Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:12:45 (4076419): wrapper (7.7.26015): starting
17:12:45 (4076419): wrapper: running run_atlas (--nthreads 12)
[2025-11-20 17:12:45] Arguments: --nthreads 12
[2025-11-20 17:12:45] Threads: 12
[2025-11-20 17:12:45] Checking for CVMFS
[2025-11-20 17:12:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 17:12:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 17:12:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 17:12:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 17:12:45] 2.11.5.0 158711 20411 363776 153102 3 437 42281287 45568000 16468 130560 0 185858313 99.814 107660124 30827 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-20 17:12:45] CVMFS is ok
[2025-11-20 17:12:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 17:12:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 17:12:45] Further information can be found at the LHC@home message board.
[2025-11-20 17:12:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 17:12:45] Checking for apptainer binary...
[2025-11-20 17:12:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 17:12:45] Running /usr/bin/apptainer --version
[2025-11-20 17:12:45] apptainer version 1.4.1-1.el9
[2025-11-20 17:12:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 17:12:46] wns0067.triumf.lcg
[2025-11-20 17:12:46] apptainer works
[2025-11-20 17:12:46] Set ATHENA_PROC_NUMBER=12
[2025-11-20 17:12:46] Set ATHENA_CORE_NUMBER=12
[2025-11-20 17:12:46] Starting ATLAS job with PandaID=6893881387
[2025-11-20 17:12:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 17:17:02]  *** The last 200 lines of the pilot log: ***
[2025-11-20 17:17:02] 2025-11-21 01:16:11,208 | WARNING  | wrong length of table data, x=[1763687601.0], y=[894.0] (must be same and length>=4)
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | could have reported an average CPU frequency of 2690 MHz (4 samples)
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | ..............................
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | . Timing measurements:
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | . get job = 0 s
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | . initial setup = 2 s
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | . payload setup = 5 s
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | . stage-in = 0 s
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | . payload execution = 49 s
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | . stage-out = 0 s
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | . log creation = 0 s
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | ..............................
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893881387/pilotlog.txt
[2025-11-20 17:17:02] 2025-11-21 01:16:11,219 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-20 17:17:02] - Log from pilotlog.txt -
[2025-11-20 17:17:02] 2025-11-21 01:16:11,206 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893881387/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 17:17:02] 2025-11-21 01:16:11,207 | INFO     | extracted standard info from prmon json
[2025-11-20 17:17:02] 2025-11-21 01:16:11,207 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 17:17:02] 2025-11-21 01:16:11,207 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 17:17:02] 2025-11-21 01:16:11,207 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 17:17:02] 2025-11-21 01:16:11,207 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 17:17:02] 2025-11-21 01:16:11,208 | WARNING  | wrong length of table data, x=[1763687601.0], y=[894.0] (must be same and length>=4)
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | could have reported an average CPU frequency of 2690 MHz (4 samples)
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | ..............................
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | . Timing measurements:
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | . get job = 0 s
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | . initial setup = 2 s
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | . payload setup = 5 s
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | . stage-in = 0 s
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | . payload execution = 49 s
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | . stage-out = 0 s
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | . log creation = 0 s
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | ..............................
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893881387/pilotlog.txt
[2025-11-20 17:17:02] 2025-11-21 01:16:11,219 | WARNING  | 
[2025-11-20 17:17:02] [begin log extracts]
[2025-11-20 17:17:02] - Log from pilotlog.txt -
[2025-11-20 17:17:02] 2025-11-21 01:16:11,206 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893881387/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 17:17:02] 2025-11-21 01:16:11,207 | INFO     | extracted standard info from prmon json
[2025-11-20 17:17:02] 2025-11-21 01:16:11,207 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 17:17:02] 2025-11-21 01:16:11,207 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 17:17:02] 2025-11-21 01:16:11,207 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 17:17:02] 2025-11-21 01:16:11,207 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 17:17:02] 2025-11-21 01:16:11,208 | WARNING  | wrong length of table data, x=[1763687601.0], y=[894.0] (must be same and length>=4)
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | could have reported an average CPU frequency of 2690 MHz (4 samples)
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | ..............................
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | . Timing measurements:
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | . get job = 0 s
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | . initial setup = 2 s
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | . payload setup = 5 s
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | . stage-in = 0 s
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | . payload execution = 49 s
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | . stage-out = 0 s
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | . log creation = 0 s
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | ..............................
