Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:38:30 (3602183): wrapper (7.7.26015): starting
02:38:30 (3602183): wrapper: running run_atlas (--nthreads 3)
[2025-11-21 02:38:30] Arguments: --nthreads 3
[2025-11-21 02:38:30] Threads: 3
[2025-11-21 02:38:30] Checking for CVMFS
[2025-11-21 02:38:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 02:38:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 02:38:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 02:38:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 02:38:31] 2.9.2.0 16720 765 68480 153103 0 88 34446373 36864000 0 130560 0 10774555 99.999 16507 713 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-21 02:38:31] CVMFS is ok
[2025-11-21 02:38:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 02:38:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 02:38:31] Further information can be found at the LHC@home message board.
[2025-11-21 02:38:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 02:38:31] Checking for apptainer binary...
[2025-11-21 02:38:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 02:38:31] Running /usr/bin/apptainer --version
[2025-11-21 02:38:31] apptainer version 1.4.1-1.1
[2025-11-21 02:38:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 02:38:31] thA335
[2025-11-21 02:38:31] apptainer works
[2025-11-21 02:38:31] Set ATHENA_PROC_NUMBER=3
[2025-11-21 02:38:31] Set ATHENA_CORE_NUMBER=3
[2025-11-21 02:38:31] Starting ATLAS job with PandaID=6893868234
[2025-11-21 02:38:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 02:42:50]  *** The last 200 lines of the pilot log: ***
[2025-11-21 02:42:50] 2025-11-21 01:42:01,672 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 02:42:50] 2025-11-21 01:42:01,672 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-21 02:42:50] 2025-11-21 01:42:01,672 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 02:42:50] 2025-11-21 01:42:01,672 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 02:42:50] 2025-11-21 01:42:01,672 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 02:42:50] 2025-11-21 01:42:01,914 | INFO     | all job control threads have been joined
[2025-11-21 02:42:50] 2025-11-21 01:42:02,581 | INFO     | all payload control threads have been joined
[2025-11-21 02:42:50] 2025-11-21 01:42:02,584 | INFO     | all data control threads have been joined
[2025-11-21 02:42:50] 2025-11-21 01:42:02,605 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 02:42:50] 2025-11-21 01:42:02,606 | INFO     | aborting loop
[2025-11-21 02:42:50] 2025-11-21 01:42:02,677 | INFO     | [job] retrieve thread has finished
[2025-11-21 02:42:50] 2025-11-21 01:42:02,678 | INFO     | [job] queue monitor thread has finished
[2025-11-21 02:42:50] 2025-11-21 01:42:02,851 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 02:42:50] 2025-11-21 01:42:02,920 | INFO     | [job] control thread has finished
[2025-11-21 02:42:50] 2025-11-21 01:42:03,333 | INFO     | [data] copytool_in thread has finished
[2025-11-21 02:42:50] 2025-11-21 01:42:03,417 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 02:42:50] 2025-11-21 01:42:03,457 | INFO     | [payload] validate_post thread has finished
[2025-11-21 02:42:50] 2025-11-21 01:42:03,583 | INFO     | [job] validate thread has finished
[2025-11-21 02:42:50] 2025-11-21 01:42:03,587 | INFO     | [payload] control thread has finished
[2025-11-21 02:42:50] 2025-11-21 01:42:03,590 | INFO     | [data] control thread has finished
[2025-11-21 02:42:50] 2025-11-21 01:42:03,611 | INFO     | [job] job monitor thread has finished
[2025-11-21 02:42:50] 2025-11-21 01:42:03,673 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 02:42:50] 2025-11-21 01:42:03,678 | INFO     | [data] copytool_out thread has finished
[2025-11-21 02:42:50] 2025-11-21 01:42:03,734 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 02:42:50] 2025-11-21 01:42:03,983 | INFO     | [payload] failed_post thread has finished
[2025-11-21 02:42:50] 2025-11-21 01:42:05,679 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 02:42:50] 2025-11-21 01:42:43,826 | INFO     | [monitor] cgroup control has ended
[2025-11-21 02:42:50] 2025-11-21 01:42:45,455 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139862920038208)>', '<ExcThread(monitor, started 139862548129536)>']
[2025-11-21 02:42:50] 2025-11-21 01:42:45,906 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 02:42:50] 2025-11-21 01:42:45,906 | INFO     | [monitor] control thread has ended
[2025-11-21 02:42:50] 2025-11-21 01:42:50,481 | INFO     | all workflow threads have been joined
[2025-11-21 02:42:50] 2025-11-21 01:42:50,482 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 02:42:50] 2025-11-21 01:42:50,482 | INFO     | traces error code: 0
