Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:35:17 (25148): wrapper (7.7.26015): starting
00:35:17 (25148): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 00:35:17] Arguments: --nthreads 8
[2025-11-24 00:35:17] Threads: 8
[2025-11-24 00:35:17] Checking for CVMFS
[2025-11-24 00:35:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:35:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:35:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:35:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:35:19] 2.11.2.0 32703 281543 140624 153226 3 180 16703588 25165825 4632 130560 2 137729868 99.875 77522947 3032 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 00:35:19] CVMFS is ok
[2025-11-24 00:35:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:35:19] Checking for apptainer binary...
[2025-11-24 00:35:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:35:19] Running /usr/bin/apptainer --version
[2025-11-24 00:35:19] apptainer version 1.3.2-1.el7
[2025-11-24 00:35:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:35:37] cg-vwn328.simple-grid.lan
[2025-11-24 00:35:37] apptainer works
[2025-11-24 00:35:37] Set ATHENA_PROC_NUMBER=8
[2025-11-24 00:35:37] Set ATHENA_CORE_NUMBER=8
[2025-11-24 00:35:37] Starting ATLAS job with PandaID=6893867240
[2025-11-24 00:35:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 22:19:07]  *** The last 200 lines of the pilot log: ***
[2025-11-24 22:19:07] 2025-11-24 21:18:12,179 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 22:19:07] 2025-11-24 21:18:14,162 | INFO     | time since job start (77912s) is within the limit (172800.0s)
[2025-11-24 22:19:07] 2025-11-24 21:18:14,162 | INFO     | 77927s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-24 22:19:07] 2025-11-24 21:18:14,687 | INFO     | monitor loop #5219: job 0:6893867240 is in state 'finished'
[2025-11-24 22:19:07] 2025-11-24 21:18:14,687 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 22:19:07] 2025-11-24 21:18:16,169 | INFO     | time since job start (77914s) is within the limit (172800.0s)
[2025-11-24 22:19:07] 2025-11-24 21:18:17,200 | INFO     | monitor loop #5220: job 0:6893867240 is in state 'finished'
[2025-11-24 22:19:07] 2025-11-24 21:18:17,200 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 22:19:07] 2025-11-24 21:18:18,182 | INFO     | time since job start (77916s) is within the limit (172800.0s)
[2025-11-24 22:19:07] 2025-11-24 21:18:19,450 | INFO     | PID=28912 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 22:19:07] 2025-11-24 21:18:19,451 | INFO     | .. there are 9 such processes running
[2025-11-24 22:19:07] 2025-11-24 21:18:19,711 | INFO     | monitor loop #5221: job 0:6893867240 is in state 'finished'
[2025-11-24 22:19:07] 2025-11-24 21:18:19,711 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 22:19:07] 2025-11-24 21:18:20,452 | INFO     | time since job start (77918s) is within the limit (172800.0s)
[2025-11-24 22:19:07] 2025-11-24 21:18:21,280 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 22:19:07] 2025-11-24 21:18:21,281 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 22:19:07] 2025-11-24 21:18:21,283 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6893867240/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 22:19:07] 2025-11-24 21:18:21,284 | INFO     | extracted standard info from prmon json
[2025-11-24 22:19:07] 2025-11-24 21:18:21,284 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 22:19:07] 2025-11-24 21:18:21,284 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 22:19:07] 2025-11-24 21:18:21,307 | INFO     | fitting pss+swap vs Time
