Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:34:45 (28841): wrapper (7.7.26015): starting
00:34:45 (28841): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 00:34:45] Arguments: --nthreads 8
[2025-11-24 00:34:45] Threads: 8
[2025-11-24 00:34:45] Checking for CVMFS
[2025-11-24 00:34:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:34:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:34:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:34:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:34:48] 2.11.2.0 31978 281667 145376 153226 3 84 18722741 25165825 4632 130560 2 129964554 99.876 73691360 2993 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 00:34:48] CVMFS is ok
[2025-11-24 00:34:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:34:48] Checking for apptainer binary...
[2025-11-24 00:34:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:34:48] Running /usr/bin/apptainer --version
[2025-11-24 00:34:48] apptainer version 1.3.2-1.el7
[2025-11-24 00:34:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:34:59] cg-vwn266.simple-grid.lan
[2025-11-24 00:34:59] apptainer works
[2025-11-24 00:34:59] Set ATHENA_PROC_NUMBER=8
[2025-11-24 00:34:59] Set ATHENA_CORE_NUMBER=8
[2025-11-24 00:34:59] Starting ATLAS job with PandaID=6893868194
[2025-11-24 00:34:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 00:31:38]  *** The last 200 lines of the pilot log: ***
[2025-11-25 00:31:38] 2025-11-24 23:30:49,665 | INFO     | time since job start (85913s) is within the limit (172800.0s)
[2025-11-25 00:31:38] 2025-11-24 23:30:50,836 | INFO     | PID=32650 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 00:31:38] 2025-11-24 23:30:50,837 | INFO     | .. there are 2 such processes running
[2025-11-25 00:31:38] 2025-11-24 23:30:51,285 | INFO     | monitor loop #5775: job 0:6893868194 is in state 'finished'
[2025-11-25 00:31:38] 2025-11-24 23:30:51,285 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:31:38] 2025-11-24 23:30:51,838 | INFO     | time since job start (85915s) is within the limit (172800.0s)
[2025-11-25 00:31:38] 2025-11-24 23:30:53,793 | INFO     | monitor loop #5776: job 0:6893868194 is in state 'finished'
[2025-11-25 00:31:38] 2025-11-24 23:30:53,793 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:31:38] 2025-11-24 23:30:53,849 | INFO     | time since job start (85917s) is within the limit (172800.0s)
[2025-11-25 00:31:38] 2025-11-24 23:30:55,855 | INFO     | time since job start (85919s) is within the limit (172800.0s)
[2025-11-25 00:31:38] 2025-11-24 23:30:56,300 | INFO     | monitor loop #5777: job 0:6893868194 is in state 'finished'
[2025-11-25 00:31:38] 2025-11-24 23:30:56,300 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:31:38] 2025-11-24 23:30:57,863 | INFO     | time since job start (85921s) is within the limit (172800.0s)
[2025-11-25 00:31:38] 2025-11-24 23:30:58,681 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 00:31:38] 2025-11-24 23:30:58,682 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 00:31:38] 2025-11-24 23:30:58,684 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6893868194/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 00:31:38] 2025-11-24 23:30:58,685 | INFO     | extracted standard info from prmon json
[2025-11-25 00:31:38] 2025-11-24 23:30:58,685 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 00:31:38] 2025-11-24 23:30:58,685 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 00:31:38] 2025-11-24 23:30:58,712 | INFO     | fitting pss+swap vs Time
[2025-11-25 00:31:38] 2025-11-24 23:30:58,715 | INFO     | sum of square deviations: 849042208552.8273
