Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:24:09 (32114): wrapper (7.7.26015): starting
01:24:09 (32114): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 01:24:09] Arguments: --nthreads 8
[2025-11-24 01:24:09] Threads: 8
[2025-11-24 01:24:09] Checking for CVMFS
[2025-11-24 01:24:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 01:24:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 01:24:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 01:24:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 01:24:12] 2.11.2.0 31060 218863 142740 153227 0 84 17786979 25165824 4632 130560 2 114509010 99.904 42679958 3014 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 01:24:12] CVMFS is ok
[2025-11-24 01:24:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 01:24:12] Checking for apptainer binary...
[2025-11-24 01:24:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 01:24:12] Running /usr/bin/apptainer --version
[2025-11-24 01:24:12] apptainer version 1.3.2-1.el7
[2025-11-24 01:24:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 01:24:36] cg-vwn357.simple-grid.lan
[2025-11-24 01:24:36] apptainer works
[2025-11-24 01:24:36] Set ATHENA_PROC_NUMBER=8
[2025-11-24 01:24:36] Set ATHENA_CORE_NUMBER=8
[2025-11-24 01:24:37] Starting ATLAS job with PandaID=6893867597
[2025-11-24 01:24:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 23:40:51]  *** The last 200 lines of the pilot log: ***
[2025-11-24 23:40:51] 2025-11-24 22:39:51,979 | INFO     | time since job start (79888s) is within the limit (172800.0s)
[2025-11-24 23:40:51] 2025-11-24 22:39:52,104 | INFO     | monitor loop #5367: job 0:6893867597 is in state 'finished'
[2025-11-24 23:40:51] 2025-11-24 22:39:52,105 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:40:51] 2025-11-24 22:39:53,985 | INFO     | time since job start (79890s) is within the limit (172800.0s)
[2025-11-24 23:40:51] 2025-11-24 22:39:54,611 | INFO     | monitor loop #5368: job 0:6893867597 is in state 'finished'
[2025-11-24 23:40:51] 2025-11-24 22:39:54,612 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:40:51] 2025-11-24 22:39:55,992 | INFO     | time since job start (79892s) is within the limit (172800.0s)
[2025-11-24 23:40:51] 2025-11-24 22:39:57,114 | INFO     | PID=3515 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 23:40:51] 2025-11-24 22:39:57,114 | INFO     | .. there are 2 such processes running
[2025-11-24 23:40:51] 2025-11-24 22:39:57,115 | INFO     | monitor loop #5369: job 0:6893867597 is in state 'finished'
[2025-11-24 23:40:51] 2025-11-24 22:39:57,116 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:40:51] 2025-11-24 22:39:58,115 | INFO     | time since job start (79895s) is within the limit (172800.0s)
[2025-11-24 23:40:51] 2025-11-24 22:39:59,626 | INFO     | monitor loop #5370: job 0:6893867597 is in state 'finished'
[2025-11-24 23:40:51] 2025-11-24 22:39:59,627 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:40:51] 2025-11-24 22:40:00,123 | INFO     | time since job start (79897s) is within the limit (172800.0s)
[2025-11-24 23:40:51] 2025-11-24 22:40:01,083 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 23:40:51] 2025-11-24 22:40:01,084 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 23:40:51] 2025-11-24 22:40:01,086 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6893867597/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 23:40:51] 2025-11-24 22:40:01,087 | INFO     | extracted standard info from prmon json