[2025-11-24 22:19:07] 2025-11-24 21:18:21,310 | INFO     | sum of square deviations: 630674388567.8672
[2025-11-24 22:19:07] 2025-11-24 21:18:21,358 | INFO     | sum of deviations: 2771044416208.9907
[2025-11-24 22:19:07] 2025-11-24 21:18:21,359 | INFO     | mean x: 1763980331.0497239
[2025-11-24 22:19:07] 2025-11-24 21:18:21,359 | INFO     | mean y: 2824222.5714285714
[2025-11-24 22:19:07] 2025-11-24 21:18:21,359 | INFO     | intersect: -7747717000.067451
[2025-11-24 22:19:07] 2025-11-24 21:18:21,361 | INFO     | chi2: 25.713345617030626
[2025-11-24 22:19:07] 2025-11-24 21:18:21,363 | INFO     | sum of square deviations: 623237622209.8363
[2025-11-24 22:19:07] 2025-11-24 21:18:21,408 | INFO     | sum of deviations: 3186643602847.8115
[2025-11-24 22:19:07] 2025-11-24 21:18:21,408 | INFO     | mean x: 1763980178.5538828
[2025-11-24 22:19:07] 2025-11-24 21:18:21,408 | INFO     | mean y: 2832743.7527733757
[2025-11-24 22:19:07] 2025-11-24 21:18:21,408 | INFO     | intersect: -9016481802.130806
[2025-11-24 22:19:07] 2025-11-24 21:18:21,410 | INFO     | chi2: 22.46502680603208
[2025-11-24 22:19:07] 2025-11-24 21:18:21,410 | INFO     | current chi2=22.46502680603208 (change=12.632812778929479 %)
[2025-11-24 22:19:07] 2025-11-24 21:18:21,410 | INFO     | right removable region: 1261
[2025-11-24 22:19:07] 2025-11-24 21:18:21,412 | INFO     | sum of square deviations: 623236810909.8362
[2025-11-24 22:19:07] 2025-11-24 21:18:21,457 | INFO     | sum of deviations: 2249664195749.8115
[2025-11-24 22:19:07] 2025-11-24 21:18:21,457 | INFO     | mean x: 1763980483.5538828
[2025-11-24 22:19:07] 2025-11-24 21:18:21,458 | INFO     | mean y: 2834912.171949287
[2025-11-24 22:19:07] 2025-11-24 21:18:21,458 | INFO     | intersect: -6364509998.118841
[2025-11-24 22:19:07] 2025-11-24 21:18:21,459 | INFO     | chi2: 21.1133775972655
[2025-11-24 22:19:07] 2025-11-24 21:18:21,459 | INFO     | current chi2=21.1133775972655 (change=17.889418546602684 %)
[2025-11-24 22:19:07] 2025-11-24 21:18:21,460 | INFO     | left removable region: 10
[2025-11-24 22:19:07] 2025-11-24 21:18:21,461 | INFO     | sum of square deviations: 607081405862.0101
[2025-11-24 22:19:07] 2025-11-24 21:18:21,519 | INFO     | sum of deviations: 2297916526804.9326
[2025-11-24 22:19:07] 2025-11-24 21:18:21,519 | INFO     | mean x: 1763980453.0631495
[2025-11-24 22:19:07] 2025-11-24 21:18:21,519 | INFO     | mean y: 2854953.924860112
[2025-11-24 22:19:07] 2025-11-24 21:18:21,520 | INFO     | intersect: -6674140580.634506
[2025-11-24 22:19:07] 2025-11-24 21:18:21,521 | INFO     | chi2: 13.623536744516702
[2025-11-24 22:19:07] 2025-11-24 21:18:21,521 | INFO     | current memory leak: 3.79 B/s (using 1251 data points, chi2=13.62)
[2025-11-24 22:19:07] 2025-11-24 21:18:21,523 | INFO     | could have reported an average CPU frequency of 1999 MHz (43 samples)
[2025-11-24 22:19:07] 2025-11-24 21:18:21,523 | INFO     | ..............................
[2025-11-24 22:19:07] 2025-11-24 21:18:21,523 | INFO     | . Timing measurements:
[2025-11-24 22:19:07] 2025-11-24 21:18:21,523 | INFO     | . get job = 0 s
[2025-11-24 22:19:07] 2025-11-24 21:18:21,523 | INFO     | . initial setup = 15 s
[2025-11-24 22:19:07] 2025-11-24 21:18:21,523 | INFO     | . payload setup = 161 s
[2025-11-24 22:19:07] 2025-11-24 21:18:21,523 | INFO     | . stage-in = 0 s
[2025-11-24 22:19:07] 2025-11-24 21:18:21,523 | INFO     | . payload execution = 77447 s
[2025-11-24 22:19:07] 2025-11-24 21:18:21,523 | INFO     | . stage-out = 5 s
[2025-11-24 22:19:07] 2025-11-24 21:18:21,524 | INFO     | . log creation = 2 s
[2025-11-24 22:19:07] 2025-11-24 21:18:21,524 | INFO     | ..............................