[2025-11-25 00:31:38] 2025-11-24 23:30:58,784 | INFO     | sum of deviations: 3147441516773.46
[2025-11-25 00:31:38] 2025-11-24 23:30:58,785 | INFO     | mean x: 1763984312.171551
[2025-11-25 00:31:38] 2025-11-24 23:30:58,785 | INFO     | mean y: 2819454.664760543
[2025-11-25 00:31:38] 2025-11-24 23:30:58,785 | INFO     | intersect: -6536357753.649928
[2025-11-25 00:31:38] 2025-11-24 23:30:58,787 | INFO     | chi2: 31.179799639393412
[2025-11-25 00:31:38] 2025-11-24 23:30:58,789 | INFO     | sum of square deviations: 839971775573.4408
[2025-11-25 00:31:38] 2025-11-24 23:30:58,816 | INFO     | monitor loop #5778: job 0:6893868194 is in state 'finished'
[2025-11-25 00:31:38] 2025-11-24 23:30:58,816 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:31:38] 2025-11-24 23:30:58,850 | INFO     | sum of deviations: 3625007879775.393
[2025-11-25 00:31:38] 2025-11-24 23:30:58,850 | INFO     | mean x: 1763984159.675753
[2025-11-25 00:31:38] 2025-11-24 23:30:58,850 | INFO     | mean y: 2827481.6535150646
[2025-11-25 00:31:38] 2025-11-24 23:30:58,851 | INFO     | intersect: -7609876497.90359
[2025-11-25 00:31:38] 2025-11-24 23:30:58,852 | INFO     | chi2: 27.643674298897892
[2025-11-25 00:31:38] 2025-11-24 23:30:58,853 | INFO     | current chi2=27.643674298897892 (change=11.34107781766462 %)
[2025-11-25 00:31:38] 2025-11-24 23:30:58,853 | INFO     | right removable region: 1393
[2025-11-25 00:31:38] 2025-11-24 23:30:58,855 | INFO     | sum of square deviations: 839970775783.441
[2025-11-25 00:31:38] 2025-11-24 23:30:58,913 | INFO     | sum of deviations: 2552964117689.9795
[2025-11-25 00:31:38] 2025-11-24 23:30:58,913 | INFO     | mean x: 1763984464.675753
[2025-11-25 00:31:38] 2025-11-24 23:30:58,913 | INFO     | mean y: 2829448.449067432
[2025-11-25 00:31:38] 2025-11-24 23:30:58,913 | INFO     | intersect: -5358534508.861772
[2025-11-25 00:31:38] 2025-11-24 23:30:58,915 | INFO     | chi2: 26.237910965890322
[2025-11-25 00:31:38] 2025-11-24 23:30:58,915 | INFO     | current chi2=26.237910965890322 (change=15.849648588695139 %)
[2025-11-25 00:31:38] 2025-11-24 23:30:58,916 | INFO     | left removable region: 10
[2025-11-25 00:31:38] 2025-11-24 23:30:58,918 | INFO     | sum of square deviations: 820242727246.6128
[2025-11-25 00:31:38] 2025-11-24 23:30:58,976 | INFO     | sum of deviations: 2601747540208.505
[2025-11-25 00:31:38] 2025-11-24 23:30:58,976 | INFO     | mean x: 1763984434.1851048
[2025-11-25 00:31:38] 2025-11-24 23:30:58,976 | INFO     | mean y: 2848238.607375271
[2025-11-25 00:31:38] 2025-11-24 23:30:58,977 | INFO     | intersect: -5592376211.614825
[2025-11-25 00:31:38] 2025-11-24 23:30:58,978 | INFO     | chi2: 18.118571047319836
[2025-11-25 00:31:38] 2025-11-24 23:30:58,979 | INFO     | current memory leak: 3.17 B/s (using 1383 data points, chi2=18.12)
[2025-11-25 00:31:38] 2025-11-24 23:30:58,980 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-25 00:31:38] 2025-11-24 23:30:58,980 | INFO     | ..............................
[2025-11-25 00:31:38] 2025-11-24 23:30:58,980 | INFO     | . Timing measurements:
[2025-11-25 00:31:38] 2025-11-24 23:30:58,981 | INFO     | . get job = 0 s
[2025-11-25 00:31:38] 2025-11-24 23:30:58,981 | INFO     | . initial setup = 12 s
[2025-11-25 00:31:38] 2025-11-24 23:30:58,981 | INFO     | . payload setup = 166 s
[2025-11-25 00:31:38] 2025-11-24 23:30:58,981 | INFO     | . stage-in = 0 s
[2025-11-25 00:31:38] 2025-11-24 23:30:58,981 | INFO     | . payload execution = 85442 s
[2025-11-25 00:31:38] 2025-11-24 23:30:58,981 | INFO     | . stage-out = 5 s
[2025-11-25 00:31:38] 2025-11-24 23:30:58,982 | INFO     | . log creation = 2 s
[2025-11-25 00:31:38] 2025-11-24 23:30:58,982 | INFO     | ..............................