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 17:17:02] 2025-11-21 01:16:11,209 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893881387/pilotlog.txt
[2025-11-20 17:17:02] [end log extracts]
[2025-11-20 17:17:02] 2025-11-21 01:16:11,219 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-20 17:17:02] 2025-11-21 01:16:11,220 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-20 17:17:02] 2025-11-21 01:16:11,320 | INFO     | time since job start (195s) is within the limit (172800.0s)
[2025-11-20 17:17:02] 2025-11-21 01:16:11,740 | INFO     | 
[2025-11-20 17:17:02] 2025-11-21 01:16:11,741 | INFO     | job summary report
[2025-11-20 17:17:02] 2025-11-21 01:16:11,741 | INFO     | --------------------------------------------------
[2025-11-20 17:17:02] 2025-11-21 01:16:11,741 | INFO     | PanDA job id: 6893881387
[2025-11-20 17:17:02] 2025-11-21 01:16:11,741 | INFO     | task id: 47523449
[2025-11-20 17:17:02] 2025-11-21 01:16:11,741 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-20 17:14:01,341 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-20 17:17:02] 2025-11-21 01:16:11,741 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-20 17:17:02] 2025-11-21 01:16:11,741 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 17:17:02] 2025-11-21 01:16:11,741 | INFO     | pilot state: failed 
[2025-11-20 17:17:02] 2025-11-21 01:16:11,741 | INFO     | transexitcode: 65
[2025-11-20 17:17:02] 2025-11-21 01:16:11,741 | INFO     | exeerrorcode: 65
[2025-11-20 17:17:02] 2025-11-21 01:16:11,741 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-20 17:17:02] 2025-11-21 01:16:11,741 | INFO     | exitcode: 65
[2025-11-20 17:17:02] 2025-11-21 01:16:11,741 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-20 17:17:02] 2025-11-21 01:16:11,741 | INFO     | cpuconsumptiontime: 41 s
[2025-11-20 17:17:02] 2025-11-21 01:16:11,741 | INFO     | nevents: 0
[2025-11-20 17:17:02] 2025-11-21 01:16:11,741 | INFO     | neventsw: 0
[2025-11-20 17:17:02] 2025-11-21 01:16:11,741 | INFO     | pid: 4087101
[2025-11-20 17:17:02] 2025-11-21 01:16:11,741 | INFO     | pgrp: 4087101
[2025-11-20 17:17:02] 2025-11-21 01:16:11,742 | INFO     | corecount: 12
[2025-11-20 17:17:02] 2025-11-21 01:16:11,742 | INFO     | event service: False
[2025-11-20 17:17:02] 2025-11-21 01:16:11,742 | INFO     | sizes: {0: 2298582, 1: 2298781, 4: 2299043, 11: 2299071, 58: 2324576, 59: 2329022, 180: 2329160}
[2025-11-20 17:17:02] 2025-11-21 01:16:11,742 | INFO     | --------------------------------------------------
[2025-11-20 17:17:02] 2025-11-21 01:16:11,742 | INFO     | 
[2025-11-20 17:17:02] 2025-11-21 01:16:11,742 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-20 17:17:02] 2025-11-21 01:16:11,756 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 17:17:02] 2025-11-21 01:16:11,756 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 17:17:02] 2025-11-21 01:16:11,757 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 17:17:02] 2025-11-21 01:16:11,757 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 17:17:02] 2025-11-21 01:16:11,757 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 17:17:02] 2025-11-21 01:16:11,757 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 17:17:02] 2025-11-21 01:16:11,757 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 17:17:02] 2025-11-21 01:16:11,757 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 17:17:02] 2025-11-21 01:16:11,757 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 17:17:02] 2025-11-21 01:16:11,757 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 17:17:02] 2025-11-21 01:16:11,757 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 17:17:02] 2025-11-21 01:16:11,757 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 17:17:02] 2025-11-21 01:16:11,757 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 17:17:02] 2025-11-21 01:16:11,757 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 17:17:02] 2025-11-21 01:16:11,757 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 17:17:02] 2025-11-21 01:16:11,757 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 17:17:02] 2025-11-21 01:16:11,757 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 17:17:02] 2025-11-21 01:16:11,757 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 17:17:02] 2025-11-21 01:16:11,757 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 17:17:02] 2025-11-21 01:16:11,757 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 17:17:02] 2025-11-21 01:16:11,757 | INFO     | job 6893881387 has completed (purged errors)