[2025-11-24 23:40:51] 2025-11-24 22:40:01,087 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 23:40:51] 2025-11-24 22:40:01,087 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 23:40:51] 2025-11-24 22:40:01,130 | INFO     | fitting pss+swap vs Time
[2025-11-24 23:40:51] 2025-11-24 22:40:01,132 | INFO     | sum of square deviations: 681251378019.0116
[2025-11-24 23:40:51] 2025-11-24 22:40:01,228 | INFO     | sum of deviations: 2688341904466.4478
[2025-11-24 23:40:51] 2025-11-24 22:40:01,228 | INFO     | mean x: 1763984249.5553846
[2025-11-24 23:40:51] 2025-11-24 22:40:01,229 | INFO     | mean y: 2837675.0353846154
[2025-11-24 23:40:51] 2025-11-24 22:40:01,229 | INFO     | intersect: -6958165164.603937
[2025-11-24 23:40:51] 2025-11-24 22:40:01,230 | INFO     | chi2: 23.855343391770674
[2025-11-24 23:40:51] 2025-11-24 22:40:01,232 | INFO     | sum of square deviations: 673421379888.421
[2025-11-24 23:40:51] 2025-11-24 22:40:01,316 | INFO     | sum of deviations: 3111072271185.4595
[2025-11-24 23:40:51] 2025-11-24 22:40:01,316 | INFO     | mean x: 1763984097.0594594
[2025-11-24 23:40:51] 2025-11-24 22:40:01,316 | INFO     | mean y: 2845906.7992277993
[2025-11-24 23:40:51] 2025-11-24 22:40:01,316 | INFO     | intersect: -8146408297.281863
[2025-11-24 23:40:51] 2025-11-24 22:40:01,318 | INFO     | chi2: 20.671433719934107
[2025-11-24 23:40:51] 2025-11-24 22:40:01,318 | INFO     | current chi2=20.671433719934107 (change=13.34673586352529 %)
[2025-11-24 23:40:51] 2025-11-24 22:40:01,318 | INFO     | right removable region: 1294
[2025-11-24 23:40:51] 2025-11-24 22:40:01,320 | INFO     | sum of square deviations: 673420542968.421
[2025-11-24 23:40:51] 2025-11-24 22:40:01,382 | INFO     | sum of deviations: 2152233529465.3796
[2025-11-24 23:40:51] 2025-11-24 22:40:01,382 | INFO     | mean x: 1763984402.0594594
[2025-11-24 23:40:51] 2025-11-24 22:40:01,383 | INFO     | mean y: 2848114.7613899615
[2025-11-24 23:40:51] 2025-11-24 22:40:01,383 | INFO     | intersect: -5634797506.845878
[2025-11-24 23:40:51] 2025-11-24 22:40:01,384 | INFO     | chi2: 19.337971795547563
[2025-11-24 23:40:51] 2025-11-24 22:40:01,384 | INFO     | current chi2=19.337971795547563 (change=18.936518842069816 %)
[2025-11-24 23:40:51] 2025-11-24 22:40:01,385 | INFO     | left removable region: 10
[2025-11-24 23:40:51] 2025-11-24 22:40:01,387 | INFO     | sum of square deviations: 656405405292.97
[2025-11-24 23:40:51] 2025-11-24 22:40:01,447 | INFO     | sum of deviations: 2230234571163.7734
[2025-11-24 23:40:51] 2025-11-24 22:40:01,447 | INFO     | mean x: 1763984371.5685358
[2025-11-24 23:40:51] 2025-11-24 22:40:01,447 | INFO     | mean y: 2867273.2468847353
[2025-11-24 23:40:51] 2025-11-24 22:40:01,447 | INFO     | intersect: -5990530856.539792
[2025-11-24 23:40:51] 2025-11-24 22:40:01,449 | INFO     | chi2: 12.197939201261566
[2025-11-24 23:40:51] 2025-11-24 22:40:01,449 | INFO     | current memory leak: 3.40 B/s (using 1284 data points, chi2=12.20)
[2025-11-24 23:40:51] 2025-11-24 22:40:01,451 | INFO     | could have reported an average CPU frequency of 1999 MHz (44 samples)
[2025-11-24 23:40:51] 2025-11-24 22:40:01,451 | INFO     | ..............................