[2025-11-21 02:42:50] 2025-11-21 01:42:50,483 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 02:42:50] 2025-11-21 01:42:50,528 [wrapper] ==== pilot stdout END ====
[2025-11-21 02:42:50] 2025-11-21 01:42:50,531 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 02:42:50] 2025-11-21 01:42:50,534 [wrapper] pilotpid: 3605924
[2025-11-21 02:42:50] 2025-11-21 01:42:50,537 [wrapper] Pilot exit status: 0
[2025-11-21 02:42:50] 2025-11-21 01:42:50,544 [wrapper] pandaids: 6893868234
[2025-11-21 02:42:50] 2025-11-21 01:42:50,562 [wrapper] cleanup supervisor_pilot 3605930 3605925
[2025-11-21 02:42:50] 2025-11-21 01:42:50,565 [wrapper] Test setup, not cleaning
[2025-11-21 02:42:50] 2025-11-21 01:42:50,568 [wrapper] apfmon messages muted
[2025-11-21 02:42:50] 2025-11-21 01:42:50,571 [wrapper] ==== wrapper stdout END ====
[2025-11-21 02:42:50] 2025-11-21 01:42:50,574 [wrapper] ==== wrapper stderr END ====
[2025-11-21 02:42:50]  *** Error codes and diagnostics ***
[2025-11-21 02:42:50]     "exeErrorCode": 65,
[2025-11-21 02:42:50]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 02:42:50]     "pilotErrorCode": 1305,
[2025-11-21 02:42:50]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 02:42:50]  *** Listing of results directory ***
[2025-11-21 02:42:50] total 406028
[2025-11-21 02:42:50] -rw-r--r-- 1 boinc boinc    576529 Nov 20 15:06 pilot3.tar.gz
[2025-11-21 02:42:50] -rwx------ 1 boinc boinc     36292 Nov 20 15:41 runpilot2-wrapper.sh
[2025-11-21 02:42:50] -rw-r--r-- 1 boinc boinc      5112 Nov 20 15:41 queuedata.json
[2025-11-21 02:42:50] -rw-r--r-- 1 boinc boinc       100 Nov 21 02:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 02:42:50] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 02:38 run_atlas
[2025-11-21 02:42:50] -rw-r--r-- 1 boinc boinc       105 Nov 21 02:38 job.xml
[2025-11-21 02:42:50] -rw-r--r-- 2 boinc boinc 411582060 Nov 21 02:38 EVNT.47493127._000632.pool.root.1
[2025-11-21 02:42:50] -rw-r--r-- 2 boinc boinc    590094 Nov 21 02:38 input.tar.gz
[2025-11-21 02:42:50] -rw-r--r-- 2 boinc boinc     15847 Nov 21 02:38 start_atlas.sh
[2025-11-21 02:42:50] drwxrwx--x 2 boinc boinc      4096 Nov 21 02:38 shared
[2025-11-21 02:42:50] -rw-r--r-- 1 boinc boinc         0 Nov 21 02:38 boinc_setup_complete
[2025-11-21 02:42:50] -rw-r--r-- 1 boinc boinc      6194 Nov 21 02:38 init_data.xml
[2025-11-21 02:42:50] -rw-r--r-- 1 boinc boinc         0 Nov 21 02:38 boinc_lockfile
[2025-11-21 02:42:50] -rw-r--r-- 1 boinc boinc      2785 Nov 21 02:38 pandaJob.out
[2025-11-21 02:42:50] -rw------- 1 boinc boinc    989817 Nov 21 02:38 agis_schedconf.cvmfs.json
[2025-11-21 02:42:50] -rw------- 1 boinc boinc   1526164 Nov 21 02:38 agis_ddmendpoints.agis.ALL.json
[2025-11-21 02:42:50] drwx------ 5 boinc boinc      4096 Nov 21 02:38 pilot3
[2025-11-21 02:42:50] -rw-r--r-- 1 boinc boinc       523 Nov 21 02:39 boinc_task_state.xml
[2025-11-21 02:42:50] -rw------- 1 boinc boinc       946 Nov 21 02:39 memory_monitor_summary.json
[2025-11-21 02:42:50] -rw------- 1 boinc boinc     54256 Nov 21 02:39 log.47523449._006318.job.log.tgz.1
[2025-11-21 02:42:50] -rw------- 1 boinc boinc        95 Nov 21 02:41 pilot_heartbeat.json
[2025-11-21 02:42:50] -rw------- 1 boinc boinc      8401 Nov 21 02:42 heartbeat.json
[2025-11-21 02:42:50] -rw-r--r-- 1 boinc boinc      8192 Nov 21 02:42 boinc_mmap_file
[2025-11-21 02:42:50] -rw-r--r-- 1 boinc boinc        23 Nov 21 02:42 wrapper_checkpoint.txt
[2025-11-21 02:42:50] -rw------- 1 boinc boinc      4556 Nov 21 02:42 pilotlog.txt
[2025-11-21 02:42:50] -rw------- 1 boinc boinc     93720 Nov 21 02:42 log.47523449._006318.job.log.1
[2025-11-21 02:42:50] -rw------- 1 boinc boinc       186 Nov 21 02:42 output.list
[2025-11-21 02:42:50] -rw-r--r-- 1 boinc boinc       620 Nov 21 02:42 runtime_log
[2025-11-21 02:42:50] -rw------- 1 boinc boinc    163840 Nov 21 02:42 result.tar.gz
[2025-11-21 02:42:50] -rw-r--r-- 1 boinc boinc      8744 Nov 21 02:42 runtime_log.err
[2025-11-21 02:42:50] -rw------- 1 boinc boinc       649 Nov 21 02:42 OIrKDmU1Kg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmI7HKDmB1VXXn.diag
[2025-11-21 02:42:50] -rw-r--r-- 1 boinc boinc      7231 Nov 21 02:42 stderr.txt
[2025-11-21 02:42:50] No HITS result produced
[2025-11-21 02:42:50]  *** Contents of shared directory: ***
[2025-11-21 02:42:50] total 402696
[2025-11-21 02:42:50] -rw-r--r-- 2 boinc boinc 411582060 Nov 21 02:38 ATLAS.root_0
[2025-11-21 02:42:50] -rw-r--r-- 2 boinc boinc    590094 Nov 21 02:38 input.tar.gz
[2025-11-21 02:42:50] -rw-r--r-- 2 boinc boinc     15847 Nov 21 02:38 start_atlas.sh
[2025-11-21 02:42:50] -rw------- 1 boinc boinc    163840 Nov 21 02:42 result.tar.gz
02:42:52 (3602183): run_atlas exited; CPU time 31.608191
02:42:52 (3602183): called boinc_finish(0)

</stderr_txt>
]]>

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