Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:33:25 (736889): wrapper (7.7.26015): starting
04:33:25 (736889): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 04:33:25] Arguments: --nthreads 4
[2025-11-21 04:33:25] Threads: 4
[2025-11-21 04:33:25] Checking for CVMFS
[2025-11-21 04:33:25] No cvmfs_config command found, will try listing directly
[2025-11-21 04:33:25] CVMFS is ok
[2025-11-21 04:33:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 04:33:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 04:33:25] Further information can be found at the LHC@home message board.
[2025-11-21 04:33:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 04:33:25] Checking for apptainer binary...
[2025-11-21 04:33:25] which: no apptainer in ((null))
[2025-11-21 04:33:25] apptainer is not installed, using version from CVMFS
[2025-11-21 04:33:25] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 04:33:25] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot112/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2025-11-21 04:33:25] apptainer works
[2025-11-21 04:33:25] Set ATHENA_PROC_NUMBER=4
[2025-11-21 04:33:25] Set ATHENA_CORE_NUMBER=4
[2025-11-21 04:33:25] Starting ATLAS job with PandaID=6893868226
[2025-11-21 04:33:25] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot112/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 20:43:28]  *** The last 200 lines of the pilot log: ***
[2025-11-21 20:43:28] 2025-11-21 19:38:26,178 | INFO     | monitor loop #3821: job 0:6893868226 is in state 'finished'
[2025-11-21 20:43:28] 2025-11-21 19:38:26,179 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 20:43:28] 2025-11-21 19:38:26,640 | INFO     | time since job start (57885s) is within the limit (172800.0s)
[2025-11-21 20:43:28] 2025-11-21 19:38:27,609 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 20:43:28] 2025-11-21 19:38:27,631 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2663.2805859374994
[2025-11-21 20:43:28] 2025-11-21 19:38:27,655 | INFO     | using path: /scratch/boinc/var/slot112/slots/0/PanDA_Pilot-6893868226/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 20:43:28] 2025-11-21 19:38:27,656 | INFO     | extracted standard info from prmon json
[2025-11-21 20:43:28] 2025-11-21 19:38:27,656 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 20:43:28] 2025-11-21 19:38:27,656 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 20:43:28] 2025-11-21 19:38:27,672 | INFO     | fitting pss+swap vs Time
[2025-11-21 20:43:28] 2025-11-21 19:38:27,673 | INFO     | sum of square deviations: 265022315903.49063
[2025-11-21 20:43:28] 2025-11-21 19:38:27,694 | INFO     | sum of deviations: 480987643131.3928
[2025-11-21 20:43:28] 2025-11-21 19:38:27,694 | INFO     | mean x: 1763724970.1001053
[2025-11-21 20:43:28] 2025-11-21 19:38:27,694 | INFO     | mean y: 2278437.0695468914
[2025-11-21 20:43:28] 2025-11-21 19:38:27,694 | INFO     | intersect: -3198696973.6553373
[2025-11-21 20:43:28] 2025-11-21 19:38:27,695 | INFO     | chi2: 4.467819462672991
[2025-11-21 20:43:28] 2025-11-21 19:38:27,697 | INFO     | sum of square deviations: 260855457448.43695
[2025-11-21 20:43:28] 2025-11-21 19:38:27,717 | INFO     | sum of deviations: 691669657856.4244
[2025-11-21 20:43:28] 2025-11-21 19:38:27,717 | INFO     | mean x: 1763724817.6006355
[2025-11-21 20:43:28] 2025-11-21 19:38:27,717 | INFO     | mean y: 2286141.9586864407