[2025-11-24 22:19:07] 2025-11-24 21:18:21,637 | INFO     | 
[2025-11-24 22:19:07] 2025-11-24 21:18:21,637 | INFO     | job summary report
[2025-11-24 22:19:07] 2025-11-24 21:18:21,637 | INFO     | --------------------------------------------------
[2025-11-24 22:19:07] 2025-11-24 21:18:21,637 | INFO     | PanDA job id: 6893867240
[2025-11-24 22:19:07] 2025-11-24 21:18:21,637 | INFO     | task id: 47523449
[2025-11-24 22:19:07] 2025-11-24 21:18:21,638 | INFO     | errors: (none)
[2025-11-24 22:19:07] 2025-11-24 21:18:21,638 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 22:19:07] 2025-11-24 21:18:21,638 | INFO     | pilot state: finished 
[2025-11-24 22:19:07] 2025-11-24 21:18:21,638 | INFO     | transexitcode: 0
[2025-11-24 22:19:07] 2025-11-24 21:18:21,638 | INFO     | exeerrorcode: 0
[2025-11-24 22:19:07] 2025-11-24 21:18:21,638 | INFO     | exeerrordiag: 
[2025-11-24 22:19:07] 2025-11-24 21:18:21,638 | INFO     | exitcode: 0
[2025-11-24 22:19:07] 2025-11-24 21:18:21,638 | INFO     | exitmsg: OK
[2025-11-24 22:19:07] 2025-11-24 21:18:21,638 | INFO     | cpuconsumptiontime: 342086 s
[2025-11-24 22:19:07] 2025-11-24 21:18:21,638 | INFO     | nevents: 1000
[2025-11-24 22:19:07] 2025-11-24 21:18:21,638 | INFO     | neventsw: 0
[2025-11-24 22:19:07] 2025-11-24 21:18:21,639 | INFO     | pid: 3130
[2025-11-24 22:19:07] 2025-11-24 21:18:21,639 | INFO     | pgrp: 3130
[2025-11-24 22:19:07] 2025-11-24 21:18:21,639 | INFO     | corecount: 8
[2025-11-24 22:19:07] 2025-11-24 21:18:21,639 | INFO     | event service: False
[2025-11-24 22:19:07] 2025-11-24 21:18:21,639 | INFO     | sizes: {0: 2298635, 1: 2298834, 12: 2298834, 23: 2298862, 33: 2298890, 44: 2298946, 55: 2299102, 66: 2299130, 76: 2299158, 87: 2299214, 98: 2299242, 102: 2299812, 
[2025-11-24 22:19:07] 2025-11-24 21:18:21,639 | INFO     | --------------------------------------------------
[2025-11-24 22:19:07] 2025-11-24 21:18:21,639 | INFO     | 
[2025-11-24 22:19:07] 2025-11-24 21:18:21,639 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-24 22:19:07] 2025-11-24 21:18:22,060 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 22:19:07] 2025-11-24 21:18:22,060 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 22:19:07] 2025-11-24 21:18:22,061 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 22:19:07] 2025-11-24 21:18:22,061 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 22:19:07] 2025-11-24 21:18:22,061 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 22:19:07] 2025-11-24 21:18:22,061 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 22:19:07] 2025-11-24 21:18:22,061 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 22:19:07] 2025-11-24 21:18:22,061 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 22:19:07] 2025-11-24 21:18:22,061 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 22:19:07] 2025-11-24 21:18:22,061 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 22:19:07] 2025-11-24 21:18:22,062 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 22:19:07] 2025-11-24 21:18:22,062 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 22:19:07] 2025-11-24 21:18:22,062 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 22:19:07] 2025-11-24 21:18:22,062 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 22:19:07] 2025-11-24 21:18:22,062 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 22:19:07] 2025-11-24 21:18:22,062 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 22:19:07] 2025-11-24 21:18:22,062 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 22:19:07] 2025-11-24 21:18:22,062 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 22:19:07] 2025-11-24 21:18:22,062 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 22:19:07] 2025-11-24 21:18:22,063 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 22:19:07] 2025-11-24 21:18:22,063 | INFO     | job 6893867240 has completed (purged errors)
[2025-11-24 22:19:07] 2025-11-24 21:18:22,063 | INFO     | overall cleanup function is called