[2025-11-20 17:17:02] 2025-11-21 01:16:11,758 | INFO     | overall cleanup function is called
[2025-11-20 17:17:02] 2025-11-21 01:16:12,766 | INFO     | --- collectZombieJob: --- 10, [4087101]
[2025-11-20 17:17:02] 2025-11-21 01:16:12,766 | INFO     | zombie collector waiting for pid 4087101
[2025-11-20 17:17:02] 2025-11-21 01:16:12,766 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 17:17:02] 2025-11-21 01:16:12,766 | INFO     | collected zombie processes
[2025-11-20 17:17:02] 2025-11-21 01:16:12,766 | INFO     | will attempt to kill all subprocesses of pid=4087101
[2025-11-20 17:17:02] 2025-11-21 01:16:12,972 | INFO     | process IDs to be killed: [4087101] (in reverse order)
[2025-11-20 17:17:02] 2025-11-21 01:16:13,047 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 17:17:02] 2025-11-21 01:16:13,047 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 17:17:02] 2025-11-21 01:16:13,056 | INFO     | did not find any defunct processes belonging to 4087101
[2025-11-20 17:17:02] 2025-11-21 01:16:13,064 | INFO     | did not find any defunct processes belonging to 4087101
[2025-11-20 17:17:02] 2025-11-21 01:16:13,065 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 17:17:02] 2025-11-21 01:16:13,065 | INFO     | ready for new job
[2025-11-20 17:17:02] 2025-11-21 01:16:13,065 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 17:17:02] 2025-11-21 01:16:13,067 | INFO     | ***************************************
[2025-11-20 17:17:02] 2025-11-21 01:16:13,067 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 17:17:02] 2025-11-21 01:16:13,067 | INFO     | ***************************************
[2025-11-20 17:17:02] 2025-11-21 01:16:13,067 | INFO     | 
[2025-11-20 17:17:02] 2025-11-21 01:16:13,069 | INFO     | architecture information:
[2025-11-20 17:17:02] 2025-11-21 01:16:13,070 | INFO     | executing command: cat /etc/os-release
[2025-11-20 17:17:02] 2025-11-21 01:16:13,084 | INFO     | cat /etc/os-release:
[2025-11-20 17:17:02] NAME="CentOS Linux"
[2025-11-20 17:17:02] VERSION="7 (Core)"
[2025-11-20 17:17:02] ID="centos"
[2025-11-20 17:17:02] ID_LIKE="rhel fedora"
[2025-11-20 17:17:02] VERSION_ID="7"
[2025-11-20 17:17:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 17:17:02] ANSI_COLOR="0;31"
[2025-11-20 17:17:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 17:17:02] HOME_URL="https://www.centos.org/"
[2025-11-20 17:17:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 17:17:02] 
[2025-11-20 17:17:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 17:17:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 17:17:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 17:17:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 17:17:02] 
[2025-11-20 17:17:02] 2025-11-21 01:16:13,084 | INFO     | ***************************************
[2025-11-20 17:17:02] 2025-11-21 01:16:13,587 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-20 17:17:02] 2025-11-21 01:16:13,599 | INFO     | sufficient remaining disk space (2035237781504 B)
[2025-11-20 17:17:02] 2025-11-21 01:16:13,599 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 17:17:02] 2025-11-21 01:16:13,599 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 17:17:02] 2025-11-21 01:16:13,599 | INFO     | update_server=False
[2025-11-20 17:17:02] 2025-11-21 01:16:13,599 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 17:17:02] 2025-11-21 01:16:13,600 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 17:17:02] 2025-11-21 01:16:13,600 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 17:17:02] 2025-11-21 01:16:13,604 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 17:17:02] 2025-11-21 01:16:13,605 | INFO     | aborting loop