[2025-11-24 23:40:51] 2025-11-24 22:40:01,451 | INFO     | . Timing measurements:
[2025-11-24 23:40:51] 2025-11-24 22:40:01,451 | INFO     | . get job = 0 s
[2025-11-24 23:40:51] 2025-11-24 22:40:01,451 | INFO     | . initial setup = 6 s
[2025-11-24 23:40:51] 2025-11-24 22:40:01,452 | INFO     | . payload setup = 173 s
[2025-11-24 23:40:51] 2025-11-24 22:40:01,452 | INFO     | . stage-in = 0 s
[2025-11-24 23:40:51] 2025-11-24 22:40:01,452 | INFO     | . payload execution = 79421 s
[2025-11-24 23:40:51] 2025-11-24 22:40:01,452 | INFO     | . stage-out = 5 s
[2025-11-24 23:40:51] 2025-11-24 22:40:01,452 | INFO     | . log creation = 2 s
[2025-11-24 23:40:51] 2025-11-24 22:40:01,452 | INFO     | ..............................
[2025-11-24 23:40:51] 2025-11-24 22:40:01,577 | INFO     | 
[2025-11-24 23:40:51] 2025-11-24 22:40:01,577 | INFO     | job summary report
[2025-11-24 23:40:51] 2025-11-24 22:40:01,577 | INFO     | --------------------------------------------------
[2025-11-24 23:40:51] 2025-11-24 22:40:01,577 | INFO     | PanDA job id: 6893867597
[2025-11-24 23:40:51] 2025-11-24 22:40:01,577 | INFO     | task id: 47523449
[2025-11-24 23:40:51] 2025-11-24 22:40:01,577 | INFO     | errors: (none)
[2025-11-24 23:40:51] 2025-11-24 22:40:01,577 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 23:40:51] 2025-11-24 22:40:01,578 | INFO     | pilot state: finished 
[2025-11-24 23:40:51] 2025-11-24 22:40:01,578 | INFO     | transexitcode: 0
[2025-11-24 23:40:51] 2025-11-24 22:40:01,578 | INFO     | exeerrorcode: 0
[2025-11-24 23:40:51] 2025-11-24 22:40:01,578 | INFO     | exeerrordiag: 
[2025-11-24 23:40:51] 2025-11-24 22:40:01,578 | INFO     | exitcode: 0
[2025-11-24 23:40:51] 2025-11-24 22:40:01,578 | INFO     | exitmsg: OK
[2025-11-24 23:40:51] 2025-11-24 22:40:01,578 | INFO     | cpuconsumptiontime: 346677 s
[2025-11-24 23:40:51] 2025-11-24 22:40:01,578 | INFO     | nevents: 1000
[2025-11-24 23:40:51] 2025-11-24 22:40:01,578 | INFO     | neventsw: 0
[2025-11-24 23:40:51] 2025-11-24 22:40:01,579 | INFO     | pid: 10081
[2025-11-24 23:40:51] 2025-11-24 22:40:01,579 | INFO     | pgrp: 10081
[2025-11-24 23:40:51] 2025-11-24 22:40:01,579 | INFO     | corecount: 8
[2025-11-24 23:40:51] 2025-11-24 22:40:01,579 | INFO     | event service: False
[2025-11-24 23:40:51] 2025-11-24 22:40:01,579 | INFO     | sizes: {0: 2298581, 1: 2298665, 2: 2298836, 12: 2298864, 23: 2298892, 34: 2298920, 45: 2299076, 55: 2299104, 66: 2299132, 77: 2299160, 88: 2299216, 96: 2299786, 98
[2025-11-24 23:40:51] 2025-11-24 22:40:01,579 | INFO     | --------------------------------------------------
[2025-11-24 23:40:51] 2025-11-24 22:40:01,579 | INFO     | 
[2025-11-24 23:40:51] 2025-11-24 22:40:01,579 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-11-24 23:40:51] 2025-11-24 22:40:02,155 | INFO     | time since job start (79899s) is within the limit (172800.0s)
