Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:20:38 (959554): wrapper (7.7.26015): starting
17:20:38 (959554): wrapper: running run_atlas (--nthreads 12)
[2025-11-20 17:20:38] Arguments: --nthreads 12
[2025-11-20 17:20:38] Threads: 12
[2025-11-20 17:20:38] Checking for CVMFS
[2025-11-20 17:20:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 17:20:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 17:20:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 17:20:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 17:20:38] 2.11.3.0 1506499 20474 226056 153103 0 132 32294375 45568001 13939 130560 0 219123274 99.789 133338226 16933 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-20 17:20:38] CVMFS is ok
[2025-11-20 17:20:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 17:20:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 17:20:38] Further information can be found at the LHC@home message board.
[2025-11-20 17:20:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 17:20:38] Checking for apptainer binary...
[2025-11-20 17:20:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 17:20:38] Running /usr/bin/apptainer --version
[2025-11-20 17:20:38] apptainer version 1.4.1-1.el9
[2025-11-20 17:20:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 17:20:39] wns0169.triumf.lcg
[2025-11-20 17:20:39] apptainer works
[2025-11-20 17:20:39] Set ATHENA_PROC_NUMBER=12
[2025-11-20 17:20:39] Set ATHENA_CORE_NUMBER=12
[2025-11-20 17:20:39] Starting ATLAS job with PandaID=6893881109
[2025-11-20 17:20:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 17:26:24]  *** The last 200 lines of the pilot log: ***
[2025-11-20 17:26:24] 2025-11-21 01:25:51,153 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 17:26:24] 2025-11-21 01:25:51,153 | WARNING  | wrong length of table data, x=[1763688115.0, 1763688176.0], y=[1428.0, 354163.0] (must be same and length>=4)
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | could have reported an average CPU frequency of 2805 MHz (4 samples)
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | ..............................
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | . Timing measurements:
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | . get job = 0 s
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | . initial setup = 5 s
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | . payload setup = 13 s
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | . stage-in = 0 s
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | . payload execution = 119 s
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | . stage-out = 0 s
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | . log creation = 0 s
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | ..............................
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893881109/pilotlog.txt
[2025-11-20 17:26:24] 2025-11-21 01:25:51,167 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-20 17:26:24] - Log from pilotlog.txt -
[2025-11-20 17:26:24] 2025-11-21 01:25:51,152 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893881109/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 17:26:24] 2025-11-21 01:25:51,152 | INFO     | extracted standard info from prmon json
[2025-11-20 17:26:24] 2025-11-21 01:25:51,152 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 17:26:24] 2025-11-21 01:25:51,152 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 17:26:24] 2025-11-21 01:25:51,152 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 17:26:24] 2025-11-21 01:25:51,153 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 17:26:24] 2025-11-21 01:25:51,153 | WARNING  | wrong length of table data, x=[1763688115.0, 1763688176.0], y=[1428.0, 354163.0] (must be same and length>=4)
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | could have reported an average CPU frequency of 2805 MHz (4 samples)
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | ..............................
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | . Timing measurements:
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | . get job = 0 s
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | . initial setup = 5 s
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | . payload setup = 13 s
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | . stage-in = 0 s
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | . payload execution = 119 s
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | . stage-out = 0 s
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | . log creation = 0 s
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | ..............................
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893881109/pilotlog.txt
[2025-11-20 17:26:24] 2025-11-21 01:25:51,167 | WARNING  | 
[2025-11-20 17:26:24] [begin log extracts]
[2025-11-20 17:26:24] - Log from pilotlog.txt -
[2025-11-20 17:26:24] 2025-11-21 01:25:51,152 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893881109/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 17:26:24] 2025-11-21 01:25:51,152 | INFO     | extracted standard info from prmon json
[2025-11-20 17:26:24] 2025-11-21 01:25:51,152 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 17:26:24] 2025-11-21 01:25:51,152 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 17:26:24] 2025-11-21 01:25:51,152 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 17:26:24] 2025-11-21 01:25:51,153 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 17:26:24] 2025-11-21 01:25:51,153 | WARNING  | wrong length of table data, x=[1763688115.0, 1763688176.0], y=[1428.0, 354163.0] (must be same and length>=4)
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | could have reported an average CPU frequency of 2805 MHz (4 samples)
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | ..............................
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | . Timing measurements:
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | . get job = 0 s
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | . initial setup = 5 s
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | . payload setup = 13 s
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | . stage-in = 0 s
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | . payload execution = 119 s
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | . stage-out = 0 s
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | . log creation = 0 s
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | ..............................