[2025-11-20 17:17:02] 2025-11-21 01:16:13,626 | INFO     | all data control threads have been joined
[2025-11-20 17:17:02] 2025-11-21 01:16:13,980 | INFO     | all job control threads have been joined
[2025-11-20 17:17:02] 2025-11-21 01:16:14,605 | INFO     | [job] retrieve thread has finished
[2025-11-20 17:17:02] 2025-11-21 01:16:14,610 | INFO     | [job] job monitor thread has finished
[2025-11-20 17:17:02] 2025-11-21 01:16:14,633 | INFO     | [data] control thread has finished
[2025-11-20 17:17:02] 2025-11-21 01:16:14,725 | INFO     | all payload control threads have been joined
[2025-11-20 17:17:02] 2025-11-21 01:16:14,853 | INFO     | [payload] failed_post thread has finished
[2025-11-20 17:17:02] 2025-11-21 01:16:14,985 | INFO     | [job] control thread has finished
[2025-11-20 17:17:02] 2025-11-21 01:16:15,395 | INFO     | [data] copytool_in thread has finished
[2025-11-20 17:17:02] 2025-11-21 01:16:15,606 | INFO     | [data] copytool_out thread has finished
[2025-11-20 17:17:02] 2025-11-21 01:16:15,607 | INFO     | [payload] validate_post thread has finished
[2025-11-20 17:17:02] 2025-11-21 01:16:15,723 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 17:17:02] 2025-11-21 01:16:15,731 | INFO     | [payload] control thread has finished
[2025-11-20 17:17:02] 2025-11-21 01:16:15,763 | INFO     | [job] validate thread has finished
[2025-11-20 17:17:02] 2025-11-21 01:16:15,908 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 17:17:02] 2025-11-21 01:16:15,947 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 17:17:02] 2025-11-21 01:16:16,018 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 17:17:02] 2025-11-21 01:16:16,289 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 17:17:02] 2025-11-21 01:16:17,293 | INFO     | [job] queue monitor thread has finished
[2025-11-20 17:17:02] 2025-11-21 01:16:17,607 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 17:17:02] 2025-11-21 01:16:44,649 | INFO     | PID=4080241 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 17:17:02] 2025-11-21 01:16:44,649 | INFO     | .. there are 42 such processes running
[2025-11-20 17:17:02] 2025-11-21 01:16:44,649 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 17:17:02] 2025-11-21 01:16:44,649 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 17:17:02] 2025-11-21 01:16:44,649 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 17:17:02] 2025-11-21 01:16:56,130 | INFO     | [monitor] cgroup control has ended
[2025-11-20 17:17:02] 2025-11-21 01:16:57,545 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140485402109760)>', '<ExcThread(monitor, started 140484857018112)>']
[2025-11-20 17:17:02] 2025-11-21 01:16:57,715 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 17:17:02] 2025-11-21 01:16:57,715 | INFO     | [monitor] control thread has ended
[2025-11-20 17:17:02] 2025-11-21 01:17:02,570 | INFO     | all workflow threads have been joined
[2025-11-20 17:17:02] 2025-11-21 01:17:02,571 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 17:17:02] 2025-11-21 01:17:02,571 | INFO     | traces error code: 0
[2025-11-20 17:17:02] 2025-11-21 01:17:02,571 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 17:17:02] 2025-11-21 01:17:02,685 [wrapper] ==== pilot stdout END ====
[2025-11-20 17:17:02] 2025-11-21 01:17:02,687 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 17:17:02] 2025-11-21 01:17:02,691 [wrapper] pilotpid: 4080241
[2025-11-20 17:17:02] 2025-11-21 01:17:02,693 [wrapper] Pilot exit status: 0
[2025-11-20 17:17:02] 2025-11-21 01:17:02,701 [wrapper] pandaids: 6893881387
[2025-11-20 17:17:02] 2025-11-21 01:17:02,750 [wrapper] cleanup supervisor_pilot 4080247 4080242
[2025-11-20 17:17:02] 2025-11-21 01:17:02,752 [wrapper] Test setup, not cleaning
[2025-11-20 17:17:02] 2025-11-21 01:17:02,755 [wrapper] apfmon messages muted