[2025-11-24 22:19:07] 2025-11-24 21:18:23,079 | INFO     | --- collectZombieJob: --- 10, [3130]
[2025-11-24 22:19:07] 2025-11-24 21:18:23,079 | INFO     | zombie collector waiting for pid 3130
[2025-11-24 22:19:07] 2025-11-24 21:18:23,079 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 22:19:07] 2025-11-24 21:18:23,080 | INFO     | collected zombie processes
[2025-11-24 22:19:07] 2025-11-24 21:18:23,080 | INFO     | will attempt to kill all subprocesses of pid=3130
[2025-11-24 22:19:07] 2025-11-24 21:18:23,192 | INFO     | process IDs to be killed: [3130] (in reverse order)
[2025-11-24 22:19:07] 2025-11-24 21:18:23,400 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 22:19:07] 2025-11-24 21:18:23,400 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 22:19:07] 2025-11-24 21:18:23,404 | INFO     | did not find any defunct processes belonging to 3130
[2025-11-24 22:19:07] 2025-11-24 21:18:23,407 | INFO     | did not find any defunct processes belonging to 3130
[2025-11-24 22:19:07] 2025-11-24 21:18:23,436 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 22:19:07] 2025-11-24 21:18:23,437 | INFO     | ready for new job
[2025-11-24 22:19:07] 2025-11-24 21:18:23,437 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 22:19:07] 2025-11-24 21:18:23,442 | INFO     | ***************************************
[2025-11-24 22:19:07] 2025-11-24 21:18:23,442 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 22:19:07] 2025-11-24 21:18:23,442 | INFO     | ***************************************
[2025-11-24 22:19:07] 2025-11-24 21:18:23,442 | INFO     | 
[2025-11-24 22:19:07] 2025-11-24 21:18:23,443 | INFO     | pilot is running in a VM
[2025-11-24 22:19:07] 2025-11-24 21:18:23,443 | INFO     | architecture information:
[2025-11-24 22:19:07] 2025-11-24 21:18:23,451 | INFO     | executing command: cat /etc/os-release
[2025-11-24 22:19:07] 2025-11-24 21:18:23,631 | INFO     | cat /etc/os-release:
[2025-11-24 22:19:07] NAME="CentOS Linux"
[2025-11-24 22:19:07] VERSION="7 (Core)"
[2025-11-24 22:19:07] ID="centos"
[2025-11-24 22:19:07] ID_LIKE="rhel fedora"
[2025-11-24 22:19:07] VERSION_ID="7"
[2025-11-24 22:19:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 22:19:07] ANSI_COLOR="0;31"
[2025-11-24 22:19:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 22:19:07] HOME_URL="https://www.centos.org/"
[2025-11-24 22:19:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 22:19:07] 
[2025-11-24 22:19:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 22:19:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 22:19:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 22:19:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 22:19:07] 
[2025-11-24 22:19:07] 2025-11-24 21:18:23,632 | INFO     | ***************************************
[2025-11-24 22:19:07] 2025-11-24 21:18:24,135 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-24 22:19:07] 2025-11-24 21:18:24,374 | INFO     | sufficient remaining disk space (494964572160 B)
[2025-11-24 22:19:07] 2025-11-24 21:18:24,375 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 22:19:07] 2025-11-24 21:18:24,375 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 22:19:07] 2025-11-24 21:18:24,375 | INFO     | update_server=False
[2025-11-24 22:19:07] 2025-11-24 21:18:24,375 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 22:19:07] 2025-11-24 21:18:24,729 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 22:19:07] 2025-11-24 21:18:24,729 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 22:19:07] 2025-11-24 21:18:24,729 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 22:19:07] 2025-11-24 21:18:24,729 | INFO     | will abort loop
[2025-11-24 22:19:07] 2025-11-24 21:18:25,088 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 22:19:07] 2025-11-24 21:18:25,129 | INFO     | all job control threads have been joined
[2025-11-24 22:19:07] 2025-11-24 21:18:25,381 | INFO     | [job] retrieve thread has finished