[2025-11-21 20:43:28] 2025-11-21 19:38:27,718 | INFO     | intersect: -4674307374.908237
[2025-11-21 20:43:28] 2025-11-21 19:38:27,719 | INFO     | chi2: 2.076828382026733
[2025-11-21 20:43:28] 2025-11-21 19:38:27,719 | INFO     | current chi2=2.076828382026733 (change=53.51583922810937 %)
[2025-11-21 20:43:28] 2025-11-21 19:38:27,720 | INFO     | sum of square deviations: 256732506793.3896
[2025-11-21 20:43:28] 2025-11-21 19:38:27,739 | INFO     | sum of deviations: 727414423348.9419
[2025-11-21 20:43:28] 2025-11-21 19:38:27,739 | INFO     | mean x: 1763724665.1011715
[2025-11-21 20:43:28] 2025-11-21 19:38:27,739 | INFO     | mean y: 2287461.0532481363
[2025-11-21 20:43:28] 2025-11-21 19:38:27,739 | INFO     | intersect: -4994971266.464884
[2025-11-21 20:43:28] 2025-11-21 19:38:27,740 | INFO     | chi2: 1.9514963394391092
[2025-11-21 20:43:28] 2025-11-21 19:38:27,740 | INFO     | current chi2=1.9514963394391092 (change=6.034780903047693 %)
[2025-11-21 20:43:28] 2025-11-21 19:38:27,740 | INFO     | right removable region: 938
[2025-11-21 20:43:28] 2025-11-21 19:38:27,741 | INFO     | sum of square deviations: 260855399498.43695
[2025-11-21 20:43:28] 2025-11-21 19:38:27,763 | INFO     | sum of deviations: 311936485217.6434
[2025-11-21 20:43:28] 2025-11-21 19:38:27,763 | INFO     | mean x: 1763725122.6006355
[2025-11-21 20:43:28] 2025-11-21 19:38:27,763 | INFO     | mean y: 2284612.2616525423
[2025-11-21 20:43:28] 2025-11-21 19:38:27,763 | INFO     | intersect: -2106815742.5400739
[2025-11-21 20:43:28] 2025-11-21 19:38:27,764 | INFO     | chi2: 2.6417369550600114
[2025-11-21 20:43:28] 2025-11-21 19:38:27,764 | INFO     | current chi2=2.6417369550600114 (change=40.87189562759274 %)
[2025-11-21 20:43:28] 2025-11-21 19:38:27,766 | INFO     | sum of square deviations: 256732390893.38965
[2025-11-21 20:43:28] 2025-11-21 19:38:27,786 | INFO     | sum of deviations: 301265945831.2558
[2025-11-21 20:43:28] 2025-11-21 19:38:27,786 | INFO     | mean x: 1763725275.1011715
[2025-11-21 20:43:28] 2025-11-21 19:38:27,786 | INFO     | mean y: 2285006.3130990416
[2025-11-21 20:43:28] 2025-11-21 19:38:27,786 | INFO     | intersect: -2067381237.750721
[2025-11-21 20:43:28] 2025-11-21 19:38:27,787 | INFO     | chi2: 2.639466127380704
[2025-11-21 20:43:28] 2025-11-21 19:38:27,788 | INFO     | current chi2=2.639466127380704 (change=0.08595964389860854 %)
[2025-11-21 20:43:28] 2025-11-21 19:38:27,788 | INFO     | left removable region: 20
[2025-11-21 20:43:28] 2025-11-21 19:38:27,789 | INFO     | sum of square deviations: 239890106947.66885
[2025-11-21 20:43:28] 2025-11-21 19:38:27,808 | INFO     | sum of deviations: 542794207874.0025
[2025-11-21 20:43:28] 2025-11-21 19:38:27,808 | INFO     | mean x: 1763725244.6034858
[2025-11-21 20:43:28] 2025-11-21 19:38:27,809 | INFO     | mean y: 2294259.936819172
[2025-11-21 20:43:28] 2025-11-21 19:38:27,809 | INFO     | intersect: -3988449081.8082848
[2025-11-21 20:43:28] 2025-11-21 19:38:27,810 | INFO     | chi2: 0.10344454993656797
[2025-11-21 20:43:28] 2025-11-21 19:38:27,810 | INFO     | current memory leak: 2.26 B/s (using 918 data points, chi2=0.10)
[2025-11-21 20:43:28] 2025-11-21 19:38:27,811 | INFO     | could have reported an average CPU frequency of 2679 MHz (35 samples)
[2025-11-21 20:43:28] 2025-11-21 19:38:27,811 | INFO     | ..............................
[2025-11-21 20:43:28] 2025-11-21 19:38:27,811 | INFO     | . Timing measurements:
[2025-11-21 20:43:28] 2025-11-21 19:38:27,811 | INFO     | . get job = 0 s
[2025-11-21 20:43:28] 2025-11-21 19:38:27,811 | INFO     | . initial setup = 1 s
[2025-11-21 20:43:28] 2025-11-21 19:38:27,811 | INFO     | . payload setup = 9 s
[2025-11-21 20:43:28] 2025-11-21 19:38:27,811 | INFO     | . stage-in = 0 s
[2025-11-21 20:43:28] 2025-11-21 19:38:27,811 | INFO     | . payload execution = 57836 s
[2025-11-21 20:43:28] 2025-11-21 19:38:27,812 | INFO     | . stage-out = 5 s
[2025-11-21 20:43:28] 2025-11-21 19:38:27,812 | INFO     | . log creation = 0 s
[2025-11-21 20:43:28] 2025-11-21 19:38:27,812 | INFO     | ..............................
[2025-11-21 20:43:28] 2025-11-21 19:38:27,907 | INFO     | 
[2025-11-21 20:43:28] 2025-11-21 19:38:27,907 | INFO     | job summary report
[2025-11-21 20:43:28] 2025-11-21 19:38:27,907 | INFO     | --------------------------------------------------
[2025-11-21 20:43:28] 2025-11-21 19:38:27,907 | INFO     | PanDA job id: 6893868226
[2025-11-21 20:43:28] 2025-11-21 19:38:27,908 | INFO     | task id: 47523449
[2025-11-21 20:43:28] 2025-11-21 19:38:27,908 | INFO     | errors: (none)
[2025-11-21 20:43:28] 2025-11-21 19:38:27,908 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 20:43:28] 2025-11-21 19:38:27,908 | INFO     | pilot state: finished 
[2025-11-21 20:43:28] 2025-11-21 19:38:27,908 | INFO     | transexitcode: 0
[2025-11-21 20:43:28] 2025-11-21 19:38:27,908 | INFO     | exeerrorcode: 0
[2025-11-21 20:43:28] 2025-11-21 19:38:27,908 | INFO     | exeerrordiag: 
[2025-11-21 20:43:28] 2025-11-21 19:38:27,908 | INFO     | exitcode: 0
[2025-11-21 20:43:28] 2025-11-21 19:38:27,908 | INFO     | exitmsg: OK
[2025-11-21 20:43:28] 2025-11-21 19:38:27,908 | INFO     | cpuconsumptiontime: 224646 s
[2025-11-21 20:43:28] 2025-11-21 19:38:27,908 | INFO     | nevents: 1000
[2025-11-21 20:43:28] 2025-11-21 19:38:27,908 | INFO     | neventsw: 0
[2025-11-21 20:43:28] 2025-11-21 19:38:27,908 | INFO     | pid: 748839
[2025-11-21 20:43:28] 2025-11-21 19:38:27,909 | INFO     | pgrp: 748839
[2025-11-21 20:43:28] 2025-11-21 19:38:27,909 | INFO     | corecount: 4
[2025-11-21 20:43:28] 2025-11-21 19:38:27,909 | INFO     | event service: False
[2025-11-21 20:43:28] 2025-11-21 19:38:27,909 | INFO     | sizes: {0: 2298818, 7: 2299080, 11: 2299108, 57849: 2353172, 57850: 2353171, 57855: 2362245, 57859: 2362429, 57868: 2362675}
[2025-11-21 20:43:28] 2025-11-21 19:38:27,909 | INFO     | --------------------------------------------------
[2025-11-21 20:43:28] 2025-11-21 19:38:27,909 | INFO     | 
[2025-11-21 20:43:28] 2025-11-21 19:38:27,909 | INFO     | executing command: ls -lF /scratch/boinc/var/slot112/slots/0
[2025-11-21 20:43:28] 2025-11-21 19:38:27,935 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 20:43:28] 2025-11-21 19:38:27,936 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 20:43:28] 2025-11-21 19:38:27,936 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 20:43:28] 2025-11-21 19:38:27,936 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 20:43:28] 2025-11-21 19:38:27,936 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 20:43:28] 2025-11-21 19:38:27,936 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 20:43:28] 2025-11-21 19:38:27,936 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 20:43:28] 2025-11-21 19:38:27,936 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 20:43:28] 2025-11-21 19:38:27,936 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 20:43:28] 2025-11-21 19:38:27,937 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 20:43:28] 2025-11-21 19:38:27,937 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 20:43:28] 2025-11-21 19:38:27,937 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 20:43:28] 2025-11-21 19:38:27,937 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 20:43:28] 2025-11-21 19:38:27,937 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 20:43:28] 2025-11-21 19:38:27,937 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 20:43:28] 2025-11-21 19:38:27,937 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 20:43:28] 2025-11-21 19:38:27,937 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 20:43:28] 2025-11-21 19:38:27,938 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 20:43:28] 2025-11-21 19:38:27,938 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 20:43:28] 2025-11-21 19:38:27,938 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 20:43:28] 2025-11-21 19:38:27,938 | INFO     | job 6893868226 has completed (purged errors)
[2025-11-21 20:43:28] 2025-11-21 19:38:27,938 | INFO     | overall cleanup function is called
[2025-11-21 20:43:28] 2025-11-21 19:38:28,957 | INFO     | --- collectZombieJob: --- 10, [748839]
[2025-11-21 20:43:28] 2025-11-21 19:38:28,958 | INFO     | zombie collector waiting for pid 748839
[2025-11-21 20:43:28] 2025-11-21 19:38:28,958 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 20:43:28] 2025-11-21 19:38:28,958 | INFO     | collected zombie processes
[2025-11-21 20:43:28] 2025-11-21 19:38:28,958 | INFO     | will attempt to kill all subprocesses of pid=748839
[2025-11-21 20:43:28] 2025-11-21 19:38:29,694 | INFO     | process IDs to be killed: [748839] (in reverse order)
[2025-11-21 20:43:28] 2025-11-21 19:38:29,934 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 20:43:28] 2025-11-21 19:38:29,934 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 20:43:28] 2025-11-21 19:38:29,964 | INFO     | did not find any defunct processes belonging to 748839
[2025-11-21 20:43:28] 2025-11-21 19:38:29,993 | INFO     | did not find any defunct processes belonging to 748839
[2025-11-21 20:43:28] 2025-11-21 19:38:29,994 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 20:43:28] 2025-11-21 19:38:29,994 | INFO     | ready for new job
[2025-11-21 20:43:28] 2025-11-21 19:38:29,994 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 20:43:28] 2025-11-21 19:38:30,000 | INFO     | ***************************************
[2025-11-21 20:43:28] 2025-11-21 19:38:30,000 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 20:43:28] 2025-11-21 19:38:30,000 | INFO     | ***************************************
[2025-11-21 20:43:28] 2025-11-21 19:38:30,000 | INFO     | 
[2025-11-21 20:43:28] 2025-11-21 19:38:30,008 | INFO     | architecture information:
[2025-11-21 20:43:28] 2025-11-21 19:38:30,009 | INFO     | executing command: cat /etc/os-release
[2025-11-21 20:43:28] 2025-11-21 19:38:30,030 | INFO     | cat /etc/os-release:
[2025-11-21 20:43:28] NAME="CentOS Linux"
[2025-11-21 20:43:28] VERSION="7 (Core)"
[2025-11-21 20:43:28] ID="centos"
[2025-11-21 20:43:28] ID_LIKE="rhel fedora"
[2025-11-21 20:43:28] VERSION_ID="7"
[2025-11-21 20:43:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 20:43:28] ANSI_COLOR="0;31"
[2025-11-21 20:43:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 20:43:28] HOME_URL="https://www.centos.org/"
[2025-11-21 20:43:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 20:43:28] 
[2025-11-21 20:43:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 20:43:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 20:43:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 20:43:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 20:43:28] 
[2025-11-21 20:43:28] 2025-11-21 19:38:30,030 | INFO     | ***************************************
[2025-11-21 20:43:28] 2025-11-21 19:38:30,533 | INFO     | executing command: df -mP /scratch/boinc/var/slot112/slots/0
[2025-11-21 20:43:28] 2025-11-21 19:38:30,555 | INFO     | sufficient remaining disk space (3308429246464 B)
[2025-11-21 20:43:28] 2025-11-21 19:38:30,556 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 20:43:28] 2025-11-21 19:38:30,556 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 20:43:28] 2025-11-21 19:38:30,556 | INFO     | update_server=False
[2025-11-21 20:43:28] 2025-11-21 19:38:30,556 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 20:43:28] 2025-11-21 19:38:30,556 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 20:43:28] 2025-11-21 19:38:30,557 | INFO     | aborting loop
[2025-11-21 20:43:28] 2025-11-21 19:38:30,672 | INFO     | all data control threads have been joined
[2025-11-21 20:43:28] 2025-11-21 19:38:30,744 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 20:43:28] 2025-11-21 19:38:30,913 | INFO     | all job control threads have been joined
[2025-11-21 20:43:28] 2025-11-21 19:38:31,561 | INFO     | [job] retrieve thread has finished
[2025-11-21 20:43:28] 2025-11-21 19:38:31,562 | INFO     | [job] job monitor thread has finished
[2025-11-21 20:43:28] 2025-11-21 19:38:31,655 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 20:43:28] 2025-11-21 19:38:31,677 | INFO     | [data] control thread has finished
[2025-11-21 20:43:28] 2025-11-21 19:38:31,724 | INFO     | [job] validate thread has finished
[2025-11-21 20:43:28] 2025-11-21 19:38:31,918 | INFO     | [job] control thread has finished
[2025-11-21 20:43:28] 2025-11-21 19:38:31,928 | INFO     | [payload] failed_post thread has finished
[2025-11-21 20:43:28] 2025-11-21 19:38:32,017 | INFO     | all payload control threads have been joined
[2025-11-21 20:43:28] 2025-11-21 19:38:32,087 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 20:43:28] 2025-11-21 19:38:32,442 | INFO     | [data] copytool_in thread has finished
[2025-11-21 20:43:28] 2025-11-21 19:38:32,551 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 20:43:28] 2025-11-21 19:38:32,750 | INFO     | [data] copytool_out thread has finished
[2025-11-21 20:43:28] 2025-11-21 19:38:32,836 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 20:43:28] 2025-11-21 19:38:32,917 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 20:43:28] 2025-11-21 19:38:33,022 | INFO     | [payload] control thread has finished
[2025-11-21 20:43:28] 2025-11-21 19:38:33,066 | INFO     | [payload] validate_post thread has finished
[2025-11-21 20:43:28] 2025-11-21 19:38:33,466 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 20:43:28] 2025-11-21 19:38:33,922 | INFO     | [job] queue monitor thread has finished
[2025-11-21 20:43:28] 2025-11-21 19:38:37,473 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 20:43:28] 2025-11-21 19:39:00,779 | INFO     | PID=741461 has CPU usage=12.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 20:43:28] 2025-11-21 19:39:00,779 | INFO     | .. there are 8 such processes running
[2025-11-21 20:43:28] 2025-11-21 19:39:00,779 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 20:43:28] 2025-11-21 19:39:00,779 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 20:43:28] 2025-11-21 19:39:00,779 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 20:43:28] 2025-11-21 19:39:18,237 | INFO     | [monitor] cgroup control has ended
[2025-11-21 20:43:28] 2025-11-21 19:39:19,403 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22365373409088)>', '<ExcThread(monitor, started 22365136193280)>']
[2025-11-21 20:43:28] 2025-11-21 19:39:19,869 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 20:43:28] 2025-11-21 19:39:19,870 | INFO     | [monitor] control thread has ended
[2025-11-21 20:43:28] 2025-11-21 19:39:24,427 | INFO     | all workflow threads have been joined
[2025-11-21 20:43:28] 2025-11-21 19:39:24,428 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 20:43:28] 2025-11-21 19:39:24,428 | INFO     | traces error code: 0
[2025-11-21 20:43:28] 2025-11-21 19:39:24,428 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 20:43:28] 2025-11-21 19:39:24,591 [wrapper] ==== pilot stdout END ====
[2025-11-21 20:43:28] 2025-11-21 19:39:24,594 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 20:43:28] 2025-11-21 19:39:24,598 [wrapper] pilotpid: 741461
[2025-11-21 20:43:28] 2025-11-21 19:39:24,602 [wrapper] Pilot exit status: 0
[2025-11-21 20:43:28] 2025-11-21 19:39:24,615 [wrapper] pandaids: 6893868226
[2025-11-21 20:43:28] 2025-11-21 19:39:24,780 [wrapper] cleanup supervisor_pilot 2252448 741462
[2025-11-21 20:43:28] 2025-11-21 19:39:24,784 [wrapper] Test setup, not cleaning
[2025-11-21 20:43:28] 2025-11-21 19:39:24,787 [wrapper] apfmon messages muted
[2025-11-21 20:43:28] 2025-11-21 19:39:24,791 [wrapper] ==== wrapper stdout END ====
[2025-11-21 20:43:28] 2025-11-21 19:39:24,794 [wrapper] ==== wrapper stderr END ====
[2025-11-21 20:43:28]  *** Error codes and diagnostics ***
[2025-11-21 20:43:28]     "exeErrorCode": 0,
[2025-11-21 20:43:28]     "exeErrorDiag": "",
[2025-11-21 20:43:28]     "pilotErrorCode": 0,
[2025-11-21 20:43:28]     "pilotErrorDiag": "",
[2025-11-21 20:43:28]  *** Listing of results directory ***
[2025-11-21 20:43:28] total 1318072
[2025-11-21 20:43:28] -rw-r--r-- 1 boinc boinc    576529 Nov 20 15:06 pilot3.tar.gz
[2025-11-21 20:43:28] -rwx------ 1 boinc boinc     36292 Nov 20 15:41 runpilot2-wrapper.sh
[2025-11-21 20:43:28] -rw-r--r-- 1 boinc boinc      5112 Nov 20 15:41 queuedata.json
[2025-11-21 20:43:28] -rw-r--r-- 1 boinc boinc       100 Nov 21 02:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 20:43:28] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 02:54 run_atlas
[2025-11-21 20:43:28] -rw-r--r-- 1 boinc boinc       105 Nov 21 02:54 job.xml
[2025-11-21 20:43:28] -rw-r--r-- 2 boinc boinc 408159421 Nov 21 04:33 EVNT.47493127._000631.pool.root.1
[2025-11-21 20:43:28] -rw-r--r-- 1 boinc boinc      6686 Nov 21 04:33 init_data.xml
[2025-11-21 20:43:28] -rw-r--r-- 2 boinc boinc     15847 Nov 21 04:33 start_atlas.sh
[2025-11-21 20:43:28] drwxrwx--x 2 boinc boinc      4096 Nov 21 04:33 shared
[2025-11-21 20:43:28] -rw-r--r-- 2 boinc boinc    590096 Nov 21 04:33 input.tar.gz
[2025-11-21 20:43:28] -rw-r--r-- 1 boinc boinc         0 Nov 21 04:33 boinc_lockfile
[2025-11-21 20:43:28] -rw-r--r-- 1 boinc boinc      2785 Nov 21 04:33 pandaJob.out
[2025-11-21 20:43:28] -rw------- 1 boinc boinc    989817 Nov 21 04:33 agis_schedconf.cvmfs.json
[2025-11-21 20:43:28] drwx------ 5 boinc boinc      4096 Nov 21 04:33 pilot3
[2025-11-21 20:43:28] -rw-r--r-- 1 boinc boinc       532 Nov 21 20:29 boinc_task_state.xml
[2025-11-21 20:43:28] -rw------- 1 boinc boinc 918556086 Nov 21 20:37 HITS.47523449._006310.pool.root.1
[2025-11-21 20:43:28] -rw------- 1 boinc boinc      1039 Nov 21 20:38 memory_monitor_summary.json
[2025-11-21 20:43:28] -rw------- 1 boinc boinc   1526164 Nov 21 20:38 agis_ddmendpoints.agis.ALL.json
[2025-11-21 20:43:28] -rw------- 1 boinc boinc   1673925 Nov 21 20:38 log.47523449._006310.job.log.tgz.1
[2025-11-21 20:43:28] -rw------- 1 boinc boinc        95 Nov 21 20:38 pilot_heartbeat.json
[2025-11-21 20:43:28] -rw------- 1 boinc boinc      8591 Nov 21 20:38 heartbeat.json
[2025-11-21 20:43:28] -rw------- 1 boinc boinc      4835 Nov 21 20:39 pilotlog.txt
[2025-11-21 20:43:28] -rw------- 1 boinc boinc   7859510 Nov 21 20:39 log.47523449._006310.job.log.1
[2025-11-21 20:43:28] -rw------- 1 boinc boinc       353 Nov 21 20:39 output.list
[2025-11-21 20:43:28] -rw-r--r-- 1 boinc boinc       620 Nov 21 20:39 runtime_log
[2025-11-21 20:43:28] -rw------- 1 boinc boinc   9553920 Nov 21 20:39 result.tar.gz
[2025-11-21 20:43:28] -rw------- 1 boinc boinc       671 Nov 21 20:39 yVfKDmU1Kg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmB7HKDmUo43Pm.diag
[2025-11-21 20:43:28] -rw-r--r-- 1 boinc boinc      9223 Nov 21 20:39 runtime_log.err
[2025-11-21 20:43:28] -rw-r--r-- 1 boinc boinc        28 Nov 21 20:43 wrapper_checkpoint.txt
[2025-11-21 20:43:28] -rw-r--r-- 1 boinc boinc      8192 Nov 21 20:43 boinc_mmap_file
[2025-11-21 20:43:28] -rw-r--r-- 1 boinc boinc     21126 Nov 21 20:43 stderr.txt
[2025-11-21 20:43:28] HITS file was successfully produced:
[2025-11-21 20:43:28] -rw------- 1 boinc boinc 918556086 Nov 21 20:37 shared/HITS.pool.root.1
[2025-11-21 20:43:28]  *** Contents of shared directory: ***
[2025-11-21 20:43:28] total 1305560
[2025-11-21 20:43:28] -rw-r--r-- 2 boinc boinc 408159421 Nov 21 04:33 ATLAS.root_0
[2025-11-21 20:43:28] -rw-r--r-- 2 boinc boinc     15847 Nov 21 04:33 start_atlas.sh
[2025-11-21 20:43:28] -rw-r--r-- 2 boinc boinc    590096 Nov 21 04:33 input.tar.gz
[2025-11-21 20:43:28] -rw------- 1 boinc boinc 918556086 Nov 21 20:37 HITS.pool.root.1
[2025-11-21 20:43:28] -rw------- 1 boinc boinc   9553920 Nov 21 20:39 result.tar.gz
20:43:29 (736889): run_atlas exited; CPU time 227458.177095
20:43:29 (736889): called boinc_finish(0)

</stderr_txt>
]]>

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