[2025-11-24 23:40:51] 2025-11-24 22:40:02,323 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 23:40:51] 2025-11-24 22:40:02,323 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 23:40:51] 2025-11-24 22:40:02,323 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 23:40:51] 2025-11-24 22:40:02,324 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 23:40:51] 2025-11-24 22:40:02,324 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 23:40:51] 2025-11-24 22:40:02,324 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 23:40:51] 2025-11-24 22:40:02,324 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 23:40:51] 2025-11-24 22:40:02,324 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 23:40:51] 2025-11-24 22:40:02,324 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 23:40:51] 2025-11-24 22:40:02,324 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 23:40:51] 2025-11-24 22:40:02,324 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 23:40:51] 2025-11-24 22:40:02,324 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 23:40:51] 2025-11-24 22:40:02,324 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 23:40:51] 2025-11-24 22:40:02,325 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 23:40:51] 2025-11-24 22:40:02,325 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 23:40:51] 2025-11-24 22:40:02,325 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 23:40:51] 2025-11-24 22:40:02,325 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 23:40:51] 2025-11-24 22:40:02,325 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 23:40:51] 2025-11-24 22:40:02,325 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 23:40:51] 2025-11-24 22:40:02,325 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 23:40:51] 2025-11-24 22:40:02,325 | INFO     | job 6893867597 has completed (purged errors)
[2025-11-24 23:40:51] 2025-11-24 22:40:02,326 | INFO     | overall cleanup function is called
[2025-11-24 23:40:51] 2025-11-24 22:40:03,341 | INFO     | --- collectZombieJob: --- 10, [10081]
[2025-11-24 23:40:51] 2025-11-24 22:40:03,342 | INFO     | zombie collector waiting for pid 10081
[2025-11-24 23:40:51] 2025-11-24 22:40:03,342 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 23:40:51] 2025-11-24 22:40:03,342 | INFO     | collected zombie processes
[2025-11-24 23:40:51] 2025-11-24 22:40:03,342 | INFO     | will attempt to kill all subprocesses of pid=10081
[2025-11-24 23:40:51] 2025-11-24 22:40:03,406 | INFO     | process IDs to be killed: [10081] (in reverse order)
[2025-11-24 23:40:51] 2025-11-24 22:40:04,202 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 23:40:51] 2025-11-24 22:40:04,202 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 23:40:51] 2025-11-24 22:40:04,204 | INFO     | did not find any defunct processes belonging to 10081
[2025-11-24 23:40:51] 2025-11-24 22:40:04,206 | INFO     | did not find any defunct processes belonging to 10081
[2025-11-24 23:40:51] 2025-11-24 22:40:04,256 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 23:40:51] 2025-11-24 22:40:04,256 | INFO     | ready for new job
[2025-11-24 23:40:51] 2025-11-24 22:40:04,256 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 23:40:51] 2025-11-24 22:40:04,261 | INFO     | ***************************************
[2025-11-24 23:40:51] 2025-11-24 22:40:04,262 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 23:40:51] 2025-11-24 22:40:04,262 | INFO     | ***************************************
[2025-11-24 23:40:51] 2025-11-24 22:40:04,262 | INFO     | 
[2025-11-24 23:40:51] 2025-11-24 22:40:04,263 | INFO     | pilot is running in a VM
[2025-11-24 23:40:51] 2025-11-24 22:40:04,263 | INFO     | architecture information:
[2025-11-24 23:40:51] 2025-11-24 22:40:04,264 | INFO     | executing command: cat /etc/os-release
[2025-11-24 23:40:51] 2025-11-24 22:40:04,458 | INFO     | cat /etc/os-release:
[2025-11-24 23:40:51] NAME="CentOS Linux"
[2025-11-24 23:40:51] VERSION="7 (Core)"
[2025-11-24 23:40:51] ID="centos"
[2025-11-24 23:40:51] ID_LIKE="rhel fedora"
[2025-11-24 23:40:51] VERSION_ID="7"
[2025-11-24 23:40:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 23:40:51] ANSI_COLOR="0;31"
[2025-11-24 23:40:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 23:40:51] HOME_URL="https://www.centos.org/"
[2025-11-24 23:40:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 23:40:51] 
[2025-11-24 23:40:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 23:40:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 23:40:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 23:40:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 23:40:51] 
[2025-11-24 23:40:51] 2025-11-24 22:40:04,458 | INFO     | ***************************************
[2025-11-24 23:40:51] 2025-11-24 22:40:04,962 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-11-24 23:40:51] 2025-11-24 22:40:05,058 | INFO     | sufficient remaining disk space (493318307840 B)
[2025-11-24 23:40:51] 2025-11-24 22:40:05,059 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 23:40:51] 2025-11-24 22:40:05,059 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 23:40:51] 2025-11-24 22:40:05,059 | INFO     | update_server=False
[2025-11-24 23:40:51] 2025-11-24 22:40:05,059 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 23:40:51] 2025-11-24 22:40:05,279 | INFO     | all data control threads have been joined
[2025-11-24 23:40:51] 2025-11-24 22:40:05,329 | INFO     | all payload control threads have been joined
[2025-11-24 23:40:51] 2025-11-24 22:40:05,644 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:40:51] 2025-11-24 22:40:05,645 | INFO     | aborting loop
[2025-11-24 23:40:51] 2025-11-24 22:40:05,683 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 23:40:51] 2025-11-24 22:40:06,065 | INFO     | [job] retrieve thread has finished
[2025-11-24 23:40:51] 2025-11-24 22:40:06,235 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 23:40:51] 2025-11-24 22:40:06,285 | INFO     | [data] control thread has finished
[2025-11-24 23:40:51] 2025-11-24 22:40:06,335 | INFO     | [payload] control thread has finished
[2025-11-24 23:40:51] 2025-11-24 22:40:06,528 | INFO     | all job control threads have been joined
[2025-11-24 23:40:51] 2025-11-24 22:40:06,535 | INFO     | [payload] validate_post thread has finished
[2025-11-24 23:40:51] 2025-11-24 22:40:06,593 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:40:51] 2025-11-24 22:40:06,651 | INFO     | [job] job monitor thread has finished
[2025-11-24 23:40:51] 2025-11-24 22:40:06,921 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 23:40:51] 2025-11-24 22:40:06,970 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 23:40:51] 2025-11-24 22:40:07,158 | INFO     | [job] validate thread has finished
[2025-11-24 23:40:51] 2025-11-24 22:40:07,245 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 23:40:51] 2025-11-24 22:40:07,330 | INFO     | [payload] failed_post thread has finished
[2025-11-24 23:40:51] 2025-11-24 22:40:07,438 | INFO     | [data] copytool_in thread has finished
[2025-11-24 23:40:51] 2025-11-24 22:40:07,453 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 23:40:51] 2025-11-24 22:40:07,534 | INFO     | [job] control thread has finished
[2025-11-24 23:40:51] 2025-11-24 22:40:07,599 | INFO     | [job] queue monitor thread has finished
[2025-11-24 23:40:51] 2025-11-24 22:40:07,690 | INFO     | [data] copytool_out thread has finished
[2025-11-24 23:40:51] 2025-11-24 22:40:10,979 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 23:40:51] 2025-11-24 22:40:35,277 | INFO     | PID=3515 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 23:40:51] 2025-11-24 22:40:35,278 | INFO     | .. there are 2 such processes running
[2025-11-24 23:40:51] 2025-11-24 22:40:35,279 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 23:40:51] 2025-11-24 22:40:35,279 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 23:40:51] 2025-11-24 22:40:35,279 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 23:40:51] 2025-11-24 22:40:41,257 | INFO     | [monitor] cgroup control has ended
[2025-11-24 23:40:51] 2025-11-24 22:40:42,665 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140276520884032)>', '<ExcThread(monitor, started 140276064556800)>']
[2025-11-24 23:40:51] 2025-11-24 22:40:43,327 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 23:40:51] 2025-11-24 22:40:43,328 | INFO     | [monitor] control thread has ended
[2025-11-24 23:40:51] 2025-11-24 22:40:47,691 | INFO     | all workflow threads have been joined
[2025-11-24 23:40:51] 2025-11-24 22:40:47,692 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 23:40:51] 2025-11-24 22:40:47,692 | INFO     | traces error code: 0
[2025-11-24 23:40:51] 2025-11-24 22:40:47,692 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 23:40:51] 2025-11-24 22:40:47,863 [wrapper] ==== pilot stdout END ====
[2025-11-24 23:40:51] 2025-11-24 22:40:47,874 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 23:40:51] 2025-11-24 22:40:47,882 [wrapper] pilotpid: 3515
[2025-11-24 23:40:51] 2025-11-24 22:40:47,930 [wrapper] Pilot exit status: 0
[2025-11-24 23:40:51] 2025-11-24 22:40:48,415 [wrapper] pandaids: 6893867597
[2025-11-24 23:40:51] 2025-11-24 22:40:48,984 [wrapper] cleanup supervisor_pilot 24831 3516
[2025-11-24 23:40:51] 2025-11-24 22:40:49,095 [wrapper] Test setup, not cleaning
[2025-11-24 23:40:51] 2025-11-24 22:40:49,218 [wrapper] apfmon messages muted
[2025-11-24 23:40:51] 2025-11-24 22:40:49,330 [wrapper] ==== wrapper stdout END ====
[2025-11-24 23:40:51] 2025-11-24 22:40:49,412 [wrapper] ==== wrapper stderr END ====
[2025-11-24 23:40:51]  *** Error codes and diagnostics ***
[2025-11-24 23:40:51]     "exeErrorCode": 0,
[2025-11-24 23:40:51]     "exeErrorDiag": "",
[2025-11-24 23:40:51]     "pilotErrorCode": 0,
[2025-11-24 23:40:51]     "pilotErrorDiag": "",
[2025-11-24 23:40:51]  *** Listing of results directory ***
[2025-11-24 23:40:51] total 1335564
[2025-11-24 23:40:51] -rw-r--r--. 1 boinc boinc    576529 Nov 20 15:06 pilot3.tar.gz
[2025-11-24 23:40:51] -rw-r--r--. 1 boinc boinc      5112 Nov 20 15:36 queuedata.json
[2025-11-24 23:40:51] -rwx------. 1 boinc boinc     36292 Nov 20 15:37 runpilot2-wrapper.sh
[2025-11-24 23:40:51] -rw-r--r--. 1 boinc boinc       100 Nov 24 01:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 23:40:51] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 01:24 run_atlas