[2025-11-24 22:19:07] 2025-11-24 21:18:25,465 | INFO     | all data control threads have been joined
[2025-11-24 22:19:07] 2025-11-24 21:18:25,601 | INFO     | [payload] failed_post thread has finished
[2025-11-24 22:19:07] 2025-11-24 21:18:25,638 | INFO     | all payload control threads have been joined
[2025-11-24 22:19:07] 2025-11-24 21:18:25,735 | INFO     | [job] job monitor thread has finished
[2025-11-24 22:19:07] 2025-11-24 21:18:25,909 | INFO     | [payload] validate_post thread has finished
[2025-11-24 22:19:07] 2025-11-24 21:18:26,110 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 22:19:07] 2025-11-24 21:18:26,135 | INFO     | [job] control thread has finished
[2025-11-24 22:19:07] 2025-11-24 21:18:26,139 | INFO     | [job] validate thread has finished
[2025-11-24 22:19:07] 2025-11-24 21:18:26,471 | INFO     | [data] control thread has finished
[2025-11-24 22:19:07] 2025-11-24 21:18:26,644 | INFO     | [payload] control thread has finished
[2025-11-24 22:19:07] 2025-11-24 21:18:26,651 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 22:19:07] 2025-11-24 21:18:26,659 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 22:19:07] 2025-11-24 21:18:26,775 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 22:19:07] 2025-11-24 21:18:26,807 | INFO     | [data] copytool_in thread has finished
[2025-11-24 22:19:07] 2025-11-24 21:18:26,836 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 22:19:07] 2025-11-24 21:18:27,095 | INFO     | [data] copytool_out thread has finished
[2025-11-24 22:19:07] 2025-11-24 21:18:27,657 | INFO     | [job] queue monitor thread has finished
[2025-11-24 22:19:07] 2025-11-24 21:18:27,779 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 22:19:07] 2025-11-24 21:18:31,792 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 22:19:07] 2025-11-24 21:18:53,715 | INFO     | PID=28912 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 22:19:07] 2025-11-24 21:18:53,715 | INFO     | .. there are 9 such processes running
[2025-11-24 22:19:07] 2025-11-24 21:18:53,717 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 22:19:07] 2025-11-24 21:18:53,717 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 22:19:07] 2025-11-24 21:18:53,717 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 22:19:07] 2025-11-24 21:18:57,355 | INFO     | [monitor] cgroup control has ended
[2025-11-24 22:19:07] 2025-11-24 21:18:57,974 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139749113235264)>', '<ExcThread(monitor, started 139748664387328)>']
[2025-11-24 22:19:07] 2025-11-24 21:18:58,747 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 22:19:07] 2025-11-24 21:18:58,747 | INFO     | [monitor] control thread has ended
[2025-11-24 22:19:07] 2025-11-24 21:19:03,000 | INFO     | all workflow threads have been joined
[2025-11-24 22:19:07] 2025-11-24 21:19:03,000 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 22:19:07] 2025-11-24 21:19:03,000 | INFO     | traces error code: 0
[2025-11-24 22:19:07] 2025-11-24 21:19:03,001 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 22:19:07] 2025-11-24 21:19:03,367 [wrapper] ==== pilot stdout END ====
[2025-11-24 22:19:07] 2025-11-24 21:19:03,417 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 22:19:07] 2025-11-24 21:19:03,488 [wrapper] pilotpid: 28912
[2025-11-24 22:19:07] 2025-11-24 21:19:03,603 [wrapper] Pilot exit status: 0
[2025-11-24 22:19:07] 2025-11-24 21:19:03,999 [wrapper] pandaids: 6893867240
[2025-11-24 22:19:07] 2025-11-24 21:19:04,741 [wrapper] cleanup supervisor_pilot   745 28913
[2025-11-24 22:19:07] 2025-11-24 21:19:04,828 [wrapper] Test setup, not cleaning
[2025-11-24 22:19:07] 2025-11-24 21:19:04,871 [wrapper] apfmon messages muted
[2025-11-24 22:19:07] 2025-11-24 21:19:04,906 [wrapper] ==== wrapper stdout END ====
[2025-11-24 22:19:07] 2025-11-24 21:19:04,940 [wrapper] ==== wrapper stderr END ====
[2025-11-24 22:19:07]  *** Error codes and diagnostics ***
[2025-11-24 22:19:07]     "exeErrorCode": 0,
[2025-11-24 22:19:07]     "exeErrorDiag": "",
[2025-11-24 22:19:07]     "pilotErrorCode": 0,
[2025-11-24 22:19:07]     "pilotErrorDiag": "",
[2025-11-24 22:19:07]  *** Listing of results directory ***
[2025-11-24 22:19:07] total 1322736
[2025-11-24 22:19:07] -rw-r--r--. 1 boinc boinc    576529 Nov 20 15:06 pilot3.tar.gz
[2025-11-24 22:19:07] -rw-r--r--. 1 boinc boinc      5112 Nov 20 15:31 queuedata.json
[2025-11-24 22:19:07] -rwx------. 1 boinc boinc     36292 Nov 20 15:32 runpilot2-wrapper.sh
[2025-11-24 22:19:07] -rw-r--r--. 1 boinc boinc       100 Nov 24 00:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 22:19:07] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 00:35 run_atlas
[2025-11-24 22:19:07] -rw-r--r--. 1 boinc boinc       105 Nov 24 00:35 job.xml
[2025-11-24 22:19:07] -rw-r--r--. 1 boinc boinc      6392 Nov 24 00:35 init_data.xml
[2025-11-24 22:19:07] -rw-r--r--. 2 boinc boinc 410036189 Nov 24 00:35 EVNT.47493127._000616.pool.root.1
[2025-11-24 22:19:07] -rw-r--r--. 2 boinc boinc     15847 Nov 24 00:35 start_atlas.sh
[2025-11-24 22:19:07] drwxrwx--x. 2 boinc boinc        68 Nov 24 00:35 shared
[2025-11-24 22:19:07] -rw-r--r--. 2 boinc boinc    590102 Nov 24 00:35 input.tar.gz
[2025-11-24 22:19:07] -rw-r--r--. 1 boinc boinc         0 Nov 24 00:35 boinc_lockfile
[2025-11-24 22:19:07] -rw-r--r--. 1 boinc boinc      2785 Nov 24 00:35 pandaJob.out
[2025-11-24 22:19:07] -rw-------. 1 boinc boinc    989786 Nov 24 00:39 agis_schedconf.cvmfs.json
[2025-11-24 22:19:07] drwx------. 5 boinc boinc      4096 Nov 24 00:39 pilot3
[2025-11-24 22:19:07] -rw-r--r--. 1 boinc boinc       533 Nov 24 21:54 boinc_task_state.xml
[2025-11-24 22:19:07] -rw-------. 1 boinc boinc 915151986 Nov 24 22:15 HITS.47523449._006159.pool.root.1
[2025-11-24 22:19:07] -rw-------. 1 boinc boinc      1031 Nov 24 22:16 memory_monitor_summary.json
[2025-11-24 22:19:07] -rw-------. 1 boinc boinc   1516227 Nov 24 22:16 agis_ddmendpoints.agis.ALL.json
[2025-11-24 22:19:07] -rw-------. 1 boinc boinc   2383009 Nov 24 22:16 log.47523449._006159.job.log.tgz.1
[2025-11-24 22:19:07] -rw-------. 1 boinc boinc      8630 Nov 24 22:18 heartbeat.json
[2025-11-24 22:19:07] -rw-------. 1 boinc boinc        95 Nov 24 22:18 pilot_heartbeat.json
[2025-11-24 22:19:07] -rw-r--r--. 1 boinc boinc      8192 Nov 24 22:19 boinc_mmap_file
[2025-11-24 22:19:07] -rw-r--r--. 1 boinc boinc        29 Nov 24 22:19 wrapper_checkpoint.txt
[2025-11-24 22:19:07] -rw-------. 1 boinc boinc      5070 Nov 24 22:19 pilotlog.txt
[2025-11-24 22:19:07] -rw-------. 1 boinc boinc  10313813 Nov 24 22:19 log.47523449._006159.job.log.1
[2025-11-24 22:19:07] -rw-------. 1 boinc boinc       353 Nov 24 22:19 output.list
[2025-11-24 22:19:07] -rw-r--r--. 1 boinc boinc       620 Nov 24 22:19 runtime_log
[2025-11-24 22:19:07] -rw-------. 1 boinc boinc  12718080 Nov 24 22:19 result.tar.gz
[2025-11-24 22:19:07] -rw-------. 1 boinc boinc       662 Nov 24 22:19 vUDODmAtKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmj5HKDmL8E8fm.diag
[2025-11-24 22:19:07] -rw-r--r--. 1 boinc boinc      8817 Nov 24 22:19 runtime_log.err
[2025-11-24 22:19:07] -rw-r--r--. 1 boinc boinc     21504 Nov 24 22:19 stderr.txt
[2025-11-24 22:19:07] HITS file was successfully produced:
[2025-11-24 22:19:07] -rw-------. 1 boinc boinc 915151986 Nov 24 22:15 shared/HITS.pool.root.1
[2025-11-24 22:19:07]  *** Contents of shared directory: ***
[2025-11-24 22:19:07] total 1307148
[2025-11-24 22:19:07] -rw-r--r--. 2 boinc boinc 410036189 Nov 24 00:35 ATLAS.root_0
[2025-11-24 22:19:07] -rw-r--r--. 2 boinc boinc     15847 Nov 24 00:35 start_atlas.sh
[2025-11-24 22:19:07] -rw-r--r--. 2 boinc boinc    590102 Nov 24 00:35 input.tar.gz
[2025-11-24 22:19:07] -rw-------. 1 boinc boinc 915151986 Nov 24 22:15 HITS.pool.root.1
[2025-11-24 22:19:07] -rw-------. 1 boinc boinc  12718080 Nov 24 22:19 result.tar.gz
22:19:08 (25148): run_atlas exited; CPU time 342515.558477
22:19:08 (25148): called boinc_finish(0)

</stderr_txt>
]]>

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