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 17:26:24] 2025-11-21 01:25:51,154 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893881109/pilotlog.txt
[2025-11-20 17:26:24] [end log extracts]
[2025-11-20 17:26:24] 2025-11-21 01:25:51,167 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-20 17:26:24] 2025-11-21 01:25:51,168 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-20 17:26:24] 2025-11-21 01:25:51,556 | INFO     | 
[2025-11-20 17:26:24] 2025-11-21 01:25:51,556 | INFO     | job summary report
[2025-11-20 17:26:24] 2025-11-21 01:25:51,557 | INFO     | --------------------------------------------------
[2025-11-20 17:26:24] 2025-11-21 01:25:51,557 | INFO     | PanDA job id: 6893881109
[2025-11-20 17:26:24] 2025-11-21 01:25:51,557 | INFO     | task id: 47523449
[2025-11-20 17:26:24] 2025-11-21 01:25:51,557 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-20 17:23:37,710 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-20 17:26:24] 2025-11-21 01:25:51,557 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-20 17:26:24] 2025-11-21 01:25:51,557 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 17:26:24] 2025-11-21 01:25:51,557 | INFO     | pilot state: failed 
[2025-11-20 17:26:24] 2025-11-21 01:25:51,557 | INFO     | transexitcode: 65
[2025-11-20 17:26:24] 2025-11-21 01:25:51,557 | INFO     | exeerrorcode: 65
[2025-11-20 17:26:24] 2025-11-21 01:25:51,557 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-20 17:26:24] 2025-11-21 01:25:51,561 | INFO     | exitcode: 65
[2025-11-20 17:26:24] 2025-11-21 01:25:51,561 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-20 17:26:24] 2025-11-21 01:25:51,561 | INFO     | cpuconsumptiontime: 40 s
[2025-11-20 17:26:24] 2025-11-21 01:25:51,561 | INFO     | nevents: 0
[2025-11-20 17:26:24] 2025-11-21 01:25:51,561 | INFO     | neventsw: 0
[2025-11-20 17:26:24] 2025-11-21 01:25:51,562 | INFO     | pid: 969948
[2025-11-20 17:26:24] 2025-11-21 01:25:51,562 | INFO     | pgrp: 969948
[2025-11-20 17:26:24] 2025-11-21 01:25:51,562 | INFO     | corecount: 12
[2025-11-20 17:26:24] 2025-11-21 01:25:51,562 | INFO     | event service: False
[2025-11-20 17:26:24] 2025-11-21 01:25:51,562 | INFO     | sizes: {0: 2298582, 1: 2298781, 12: 2298781, 14: 2299071, 23: 2299099, 135: 2324655, 136: 2329077, 137: 2329077, 261: 2329243}
[2025-11-20 17:26:24] 2025-11-21 01:25:51,562 | INFO     | --------------------------------------------------
[2025-11-20 17:26:24] 2025-11-21 01:25:51,562 | INFO     | 
[2025-11-20 17:26:24] 2025-11-21 01:25:51,562 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-20 17:26:24] 2025-11-21 01:25:51,686 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 17:26:24] 2025-11-21 01:25:51,686 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 17:26:24] 2025-11-21 01:25:51,686 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 17:26:24] 2025-11-21 01:25:51,686 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 17:26:24] 2025-11-21 01:25:51,686 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 17:26:24] 2025-11-21 01:25:51,686 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 17:26:24] 2025-11-21 01:25:51,686 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 17:26:24] 2025-11-21 01:25:51,686 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 17:26:24] 2025-11-21 01:25:51,686 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 17:26:24] 2025-11-21 01:25:51,686 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 17:26:24] 2025-11-21 01:25:51,686 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 17:26:24] 2025-11-21 01:25:51,686 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 17:26:24] 2025-11-21 01:25:51,686 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 17:26:24] 2025-11-21 01:25:51,686 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 17:26:24] 2025-11-21 01:25:51,686 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 17:26:24] 2025-11-21 01:25:51,687 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 17:26:24] 2025-11-21 01:25:51,687 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 17:26:24] 2025-11-21 01:25:51,687 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 17:26:24] 2025-11-21 01:25:51,687 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 17:26:24] 2025-11-21 01:25:51,687 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 17:26:24] 2025-11-21 01:25:51,687 | INFO     | job 6893881109 has completed (purged errors)