[2025-11-24 23:40:51] -rw-r--r--. 1 boinc boinc       105 Nov 24 01:24 job.xml
[2025-11-24 23:40:51] -rw-r--r--. 1 boinc boinc      6393 Nov 24 01:24 init_data.xml
[2025-11-24 23:40:51] -rw-r--r--. 2 boinc boinc 408897800 Nov 24 01:24 EVNT.47493127._000625.pool.root.1
[2025-11-24 23:40:51] -rw-r--r--. 2 boinc boinc     15847 Nov 24 01:24 start_atlas.sh
[2025-11-24 23:40:51] drwxrwx--x. 2 boinc boinc        68 Nov 24 01:24 shared
[2025-11-24 23:40:51] -rw-r--r--. 2 boinc boinc    590101 Nov 24 01:24 input.tar.gz
[2025-11-24 23:40:51] -rw-r--r--. 1 boinc boinc         0 Nov 24 01:24 boinc_lockfile
[2025-11-24 23:40:51] -rw-r--r--. 1 boinc boinc      2786 Nov 24 01:24 pandaJob.out
[2025-11-24 23:40:51] -rw-------. 1 boinc boinc    989786 Nov 24 01:28 agis_schedconf.cvmfs.json
[2025-11-24 23:40:51] drwx------. 5 boinc boinc      4096 Nov 24 01:28 pilot3
[2025-11-24 23:40:51] -rw-r--r--. 1 boinc boinc       533 Nov 24 23:12 boinc_task_state.xml
[2025-11-24 23:40:51] -rw-------. 1 boinc boinc 928764126 Nov 24 23:37 HITS.47523449._006244.pool.root.1
[2025-11-24 23:40:51] -rw-------. 1 boinc boinc      1033 Nov 24 23:38 memory_monitor_summary.json
[2025-11-24 23:40:51] -rw-------. 1 boinc boinc   1516227 Nov 24 23:38 agis_ddmendpoints.agis.ALL.json
[2025-11-24 23:40:51] -rw-------. 1 boinc boinc   2413527 Nov 24 23:38 log.47523449._006244.job.log.tgz.1
[2025-11-24 23:40:51] -rw-------. 1 boinc boinc      8628 Nov 24 23:40 heartbeat.json
[2025-11-24 23:40:51] -rw-r--r--. 1 boinc boinc        29 Nov 24 23:40 wrapper_checkpoint.txt
[2025-11-24 23:40:51] -rw-------. 1 boinc boinc        95 Nov 24 23:40 pilot_heartbeat.json
[2025-11-24 23:40:51] -rw-------. 1 boinc boinc      4884 Nov 24 23:40 pilotlog.txt
[2025-11-24 23:40:51] -rw-------. 1 boinc boinc  10610173 Nov 24 23:40 log.47523449._006244.job.log.1
[2025-11-24 23:40:51] -rw-------. 1 boinc boinc       353 Nov 24 23:40 output.list
[2025-11-24 23:40:51] -rw-r--r--. 1 boinc boinc       620 Nov 24 23:40 runtime_log
[2025-11-24 23:40:51] -rw-------. 1 boinc boinc  13045760 Nov 24 23:40 result.tar.gz
[2025-11-24 23:40:51] -rw-r--r--. 1 boinc boinc      8833 Nov 24 23:40 runtime_log.err
[2025-11-24 23:40:51] -rw-------. 1 boinc boinc       662 Nov 24 23:40 NOLNDmByKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmO6HKDmSVDsJo.diag
[2025-11-24 23:40:51] -rw-r--r--. 1 boinc boinc      8192 Nov 24 23:40 boinc_mmap_file
[2025-11-24 23:40:51] -rw-r--r--. 1 boinc boinc     21508 Nov 24 23:40 stderr.txt
[2025-11-24 23:40:51] HITS file was successfully produced:
[2025-11-24 23:40:51] -rw-------. 1 boinc boinc 928764126 Nov 24 23:37 shared/HITS.pool.root.1
[2025-11-24 23:40:51]  *** Contents of shared directory: ***
[2025-11-24 23:40:51] total 1319652
[2025-11-24 23:40:51] -rw-r--r--. 2 boinc boinc 408897800 Nov 24 01:24 ATLAS.root_0
[2025-11-24 23:40:51] -rw-r--r--. 2 boinc boinc     15847 Nov 24 01:24 start_atlas.sh
[2025-11-24 23:40:51] -rw-r--r--. 2 boinc boinc    590101 Nov 24 01:24 input.tar.gz
[2025-11-24 23:40:51] -rw-------. 1 boinc boinc 928764126 Nov 24 23:37 HITS.pool.root.1
[2025-11-24 23:40:51] -rw-------. 1 boinc boinc  13045760 Nov 24 23:40 result.tar.gz
23:40:52 (32114): run_atlas exited; CPU time 346937.493396
23:40:52 (32114): called boinc_finish(0)

</stderr_txt>
]]>

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