[2025-11-20 17:17:02] 2025-11-21 01:17:02,757 [wrapper] ==== wrapper stdout END ====
[2025-11-20 17:17:02] 2025-11-21 01:17:02,758 [wrapper] ==== wrapper stderr END ====
[2025-11-20 17:17:02]  *** Error codes and diagnostics ***
[2025-11-20 17:17:02]     "exeErrorCode": 65,
[2025-11-20 17:17:02]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-20 17:17:02]     "pilotErrorCode": 1305,
[2025-11-20 17:17:02]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-20 17:17:02]  *** Listing of results directory ***
[2025-11-20 17:17:02] total 401572
[2025-11-20 17:17:02] -rw-r--r--. 1 boinc boinc    576529 Nov 20 11:10 pilot3.tar.gz
[2025-11-20 17:17:02] -rw-r--r--. 1 boinc boinc      5112 Nov 20 11:58 queuedata.json
[2025-11-20 17:17:02] -rwx------. 1 boinc boinc     36292 Nov 20 11:58 runpilot2-wrapper.sh
[2025-11-20 17:17:02] -rw-r--r--. 1 boinc boinc       100 Nov 20 17:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 17:17:02] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 17:12 run_atlas
[2025-11-20 17:17:02] -rw-r--r--. 1 boinc boinc       105 Nov 20 17:12 job.xml
[2025-11-20 17:17:02] -rw-r--r--. 1 boinc boinc      6595 Nov 20 17:12 init_data.xml
[2025-11-20 17:17:02] -rw-r--r--. 2 boinc boinc 407008632 Nov 20 17:12 EVNT.47493127._000860.pool.root.1
[2025-11-20 17:17:02] -rw-r--r--. 2 boinc boinc     15847 Nov 20 17:12 start_atlas.sh
[2025-11-20 17:17:02] drwxrwx--x. 2 boinc boinc      4096 Nov 20 17:12 shared
[2025-11-20 17:17:02] -rw-r--r--. 2 boinc boinc    590099 Nov 20 17:12 input.tar.gz
[2025-11-20 17:17:02] -rw-r--r--. 1 boinc boinc         0 Nov 20 17:12 boinc_lockfile
[2025-11-20 17:17:02] -rw-r--r--. 1 boinc boinc      2785 Nov 20 17:12 pandaJob.out
[2025-11-20 17:17:02] -rw-------. 1 boinc boinc    989817 Nov 20 17:12 agis_schedconf.cvmfs.json
[2025-11-20 17:17:02] -rw-------. 1 boinc boinc   1526164 Nov 20 17:12 agis_ddmendpoints.agis.ALL.json
[2025-11-20 17:17:02] drwx------. 5 boinc boinc      4096 Nov 20 17:12 pilot3
[2025-11-20 17:17:02] -rw-r--r--. 1 boinc boinc       523 Nov 20 17:13 boinc_task_state.xml
[2025-11-20 17:17:02] -rw-------. 1 boinc boinc       986 Nov 20 17:14 memory_monitor_summary.json
[2025-11-20 17:17:02] -rw-------. 1 boinc boinc     49050 Nov 20 17:14 log.47523449._008600.job.log.tgz.1
[2025-11-20 17:17:02] -rw-------. 1 boinc boinc        95 Nov 20 17:15 pilot_heartbeat.json
[2025-11-20 17:17:02] -rw-------. 1 boinc boinc     10326 Nov 20 17:16 heartbeat.json
[2025-11-20 17:17:02] -rw-r--r--. 1 boinc boinc      8192 Nov 20 17:16 boinc_mmap_file
[2025-11-20 17:17:02] -rw-r--r--. 1 boinc boinc        23 Nov 20 17:16 wrapper_checkpoint.txt
[2025-11-20 17:17:02] -rw-------. 1 boinc boinc      4823 Nov 20 17:17 pilotlog.txt
[2025-11-20 17:17:02] -rw-------. 1 boinc boinc     92875 Nov 20 17:17 log.47523449._008600.job.log.1
[2025-11-20 17:17:02] -rw-------. 1 boinc boinc       186 Nov 20 17:17 output.list
[2025-11-20 17:17:02] -rw-r--r--. 1 boinc boinc       620 Nov 20 17:17 runtime_log
[2025-11-20 17:17:02] -rw-------. 1 boinc boinc    163840 Nov 20 17:17 result.tar.gz
[2025-11-20 17:17:02] -rw-------. 1 boinc boinc       647 Nov 20 17:17 taSKDmPyPg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm92GKDmkxwmHo.diag
[2025-11-20 17:17:02] -rw-r--r--. 1 boinc boinc      8636 Nov 20 17:17 runtime_log.err
[2025-11-20 17:17:02] -rw-r--r--. 1 boinc boinc     22407 Nov 20 17:17 stderr.txt
[2025-11-20 17:17:02] No HITS result produced
[2025-11-20 17:17:02]  *** Contents of shared directory: ***
[2025-11-20 17:17:02] total 398232
[2025-11-20 17:17:02] -rw-r--r--. 2 boinc boinc 407008632 Nov 20 17:12 ATLAS.root_0
[2025-11-20 17:17:02] -rw-r--r--. 2 boinc boinc     15847 Nov 20 17:12 start_atlas.sh
[2025-11-20 17:17:02] -rw-r--r--. 2 boinc boinc    590099 Nov 20 17:12 input.tar.gz
[2025-11-20 17:17:02] -rw-------. 1 boinc boinc    163840 Nov 20 17:17 result.tar.gz
17:17:04 (4076419): run_atlas exited; CPU time 40.629349
17:17:04 (4076419): called boinc_finish(0)

</stderr_txt>
]]>

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