[2025-11-20 17:26:24] 2025-11-21 01:25:51,687 | INFO     | overall cleanup function is called
[2025-11-20 17:26:24] 2025-11-21 01:25:52,715 | INFO     | --- collectZombieJob: --- 10, [969948]
[2025-11-20 17:26:24] 2025-11-21 01:25:52,715 | INFO     | zombie collector waiting for pid 969948
[2025-11-20 17:26:24] 2025-11-21 01:25:52,716 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 17:26:24] 2025-11-21 01:25:52,716 | INFO     | collected zombie processes
[2025-11-20 17:26:24] 2025-11-21 01:25:52,716 | INFO     | will attempt to kill all subprocesses of pid=969948
[2025-11-20 17:26:24] 2025-11-21 01:25:52,907 | INFO     | process IDs to be killed: [969948] (in reverse order)
[2025-11-20 17:26:24] 2025-11-21 01:25:52,968 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 17:26:24] 2025-11-21 01:25:52,969 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 17:26:24] 2025-11-21 01:25:52,998 | INFO     | did not find any defunct processes belonging to 969948
[2025-11-20 17:26:24] 2025-11-21 01:25:53,016 | INFO     | did not find any defunct processes belonging to 969948
[2025-11-20 17:26:24] 2025-11-21 01:25:53,017 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 17:26:24] 2025-11-21 01:25:53,017 | INFO     | ready for new job
[2025-11-20 17:26:24] 2025-11-21 01:25:53,017 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 17:26:24] 2025-11-21 01:25:53,018 | INFO     | ***************************************
[2025-11-20 17:26:24] 2025-11-21 01:25:53,019 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 17:26:24] 2025-11-21 01:25:53,019 | INFO     | ***************************************
[2025-11-20 17:26:24] 2025-11-21 01:25:53,019 | INFO     | 
[2025-11-20 17:26:24] 2025-11-21 01:25:53,020 | INFO     | architecture information:
[2025-11-20 17:26:24] 2025-11-21 01:25:53,021 | INFO     | executing command: cat /etc/os-release
[2025-11-20 17:26:24] 2025-11-21 01:25:53,034 | INFO     | cat /etc/os-release:
[2025-11-20 17:26:24] NAME="CentOS Linux"
[2025-11-20 17:26:24] VERSION="7 (Core)"
[2025-11-20 17:26:24] ID="centos"
[2025-11-20 17:26:24] ID_LIKE="rhel fedora"
[2025-11-20 17:26:24] VERSION_ID="7"
[2025-11-20 17:26:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 17:26:24] ANSI_COLOR="0;31"
[2025-11-20 17:26:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 17:26:24] HOME_URL="https://www.centos.org/"
[2025-11-20 17:26:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 17:26:24] 
[2025-11-20 17:26:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 17:26:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 17:26:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 17:26:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 17:26:24] 
[2025-11-20 17:26:24] 2025-11-21 01:25:53,035 | INFO     | ***************************************
[2025-11-20 17:26:24] 2025-11-21 01:25:53,538 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-20 17:26:24] 2025-11-21 01:25:53,596 | INFO     | sufficient remaining disk space (2467709321216 B)
[2025-11-20 17:26:24] 2025-11-21 01:25:53,597 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 17:26:24] 2025-11-21 01:25:53,597 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 17:26:24] 2025-11-21 01:25:53,597 | INFO     | update_server=False
[2025-11-20 17:26:24] 2025-11-21 01:25:53,597 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 17:26:24] 2025-11-21 01:25:54,332 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 17:26:24] 2025-11-21 01:25:54,332 | INFO     | aborting loop
