25,642 | INFO     | [monitor] control thread has ended
[2025-11-22 12:05:47] 2025-11-22 11:01:29,730 | INFO     | all workflow threads have been joined
[2025-11-22 12:05:47] 2025-11-22 11:01:29,730 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 12:05:47] 2025-11-22 11:01:29,730 | INFO     | traces error code: 0
[2025-11-22 12:05:47] 2025-11-22 11:01:29,731 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 12:05:47] 2025-11-22 11:01:29,943 [wrapper] ==== pilot stdout END ====
[2025-11-22 12:05:47] 2025-11-22 11:01:29,949 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 12:05:47] 2025-11-22 11:01:29,951 [wrapper] pilotpid: 2271067
[2025-11-22 12:05:47] 2025-11-22 11:01:29,954 [wrapper] Pilot exit status: 0
[2025-11-22 12:05:47] 2025-11-22 11:01:29,967 [wrapper] pandaids: 6893871024
[2025-11-22 12:05:47] 2025-11-22 11:01:30,149 [wrapper] cleanup supervisor_pilot 3631309 2271068
[2025-11-22 12:05:47] 2025-11-22 11:01:30,153 [wrapper] Test setup, not cleaning
[2025-11-22 12:05:47] 2025-11-22 11:01:30,157 [wrapper] apfmon messages muted
[2025-11-22 12:05:47] 2025-11-22 11:01:30,161 [wrapper] ==== wrapper stdout END ====
[2025-11-22 12:05:47] 2025-11-22 11:01:30,165 [wrapper] ==== wrapper stderr END ====
[2025-11-22 12:05:47]  *** Error codes and diagnostics ***
[2025-11-22 12:05:47]     "exeErrorCode": 0,
[2025-11-22 12:05:47]     "exeErrorDiag": "",
[2025-11-22 12:05:47]     "pilotErrorCode": 0,
[2025-11-22 12:05:47]     "pilotErrorDiag": "",
[2025-11-22 12:05:47]  *** Listing of results directory ***
[2025-11-22 12:05:47] total 1311084
[2025-11-22 12:05:47] -rw-r--r-- 1 boinc boinc    576529 Nov 20 15:50 pilot3.tar.gz
[2025-11-22 12:05:47] -rwx------ 1 boinc boinc     36292 Nov 20 16:03 runpilot2-wrapper.sh
[2025-11-22 12:05:47] -rw-r--r-- 1 boinc boinc      5112 Nov 20 16:03 queuedata.json
[2025-11-22 12:05:47] -rw-r--r-- 1 boinc boinc       100 Nov 21 20:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 12:05:47] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 20:43 run_atlas
[2025-11-22 12:05:47] -rw-r--r-- 1 boinc boinc       105 Nov 21 20:43 job.xml
[2025-11-22 12:05:47] -rw-r--r-- 1 boinc boinc      6686 Nov 21 20:43 init_data.xml
[2025-11-22 12:05:47] -rw-r--r-- 2 boinc boinc 411120736 Nov 21 20:43 EVNT.47493127._000667.pool.root.1
[2025-11-22 12:05:47] -rw-r--r-- 2 boinc boinc     15847 Nov 21 20:43 start_atlas.sh
[2025-11-22 12:05:47] drwxrwx--x 2 boinc boinc      4096 Nov 21 20:43 shared
[2025-11-22 12:05:47] -rw-r--r-- 2 boinc boinc    590099 Nov 21 20:43 input.tar.gz
[2025-11-22 12:05:47] -rw-r--r-- 1 boinc boinc         0 Nov 21 20:43 boinc_lockfile
[2025-11-22 12:05:47] -rw-r--r-- 1 boinc boinc      2781 Nov 21 20:43 pandaJob.out
[2025-11-22 12:05:47] -rw------- 1 boinc boinc    989798 Nov 21 20:43 agis_schedconf.cvmfs.json
[2025-11-22 12:05:47] drwx------ 5 boinc boinc      4096 Nov 21 20:43 pilot3
[2025-11-22 12:05:47] -rw-r--r-- 1 boinc boinc       532 Nov 22 11:53 boinc_task_state.xml
[2025-11-22 12:05:47] -rw------- 1 boinc boinc 909047325 Nov 22 11:59 HITS.47523449._006661.pool.root.1
[2025-11-22 12:05:47] -rw------- 1 boinc boinc      1040 Nov 22 12:00 memory_monitor_summary.json
[2025-11-22 12:05:47] -rw------- 1 boinc boinc   1526164 Nov 22 12:00 agis_ddmendpoints.agis.ALL.json
[2025-11-22 12:05:47] -rw------- 1 boinc boinc   1645760 Nov 22 12:00 log.47523449._006661.job.log.tgz.1
[2025-11-22 12:05:47] -rw------- 1 boinc boinc      8589 Nov 22 12:00 heartbeat.json
[2025-11-22 12:05:47] -rw------- 1 boinc boinc        95 Nov 22 12:01 pilot_heartbeat.json
[2025-11-22 12:05:47] -rw------- 1 boinc boinc      4835 Nov 22 12:01 pilotlog.txt
[2025-11-22 12:05:47] -rw------- 1 boinc boinc   7585453 Nov 22 12:01 log.47523449._006661.job.log.1
[2025-11-22 12:05:47] -rw------- 1 boinc boinc       353 Nov 22 12:01 output.list
[2025-11-22 12:05:47] -rw-r--r-- 1 boinc boinc       620 Nov 22 12:01 runtime_log
[2025-11-22 12:05:47] -rw------- 1 boinc boinc   9246720 Nov 22 12:01 result.tar.gz
[2025-11-22 12:05:47] -rw-r--r-- 1 boinc boinc      9223 Nov 22 12:01 runtime_log.err
[2025-11-22 12:05:47] -rw------- 1 boinc boinc       670 Nov 22 12:01 eP6MDmZNLg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9AIKDmpX1Ken.diag
[2025-11-22 12:05:47] -rw-r--r-- 1 boinc boinc        28 Nov 22 12:05 wrapper_checkpoint.txt
[2025-11-22 12:05:47] -rw-r--r-- 1 boinc boinc      8192 Nov 22 12:05 boinc_mmap_file
[2025-11-22 12:05:47] -rw-r--r-- 1 boinc boinc     21110 Nov 22 12:05 stderr.txt
[2025-11-22 12:05:47] HITS file was successfully produced:
[2025-11-22 12:05:47] -rw------- 1 boinc boinc 909047325 Nov 22 11:59 shared/HITS.pool.root.1
[2025-11-22 12:05:47]  *** Contents of shared directory: ***
[2025-11-22 12:05:47] total 1298868
[2025-11-22 12:05:47] -rw-r--r-- 2 boinc boinc 411120736 Nov 21 20:43 ATLAS.root_0
[2025-11-22 12:05:47] -rw-r--r-- 2 boinc boinc     15847 Nov 21 20:43 start_atlas.sh
[2025-11-22 12:05:47] -rw-r--r-- 2 boinc boinc    590099 Nov 21 20:43 input.tar.gz
[2025-11-22 12:05:47] -rw------- 1 boinc boinc 909047325 Nov 22 11:59 HITS.pool.root.1
[2025-11-22 12:05:47] -rw------- 1 boinc boinc   9246720 Nov 22 12:01 result.tar.gz
12:05:48 (2264722): run_atlas exited; CPU time 220746.626318
12:05:48 (2264722): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN