Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:45:14 (23928): wrapper (7.7.26015): starting
04:45:14 (23928): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 04:45:14] Arguments: --nthreads 8
[2025-11-24 04:45:14] Threads: 8
[2025-11-24 04:45:14] Checking for CVMFS
[2025-11-24 04:45:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 04:45:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 04:45:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 04:45:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 04:45:17] 2.11.2.0 5744 281917 141480 153231 1 85 19934085 25165825 4632 130560 2 161003703 99.889 80782735 3395 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 04:45:17] CVMFS is ok
[2025-11-24 04:45:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 04:45:17] Checking for apptainer binary...
[2025-11-24 04:45:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 04:45:17] Running /usr/bin/apptainer --version
[2025-11-24 04:45:17] apptainer version 1.3.2-1.el7
[2025-11-24 04:45:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 04:45:21] cg-vwn299.simple-grid.lan
[2025-11-24 04:45:21] apptainer works
[2025-11-24 04:45:21] Set ATHENA_PROC_NUMBER=8
[2025-11-24 04:45:21] Set ATHENA_CORE_NUMBER=8
[2025-11-24 04:45:22] Starting ATLAS job with PandaID=6893869908
[2025-11-24 04:45:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 00:40:07]  *** The last 200 lines of the pilot log: ***
[2025-11-25 00:40:07] 2025-11-24 23:39:07,214 | INFO     | time since job start (71355s) is within the limit (172800.0s)
[2025-11-25 00:40:07] 2025-11-24 23:39:08,436 | INFO     | monitor loop #4776: job 0:6893869908 is in state 'finished'
[2025-11-25 00:40:07] 2025-11-24 23:39:08,437 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:40:07] 2025-11-24 23:39:09,223 | INFO     | time since job start (71357s) is within the limit (172800.0s)
[2025-11-25 00:40:07] 2025-11-24 23:39:10,942 | INFO     | monitor loop #4777: job 0:6893869908 is in state 'finished'
[2025-11-25 00:40:07] 2025-11-24 23:39:10,943 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:40:07] 2025-11-24 23:39:11,231 | INFO     | time since job start (71359s) is within the limit (172800.0s)
[2025-11-25 00:40:07] 2025-11-24 23:39:13,238 | INFO     | time since job start (71361s) is within the limit (172800.0s)
[2025-11-25 00:40:07] 2025-11-24 23:39:13,447 | INFO     | monitor loop #4778: job 0:6893869908 is in state 'finished'
[2025-11-25 00:40:07] 2025-11-24 23:39:13,448 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:40:07] 2025-11-24 23:39:14,458 | INFO     | PID=27761 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 00:40:07] 2025-11-24 23:39:14,458 | INFO     | .. there are 9 such processes running
[2025-11-25 00:40:07] 2025-11-24 23:39:15,460 | INFO     | time since job start (71363s) is within the limit (172800.0s)
[2025-11-25 00:40:07] 2025-11-24 23:39:15,962 | INFO     | monitor loop #4779: job 0:6893869908 is in state 'finished'
[2025-11-25 00:40:07] 2025-11-24 23:39:15,963 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:40:07] 2025-11-24 23:39:16,869 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 00:40:07] 2025-11-24 23:39:16,870 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.9959999999996
[2025-11-25 00:40:07] 2025-11-24 23:39:16,872 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6893869908/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 00:40:07] 2025-11-24 23:39:16,873 | INFO     | extracted standard info from prmon json
[2025-11-25 00:40:07] 2025-11-24 23:39:16,873 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 00:40:07] 2025-11-24 23:39:16,873 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 00:40:07] 2025-11-24 23:39:16,902 | INFO     | fitting pss+swap vs Time
[2025-11-25 00:40:07] 2025-11-24 23:39:16,904 | INFO     | sum of square deviations: 484011066667.77997
[2025-11-25 00:40:07] 2025-11-24 23:39:16,960 | INFO     | sum of deviations: 1963840490486.6475
[2025-11-25 00:40:07] 2025-11-24 23:39:16,961 | INFO     | mean x: 1763992059.513793
[2025-11-25 00:40:07] 2025-11-24 23:39:16,961 | INFO     | mean y: 2825198.834482759
[2025-11-25 00:40:07] 2025-11-24 23:39:16,961 | INFO     | intersect: -7154447165.245382
[2025-11-25 00:40:07] 2025-11-24 23:39:16,963 | INFO     | chi2: 25.81146321564308
[2025-11-25 00:40:07] 2025-11-24 23:39:16,964 | INFO     | sum of square deviations: 477779643382.61835
[2025-11-25 00:40:07] 2025-11-24 23:39:17,007 | INFO     | sum of deviations: 2342543342713.0728
[2025-11-25 00:40:07] 2025-11-24 23:39:17,007 | INFO     | mean x: 1763991907.0181818
[2025-11-25 00:40:07] 2025-11-24 23:39:17,008 | INFO     | mean y: 2834465.32987013
[2025-11-25 00:40:07] 2025-11-24 23:39:17,008 | INFO     | intersect: -8645980015.60854
[2025-11-25 00:40:07] 2025-11-24 23:39:17,009 | INFO     | chi2: 22.519107425188903
[2025-11-25 00:40:07] 2025-11-24 23:39:17,009 | INFO     | current chi2=22.519107425188903 (change=12.75540159404384 %)
[2025-11-25 00:40:07] 2025-11-24 23:39:17,010 | INFO     | right removable region: 1154
[2025-11-25 00:40:07] 2025-11-24 23:39:17,011 | INFO     | sum of square deviations: 477778926022.61835
[2025-11-25 00:40:07] 2025-11-24 23:39:17,049 | INFO     | sum of deviations: 1482998001720.3062
[2025-11-25 00:40:07] 2025-11-24 23:39:17,050 | INFO     | mean x: 1763992212.0181818
[2025-11-25 00:40:07] 2025-11-24 23:39:17,050 | INFO     | mean y: 2836964.2233766234
[2025-11-25 00:40:07] 2025-11-24 23:39:17,050 | INFO     | intersect: -5472492279.053677
[2025-11-25 00:40:07] 2025-11-24 23:39:17,052 | INFO     | chi2: 21.220107222117573
[2025-11-25 00:40:07] 2025-11-24 23:39:17,052 | INFO     | current chi2=21.220107222117573 (change=17.788050042598545 %)
[2025-11-25 00:40:07] 2025-11-24 23:39:17,052 | INFO     | left removable region: 10
[2025-11-25 00:40:07] 2025-11-24 23:39:17,054 | INFO     | sum of square deviations: 464257851207.10474
[2025-11-25 00:40:07] 2025-11-24 23:39:17,095 | INFO     | sum of deviations: 1553599857721.2256
[2025-11-25 00:40:07] 2025-11-24 23:39:17,096 | INFO     | mean x: 1763992181.527972
[2025-11-25 00:40:07] 2025-11-24 23:39:17,096 | INFO     | mean y: 2858514.993006993
[2025-11-25 00:40:07] 2025-11-24 23:39:17,096 | INFO     | intersect: -5900192979.166134
[2025-11-25 00:40:07] 2025-11-24 23:39:17,097 | INFO     | chi2: 13.929564549318833
[2025-11-25 00:40:07] 2025-11-24 23:39:17,098 | INFO     | current memory leak: 3.35 B/s (using 1144 data points, chi2=13.93)
[2025-11-25 00:40:07] 2025-11-24 23:39:17,099 | INFO     | could have reported an average CPU frequency of 1999 MHz (39 samples)
[2025-11-25 00:40:07] 2025-11-24 23:39:17,099 | INFO     | ..............................
[2025-11-25 00:40:07] 2025-11-24 23:39:17,100 | INFO     | . Timing measurements:
[2025-11-25 00:40:07] 2025-11-24 23:39:17,100 | INFO     | . get job = 0 s
[2025-11-25 00:40:07] 2025-11-24 23:39:17,100 | INFO     | . initial setup = 13 s
[2025-11-25 00:40:07] 2025-11-24 23:39:17,100 | INFO     | . payload setup = 143 s
[2025-11-25 00:40:07] 2025-11-24 23:39:17,100 | INFO     | . stage-in = 0 s
[2025-11-25 00:40:07] 2025-11-24 23:39:17,100 | INFO     | . payload execution = 70907 s
[2025-11-25 00:40:07] 2025-11-24 23:39:17,100 | INFO     | . stage-out = 5 s
[2025-11-25 00:40:07] 2025-11-24 23:39:17,100 | INFO     | . log creation = 2 s
[2025-11-25 00:40:07] 2025-11-24 23:39:17,100 | INFO     | ..............................
[2025-11-25 00:40:07] 2025-11-24 23:39:17,228 | INFO     | 
[2025-11-25 00:40:07] 2025-11-24 23:39:17,229 | INFO     | job summary report
[2025-11-25 00:40:07] 2025-11-24 23:39:17,229 | INFO     | --------------------------------------------------
[2025-11-25 00:40:07] 2025-11-24 23:39:17,229 | INFO     | PanDA job id: 6893869908
[2025-11-25 00:40:07] 2025-11-24 23:39:17,229 | INFO     | task id: 47523449
[2025-11-25 00:40:07] 2025-11-24 23:39:17,229 | INFO     | errors: (none)
[2025-11-25 00:40:07] 2025-11-24 23:39:17,229 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 00:40:07] 2025-11-24 23:39:17,230 | INFO     | pilot state: finished 
[2025-11-25 00:40:07] 2025-11-24 23:39:17,230 | INFO     | transexitcode: 0
[2025-11-25 00:40:07] 2025-11-24 23:39:17,230 | INFO     | exeerrorcode: 0
[2025-11-25 00:40:07] 2025-11-24 23:39:17,230 | INFO     | exeerrordiag: 
[2025-11-25 00:40:07] 2025-11-24 23:39:17,230 | INFO     | exitcode: 0
[2025-11-25 00:40:07] 2025-11-24 23:39:17,230 | INFO     | exitmsg: OK
[2025-11-25 00:40:07] 2025-11-24 23:39:17,230 | INFO     | cpuconsumptiontime: 336319 s
[2025-11-25 00:40:07] 2025-11-24 23:39:17,230 | INFO     | nevents: 1000
[2025-11-25 00:40:07] 2025-11-24 23:39:17,230 | INFO     | neventsw: 0
[2025-11-25 00:40:07] 2025-11-24 23:39:17,230 | INFO     | pid: 1917
[2025-11-25 00:40:07] 2025-11-24 23:39:17,230 | INFO     | pgrp: 1917
[2025-11-25 00:40:07] 2025-11-24 23:39:17,231 | INFO     | corecount: 8
[2025-11-25 00:40:07] 2025-11-24 23:39:17,231 | INFO     | event service: False
[2025-11-25 00:40:07] 2025-11-24 23:39:17,231 | INFO     | sizes: {0: 2297978, 1: 2298663, 2: 2298862, 3: 2298890, 13: 2298890, 24: 2298946, 35: 2299102, 46: 2299130, 56: 2299158, 67: 2299186, 78: 2299214, 89: 2299550, 99:
[2025-11-25 00:40:07] 2025-11-24 23:39:17,231 | INFO     | --------------------------------------------------
[2025-11-25 00:40:07] 2025-11-24 23:39:17,231 | INFO     | 
[2025-11-25 00:40:07] 2025-11-24 23:39:17,231 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-11-25 00:40:07] 2025-11-24 23:39:17,467 | INFO     | time since job start (71365s) is within the limit (172800.0s)
[2025-11-25 00:40:07] 2025-11-24 23:39:17,793 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 00:40:07] 2025-11-24 23:39:17,794 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 00:40:07] 2025-11-24 23:39:17,794 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 00:40:07] 2025-11-24 23:39:17,794 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 00:40:07] 2025-11-24 23:39:17,794 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 00:40:07] 2025-11-24 23:39:17,794 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 00:40:07] 2025-11-24 23:39:17,794 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 00:40:07] 2025-11-24 23:39:17,794 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 00:40:07] 2025-11-24 23:39:17,794 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 00:40:07] 2025-11-24 23:39:17,794 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 00:40:07] 2025-11-24 23:39:17,795 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 00:40:07] 2025-11-24 23:39:17,795 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 00:40:07] 2025-11-24 23:39:17,795 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 00:40:07] 2025-11-24 23:39:17,795 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 00:40:07] 2025-11-24 23:39:17,795 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 00:40:07] 2025-11-24 23:39:17,795 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 00:40:07] 2025-11-24 23:39:17,795 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 00:40:07] 2025-11-24 23:39:17,795 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 00:40:07] 2025-11-24 23:39:17,795 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 00:40:07] 2025-11-24 23:39:17,795 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 00:40:07] 2025-11-24 23:39:17,796 | INFO     | job 6893869908 has completed (purged errors)
[2025-11-25 00:40:07] 2025-11-24 23:39:17,796 | INFO     | overall cleanup function is called
[2025-11-25 00:40:07] 2025-11-24 23:39:18,812 | INFO     | --- collectZombieJob: --- 10, [1917]
[2025-11-25 00:40:07] 2025-11-24 23:39:18,813 | INFO     | zombie collector waiting for pid 1917
[2025-11-25 00:40:07] 2025-11-24 23:39:18,813 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 00:40:07] 2025-11-24 23:39:18,813 | INFO     | collected zombie processes
[2025-11-25 00:40:07] 2025-11-24 23:39:18,813 | INFO     | will attempt to kill all subprocesses of pid=1917
[2025-11-25 00:40:07] 2025-11-24 23:39:18,926 | INFO     | process IDs to be killed: [1917] (in reverse order)
[2025-11-25 00:40:07] 2025-11-24 23:39:19,913 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 00:40:07] 2025-11-24 23:39:19,914 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 00:40:07] 2025-11-24 23:39:19,917 | INFO     | did not find any defunct processes belonging to 1917
[2025-11-25 00:40:07] 2025-11-24 23:39:19,920 | INFO     | did not find any defunct processes belonging to 1917
[2025-11-25 00:40:07] 2025-11-24 23:39:19,980 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 00:40:07] 2025-11-24 23:39:19,980 | INFO     | ready for new job
[2025-11-25 00:40:07] 2025-11-24 23:39:19,980 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 00:40:07] 2025-11-24 23:39:19,985 | INFO     | ***************************************
[2025-11-25 00:40:07] 2025-11-24 23:39:19,986 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 00:40:07] 2025-11-24 23:39:19,986 | INFO     | ***************************************
[2025-11-25 00:40:07] 2025-11-24 23:39:19,986 | INFO     | 
[2025-11-25 00:40:07] 2025-11-24 23:39:19,987 | INFO     | pilot is running in a VM
[2025-11-25 00:40:07] 2025-11-24 23:39:19,987 | INFO     | architecture information:
[2025-11-25 00:40:07] 2025-11-24 23:39:19,998 | INFO     | executing command: cat /etc/os-release
[2025-11-25 00:40:07] 2025-11-24 23:39:20,335 | INFO     | cat /etc/os-release:
[2025-11-25 00:40:07] NAME="CentOS Linux"
[2025-11-25 00:40:07] VERSION="7 (Core)"
[2025-11-25 00:40:07] ID="centos"
[2025-11-25 00:40:07] ID_LIKE="rhel fedora"
[2025-11-25 00:40:07] VERSION_ID="7"
[2025-11-25 00:40:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 00:40:07] ANSI_COLOR="0;31"
[2025-11-25 00:40:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 00:40:07] HOME_URL="https://www.centos.org/"
[2025-11-25 00:40:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 00:40:07] 
[2025-11-25 00:40:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 00:40:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 00:40:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 00:40:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 00:40:07] 
[2025-11-25 00:40:07] 2025-11-24 23:39:20,335 | INFO     | ***************************************
[2025-11-25 00:40:07] 2025-11-24 23:39:20,839 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-11-25 00:40:07] 2025-11-24 23:39:21,141 | INFO     | sufficient remaining disk space (495015952384 B)
[2025-11-25 00:40:07] 2025-11-24 23:39:21,142 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 00:40:07] 2025-11-24 23:39:21,142 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 00:40:07] 2025-11-24 23:39:21,142 | INFO     | update_server=False
[2025-11-25 00:40:07] 2025-11-24 23:39:21,142 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 00:40:07] 2025-11-24 23:39:21,142 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 00:40:07] 2025-11-24 23:39:21,719 | INFO     | all payload control threads have been joined
[2025-11-25 00:40:07] 2025-11-24 23:39:21,906 | INFO     | all data control threads have been joined
[2025-11-25 00:40:07] 2025-11-24 23:39:21,996 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 00:40:07] 2025-11-24 23:39:21,997 | INFO     | aborting loop
[2025-11-25 00:40:07] 2025-11-24 23:39:22,053 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 00:40:07] 2025-11-24 23:39:22,148 | INFO     | [job] retrieve thread has finished
[2025-11-25 00:40:07] 2025-11-24 23:39:22,240 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 00:40:07] 2025-11-24 23:39:22,402 | INFO     | [payload] failed_post thread has finished
[2025-11-25 00:40:07] 2025-11-24 23:39:22,437 | INFO     | [job] validate thread has finished
[2025-11-25 00:40:07] 2025-11-24 23:39:22,454 | INFO     | [data] copytool_in thread has finished
[2025-11-25 00:40:07] 2025-11-24 23:39:22,580 | INFO     | all job control threads have been joined
[2025-11-25 00:40:07] 2025-11-24 23:39:22,591 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 00:40:07] 2025-11-24 23:39:22,727 | INFO     | [payload] control thread has finished
[2025-11-25 00:40:07] 2025-11-24 23:39:22,913 | INFO     | [data] control thread has finished
[2025-11-25 00:40:07] 2025-11-24 23:39:22,947 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 00:40:07] 2025-11-24 23:39:23,003 | INFO     | [job] job monitor thread has finished
[2025-11-25 00:40:07] 2025-11-24 23:39:23,047 | INFO     | [payload] validate_post thread has finished
[2025-11-25 00:40:07] 2025-11-24 23:39:23,072 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 00:40:07] 2025-11-24 23:39:23,247 | INFO     | [job] queue monitor thread has finished
[2025-11-25 00:40:07] 2025-11-24 23:39:23,370 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 00:40:07] 2025-11-24 23:39:23,587 | INFO     | [job] control thread has finished
[2025-11-25 00:40:07] 2025-11-24 23:39:24,061 | INFO     | [data] copytool_out thread has finished
[2025-11-25 00:40:07] 2025-11-24 23:39:25,151 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 00:40:07] 2025-11-24 23:39:50,687 | INFO     | PID=27761 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 00:40:07] 2025-11-24 23:39:50,687 | INFO     | .. there are 9 such processes running
[2025-11-25 00:40:07] 2025-11-24 23:39:50,687 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 00:40:07] 2025-11-24 23:39:50,688 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 00:40:07] 2025-11-24 23:39:50,688 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 00:40:07] 2025-11-24 23:39:55,182 | INFO     | [monitor] cgroup control has ended
[2025-11-25 00:40:07] 2025-11-24 23:39:56,830 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140580633331520)>', '<ExcThread(monitor, started 140579958671104)>']
[2025-11-25 00:40:07] 2025-11-24 23:39:57,730 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 00:40:07] 2025-11-24 23:39:57,731 | INFO     | [monitor] control thread has ended
[2025-11-25 00:40:07] 2025-11-24 23:40:01,855 | INFO     | all workflow threads have been joined
[2025-11-25 00:40:07] 2025-11-24 23:40:01,856 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 00:40:07] 2025-11-24 23:40:01,856 | INFO     | traces error code: 0
[2025-11-25 00:40:07] 2025-11-24 23:40:01,856 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 00:40:07] 2025-11-24 23:40:02,218 [wrapper] ==== pilot stdout END ====
[2025-11-25 00:40:07] 2025-11-24 23:40:02,303 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 00:40:07] 2025-11-24 23:40:02,349 [wrapper] pilotpid: 27761
[2025-11-25 00:40:07] 2025-11-24 23:40:02,419 [wrapper] Pilot exit status: 0
[2025-11-25 00:40:07] 2025-11-24 23:40:02,857 [wrapper] pandaids: 6893869908
[2025-11-25 00:40:07] 2025-11-24 23:40:03,718 [wrapper] cleanup supervisor_pilot 21503 27762
[2025-11-25 00:40:07] 2025-11-24 23:40:03,815 [wrapper] Test setup, not cleaning
[2025-11-25 00:40:07] 2025-11-24 23:40:03,947 [wrapper] apfmon messages muted
[2025-11-25 00:40:07] 2025-11-24 23:40:04,005 [wrapper] ==== wrapper stdout END ====
[2025-11-25 00:40:07] 2025-11-24 23:40:04,094 [wrapper] ==== wrapper stderr END ====
[2025-11-25 00:40:07]  *** Error codes and diagnostics ***
[2025-11-25 00:40:07]     "exeErrorCode": 0,
[2025-11-25 00:40:07]     "exeErrorDiag": "",
[2025-11-25 00:40:07]     "pilotErrorCode": 0,
[2025-11-25 00:40:07]     "pilotErrorDiag": "",
[2025-11-25 00:40:07]  *** Listing of results directory ***
[2025-11-25 00:40:07] total 1319052
[2025-11-25 00:40:07] -rw-r--r--. 1 boinc boinc    576529 Nov 20 15:06 pilot3.tar.gz
[2025-11-25 00:40:07] -rwx------. 1 boinc boinc     36292 Nov 20 15:47 runpilot2-wrapper.sh
[2025-11-25 00:40:07] -rw-r--r--. 1 boinc boinc      5112 Nov 20 15:48 queuedata.json
[2025-11-25 00:40:07] -rw-r--r--. 1 boinc boinc       100 Nov 24 04:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 00:40:07] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 04:45 run_atlas
[2025-11-25 00:40:07] -rw-r--r--. 1 boinc boinc       105 Nov 24 04:45 job.xml
[2025-11-25 00:40:07] -rw-r--r--. 2 boinc boinc 410893075 Nov 24 04:45 EVNT.47493127._000644.pool.root.1
[2025-11-25 00:40:07] -rw-r--r--. 1 boinc boinc      6389 Nov 24 04:45 init_data.xml
[2025-11-25 00:40:07] -rw-r--r--. 2 boinc boinc     15847 Nov 24 04:45 start_atlas.sh
[2025-11-25 00:40:07] drwxrwx--x. 2 boinc boinc        68 Nov 24 04:45 shared
[2025-11-25 00:40:07] -rw-r--r--. 2 boinc boinc    590093 Nov 24 04:45 input.tar.gz
[2025-11-25 00:40:07] -rw-r--r--. 1 boinc boinc         0 Nov 24 04:45 boinc_lockfile
[2025-11-25 00:40:07] -rw-r--r--. 1 boinc boinc      2785 Nov 24 04:45 pandaJob.out
[2025-11-25 00:40:07] -rw-------. 1 boinc boinc    989786 Nov 24 04:49 agis_schedconf.cvmfs.json
[2025-11-25 00:40:07] drwx------. 5 boinc boinc      4096 Nov 24 04:49 pilot3
[2025-11-25 00:40:07] -rw-r--r--. 1 boinc boinc       533 Nov 25 00:08 boinc_task_state.xml
[2025-11-25 00:40:07] -rw-------. 1 boinc boinc 912314552 Nov 25 00:36 HITS.47523449._006432.pool.root.1
[2025-11-25 00:40:07] -rw-------. 1 boinc boinc      1035 Nov 25 00:37 memory_monitor_summary.json
[2025-11-25 00:40:07] -rw-------. 1 boinc boinc   1516227 Nov 25 00:37 agis_ddmendpoints.agis.ALL.json
[2025-11-25 00:40:07] -rw-------. 1 boinc boinc   2314952 Nov 25 00:37 log.47523449._006432.job.log.tgz.1
[2025-11-25 00:40:07] -rw-------. 1 boinc boinc        95 Nov 25 00:38 pilot_heartbeat.json
[2025-11-25 00:40:07] -rw-------. 1 boinc boinc      7961 Nov 25 00:39 heartbeat.json
[2025-11-25 00:40:07] -rw-r--r--. 1 boinc boinc      8192 Nov 25 00:39 boinc_mmap_file
[2025-11-25 00:40:07] -rw-r--r--. 1 boinc boinc        29 Nov 25 00:39 wrapper_checkpoint.txt
[2025-11-25 00:40:07] -rw-------. 1 boinc boinc      4884 Nov 25 00:40 pilotlog.txt
[2025-11-25 00:40:07] -rw-------. 1 boinc boinc   9487367 Nov 25 00:40 log.47523449._006432.job.log.1
[2025-11-25 00:40:07] -rw-------. 1 boinc boinc       353 Nov 25 00:40 output.list
[2025-11-25 00:40:07] -rw-r--r--. 1 boinc boinc       620 Nov 25 00:40 runtime_log
[2025-11-25 00:40:07] -rw-------. 1 boinc boinc  11816960 Nov 25 00:40 result.tar.gz
[2025-11-25 00:40:07] -rw-------. 1 boinc boinc       661 Nov 25 00:40 ToJKDmB8Kg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmy8HKDmnzmZfm.diag
[2025-11-25 00:40:07] -rw-r--r--. 1 boinc boinc      8817 Nov 25 00:40 runtime_log.err
[2025-11-25 00:40:07] -rw-r--r--. 1 boinc boinc     21508 Nov 25 00:40 stderr.txt
[2025-11-25 00:40:07] HITS file was successfully produced:
[2025-11-25 00:40:07] -rw-------. 1 boinc boinc 912314552 Nov 25 00:36 shared/HITS.pool.root.1
[2025-11-25 00:40:07]  *** Contents of shared directory: ***
[2025-11-25 00:40:07] total 1304336
[2025-11-25 00:40:07] -rw-r--r--. 2 boinc boinc 410893075 Nov 24 04:45 ATLAS.root_0
[2025-11-25 00:40:07] -rw-r--r--. 2 boinc boinc     15847 Nov 24 04:45 start_atlas.sh
[2025-11-25 00:40:07] -rw-r--r--. 2 boinc boinc    590093 Nov 24 04:45 input.tar.gz
[2025-11-25 00:40:07] -rw-------. 1 boinc boinc 912314552 Nov 25 00:36 HITS.pool.root.1
[2025-11-25 00:40:07] -rw-------. 1 boinc boinc  11816960 Nov 25 00:40 result.tar.gz
00:40:08 (23928): run_atlas exited; CPU time 336608.540319
00:40:08 (23928): called boinc_finish(0)

</stderr_txt>
]]>

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