[2025-11-20 17:26:24] 2025-11-21 01:25:54,542 | INFO     | all data control threads have been joined
[2025-11-20 17:26:24] 2025-11-21 01:25:54,564 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 17:26:24] 2025-11-21 01:25:54,603 | INFO     | [job] retrieve thread has finished
[2025-11-20 17:26:24] 2025-11-21 01:25:54,768 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 17:26:24] 2025-11-21 01:25:54,861 | INFO     | [payload] validate_post thread has finished
[2025-11-20 17:26:24] 2025-11-21 01:25:55,063 | INFO     | all payload control threads have been joined
[2025-11-20 17:26:24] 2025-11-21 01:25:55,137 | INFO     | all job control threads have been joined
[2025-11-20 17:26:24] 2025-11-21 01:25:55,338 | INFO     | [job] job monitor thread has finished
[2025-11-20 17:26:24] 2025-11-21 01:25:55,341 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 17:26:24] 2025-11-21 01:25:55,444 | INFO     | [payload] failed_post thread has finished
[2025-11-20 17:26:24] 2025-11-21 01:25:55,452 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 17:26:24] 2025-11-21 01:25:55,547 | INFO     | [data] control thread has finished
[2025-11-20 17:26:24] 2025-11-21 01:25:55,863 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 17:26:24] 2025-11-21 01:25:56,008 | INFO     | [data] copytool_in thread has finished
[2025-11-20 17:26:24] 2025-11-21 01:25:56,069 | INFO     | [payload] control thread has finished
[2025-11-20 17:26:24] 2025-11-21 01:25:56,074 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 17:26:24] 2025-11-21 01:25:56,095 | INFO     | [job] validate thread has finished
[2025-11-20 17:26:24] 2025-11-21 01:25:56,143 | INFO     | [job] control thread has finished
[2025-11-20 17:26:24] 2025-11-21 01:25:56,233 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 17:26:24] 2025-11-21 01:25:56,571 | INFO     | [data] copytool_out thread has finished
[2025-11-20 17:26:24] 2025-11-21 01:25:57,242 | INFO     | [job] queue monitor thread has finished
[2025-11-20 17:26:24] 2025-11-21 01:25:58,281 | INFO     | [monitor] cgroup control has ended
[2025-11-20 17:26:24] 2025-11-21 01:25:59,350 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 17:26:24] 2025-11-21 01:25:59,408 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140677767599936)>', '<ExcThread(monitor, started 140677065197312)>']
[2025-11-20 17:26:24] 2025-11-21 01:26:04,434 | INFO     | all workflow threads have been joined
[2025-11-20 17:26:24] 2025-11-21 01:26:04,434 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 17:26:24] 2025-11-21 01:26:04,435 | INFO     | traces error code: 0
[2025-11-20 17:26:24] 2025-11-21 01:26:04,435 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 17:26:24] 2025-11-21 01:26:23,943 | INFO     | PID=963256 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-20 17:26:24] 2025-11-21 01:26:23,943 | INFO     | .. there are 21 such processes running
[2025-11-20 17:26:24] 2025-11-21 01:26:23,944 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 17:26:24] 2025-11-21 01:26:23,944 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 17:26:24] 2025-11-21 01:26:23,944 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 17:26:24] 2025-11-21 01:26:23,944 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 17:26:24] 2025-11-21 01:26:23,944 | INFO     | [monitor] control thread has ended
[2025-11-20 17:26:24] 2025-11-21 01:26:24,081 [wrapper] ==== pilot stdout END ====
[2025-11-20 17:26:24] 2025-11-21 01:26:24,083 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 17:26:24] 2025-11-21 01:26:24,084 [wrapper] pilotpid: 963256
[2025-11-20 17:26:24] 2025-11-21 01:26:24,086 [wrapper] Pilot exit status: 0
[2025-11-20 17:26:24] 2025-11-21 01:26:24,092 [wrapper] pandaids: 6893881109
[2025-11-20 17:26:24] 2025-11-21 01:26:24,122 [wrapper] cleanup supervisor_pilot  963262 963257
[2025-11-20 17:26:24] 2025-11-21 01:26:24,123 [wrapper] Test setup, not cleaning
[2025-11-20 17:26:24] 2025-11-21 01:26:24,125 [wrapper] apfmon messages muted
[2025-11-20 17:26:24] 2025-11-21 01:26:24,126 [wrapper] ==== wrapper stdout END ====
[2025-11-20 17:26:24] 2025-11-21 01:26:24,128 [wrapper] ==== wrapper stderr END ====
[2025-11-20 17:26:24]  *** Error codes and diagnostics ***
[2025-11-20 17:26:24]     "exeErrorCode": 65,
[2025-11-20 17:26:24]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-20 17:26:24]     "pilotErrorCode": 1305,
[2025-11-20 17:26:24]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-20 17:26:24]  *** Listing of results directory ***
[2025-11-20 17:26:24] total 405160
[2025-11-20 17:26:24] -rw-r--r--. 1 boinc boinc    576529 Nov 20 11:10 pilot3.tar.gz
[2025-11-20 17:26:24] -rw-r--r--. 1 boinc boinc      5112 Nov 20 11:50 queuedata.json
[2025-11-20 17:26:24] -rwx------. 1 boinc boinc     36292 Nov 20 11:51 runpilot2-wrapper.sh
[2025-11-20 17:26:24] -rw-r--r--. 1 boinc boinc       100 Nov 20 17:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 17:26:24] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 17:20 run_atlas
[2025-11-20 17:26:24] -rw-r--r--. 1 boinc boinc       105 Nov 20 17:20 job.xml
[2025-11-20 17:26:24] -rw-r--r--. 1 boinc boinc      6628 Nov 20 17:20 init_data.xml
[2025-11-20 17:26:24] -rw-r--r--. 2 boinc boinc 410663382 Nov 20 17:20 EVNT.47493127._000851.pool.root.1
[2025-11-20 17:26:24] -rw-r--r--. 2 boinc boinc     15847 Nov 20 17:20 start_atlas.sh
[2025-11-20 17:26:24] drwxrwx--x. 2 boinc boinc      4096 Nov 20 17:20 shared
[2025-11-20 17:26:24] -rw-r--r--. 2 boinc boinc    590103 Nov 20 17:20 input.tar.gz
[2025-11-20 17:26:24] -rw-r--r--. 1 boinc boinc         0 Nov 20 17:20 boinc_lockfile
[2025-11-20 17:26:24] -rw-r--r--. 1 boinc boinc      2785 Nov 20 17:20 pandaJob.out
[2025-11-20 17:26:24] -rw-------. 1 boinc boinc    989817 Nov 20 17:20 agis_schedconf.cvmfs.json
[2025-11-20 17:26:24] -rw-------. 1 boinc boinc   1526164 Nov 20 17:20 agis_ddmendpoints.agis.ALL.json
[2025-11-20 17:26:24] drwx------. 5 boinc boinc      4096 Nov 20 17:20 pilot3
[2025-11-20 17:26:24] -rw-r--r--. 1 boinc boinc       524 Nov 20 17:23 boinc_task_state.xml
[2025-11-20 17:26:24] -rw-------. 1 boinc boinc       990 Nov 20 17:23 memory_monitor_summary.json
[2025-11-20 17:26:24] -rw-------. 1 boinc boinc     48999 Nov 20 17:23 log.47523449._008506.job.log.tgz.1
[2025-11-20 17:26:24] -rw-------. 1 boinc boinc     10340 Nov 20 17:25 heartbeat.json
[2025-11-20 17:26:24] -rw-r--r--. 1 boinc boinc      8192 Nov 20 17:26 boinc_mmap_file
[2025-11-20 17:26:24] -rw-r--r--. 1 boinc boinc        23 Nov 20 17:26 wrapper_checkpoint.txt
[2025-11-20 17:26:24] -rw-------. 1 boinc boinc        95 Nov 20 17:26 pilot_heartbeat.json
[2025-11-20 17:26:24] -rw-------. 1 boinc boinc       822 Nov 20 17:26 pilotlog.txt
[2025-11-20 17:26:24] -rw-------. 1 boinc boinc    104422 Nov 20 17:26 log.47523449._008506.job.log.1
[2025-11-20 17:26:24] -rw-------. 1 boinc boinc       186 Nov 20 17:26 output.list
[2025-11-20 17:26:24] -rw-r--r--. 1 boinc boinc       620 Nov 20 17:26 runtime_log
[2025-11-20 17:26:24] -rw-------. 1 boinc boinc    174080 Nov 20 17:26 result.tar.gz
[2025-11-20 17:26:24] -rw-r--r--. 1 boinc boinc      8636 Nov 20 17:26 runtime_log.err
[2025-11-20 17:26:24] -rw-------. 1 boinc boinc       646 Nov 20 17:26 l81KDmmrPg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmkSIKDmodKgBn.diag
[2025-11-20 17:26:24] -rw-r--r--. 1 boinc boinc     22490 Nov 20 17:26 stderr.txt
[2025-11-20 17:26:24] No HITS result produced
[2025-11-20 17:26:24]  *** Contents of shared directory: ***
[2025-11-20 17:26:24] total 401812
[2025-11-20 17:26:24] -rw-r--r--. 2 boinc boinc 410663382 Nov 20 17:20 ATLAS.root_0
[2025-11-20 17:26:24] -rw-r--r--. 2 boinc boinc     15847 Nov 20 17:20 start_atlas.sh
[2025-11-20 17:26:24] -rw-r--r--. 2 boinc boinc    590103 Nov 20 17:20 input.tar.gz
[2025-11-20 17:26:24] -rw-------. 1 boinc boinc    174080 Nov 20 17:26 result.tar.gz
17:26:25 (959554): run_atlas exited; CPU time 42.993838
17:26:25 (959554): called boinc_finish(0)

</stderr_txt>
]]>

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