[2025-11-25 00:31:38] 2025-11-24 23:30:59,516 | INFO     | 
[2025-11-25 00:31:38] 2025-11-24 23:30:59,516 | INFO     | job summary report
[2025-11-25 00:31:38] 2025-11-24 23:30:59,516 | INFO     | --------------------------------------------------
[2025-11-25 00:31:38] 2025-11-24 23:30:59,516 | INFO     | PanDA job id: 6893868194
[2025-11-25 00:31:38] 2025-11-24 23:30:59,516 | INFO     | task id: 47523449
[2025-11-25 00:31:38] 2025-11-24 23:30:59,517 | INFO     | errors: (none)
[2025-11-25 00:31:38] 2025-11-24 23:30:59,517 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 00:31:38] 2025-11-24 23:30:59,517 | INFO     | pilot state: finished 
[2025-11-25 00:31:38] 2025-11-24 23:30:59,517 | INFO     | transexitcode: 0
[2025-11-25 00:31:38] 2025-11-24 23:30:59,517 | INFO     | exeerrorcode: 0
[2025-11-25 00:31:38] 2025-11-24 23:30:59,517 | INFO     | exeerrordiag: 
[2025-11-25 00:31:38] 2025-11-24 23:30:59,517 | INFO     | exitcode: 0
[2025-11-25 00:31:38] 2025-11-24 23:30:59,517 | INFO     | exitmsg: OK
[2025-11-25 00:31:38] 2025-11-24 23:30:59,517 | INFO     | cpuconsumptiontime: 340213 s
[2025-11-25 00:31:38] 2025-11-24 23:30:59,517 | INFO     | nevents: 1000
[2025-11-25 00:31:38] 2025-11-24 23:30:59,517 | INFO     | neventsw: 0
[2025-11-25 00:31:38] 2025-11-24 23:30:59,517 | INFO     | pid: 6825
[2025-11-25 00:31:38] 2025-11-24 23:30:59,518 | INFO     | pgrp: 6825
[2025-11-25 00:31:38] 2025-11-24 23:30:59,518 | INFO     | corecount: 8
[2025-11-25 00:31:38] 2025-11-24 23:30:59,518 | INFO     | event service: False
[2025-11-25 00:31:38] 2025-11-24 23:30:59,518 | INFO     | sizes: {0: 2297978, 1: 2298834, 2: 2298834, 13: 2298862, 24: 2298918, 34: 2298946, 45: 2299102, 56: 2299130, 67: 2299158, 78: 2299186, 88: 2299242, 99: 2299550, 10
[2025-11-25 00:31:38] 2025-11-24 23:30:59,518 | INFO     | --------------------------------------------------
[2025-11-25 00:31:38] 2025-11-24 23:30:59,518 | INFO     | 
[2025-11-25 00:31:38] 2025-11-24 23:30:59,518 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-11-25 00:31:38] 2025-11-24 23:30:59,878 | INFO     | time since job start (85923s) is within the limit (172800.0s)
[2025-11-25 00:31:38] 2025-11-24 23:31:00,186 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 00:31:38] 2025-11-24 23:31:00,186 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 00:31:38] 2025-11-24 23:31:00,186 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 00:31:38] 2025-11-24 23:31:00,186 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 00:31:38] 2025-11-24 23:31:00,186 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 00:31:38] 2025-11-24 23:31:00,186 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 00:31:38] 2025-11-24 23:31:00,186 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 00:31:38] 2025-11-24 23:31:00,186 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 00:31:38] 2025-11-24 23:31:00,186 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 00:31:38] 2025-11-24 23:31:00,187 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 00:31:38] 2025-11-24 23:31:00,187 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 00:31:38] 2025-11-24 23:31:00,187 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 00:31:38] 2025-11-24 23:31:00,187 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 00:31:38] 2025-11-24 23:31:00,187 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 00:31:38] 2025-11-24 23:31:00,187 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 00:31:38] 2025-11-24 23:31:00,187 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 00:31:38] 2025-11-24 23:31:00,187 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 00:31:38] 2025-11-24 23:31:00,187 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 00:31:38] 2025-11-24 23:31:00,187 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 00:31:38] 2025-11-24 23:31:00,187 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 00:31:38] 2025-11-24 23:31:00,188 | INFO     | job 6893868194 has completed (purged errors)
[2025-11-25 00:31:38] 2025-11-24 23:31:00,188 | INFO     | overall cleanup function is called
[2025-11-25 00:31:38] 2025-11-24 23:31:01,204 | INFO     | --- collectZombieJob: --- 10, [6825]
[2025-11-25 00:31:38] 2025-11-24 23:31:01,204 | INFO     | zombie collector waiting for pid 6825
[2025-11-25 00:31:38] 2025-11-24 23:31:01,204 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 00:31:38] 2025-11-24 23:31:01,204 | INFO     | collected zombie processes
[2025-11-25 00:31:38] 2025-11-24 23:31:01,204 | INFO     | will attempt to kill all subprocesses of pid=6825
[2025-11-25 00:31:38] 2025-11-24 23:31:01,296 | INFO     | process IDs to be killed: [6825] (in reverse order)
[2025-11-25 00:31:38] 2025-11-24 23:31:02,344 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 00:31:38] 2025-11-24 23:31:02,344 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 00:31:38] 2025-11-24 23:31:02,352 | INFO     | did not find any defunct processes belonging to 6825
[2025-11-25 00:31:38] 2025-11-24 23:31:02,354 | INFO     | did not find any defunct processes belonging to 6825
[2025-11-25 00:31:38] 2025-11-24 23:31:02,356 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 00:31:38] 2025-11-24 23:31:02,356 | INFO     | ready for new job
[2025-11-25 00:31:38] 2025-11-24 23:31:02,356 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 00:31:38] 2025-11-24 23:31:02,362 | INFO     | ***************************************
[2025-11-25 00:31:38] 2025-11-24 23:31:02,362 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 00:31:38] 2025-11-24 23:31:02,362 | INFO     | ***************************************
[2025-11-25 00:31:38] 2025-11-24 23:31:02,362 | INFO     | 
[2025-11-25 00:31:38] 2025-11-24 23:31:02,363 | INFO     | pilot is running in a VM
[2025-11-25 00:31:38] 2025-11-24 23:31:02,363 | INFO     | architecture information:
[2025-11-25 00:31:38] 2025-11-24 23:31:02,364 | INFO     | executing command: cat /etc/os-release
[2025-11-25 00:31:38] 2025-11-24 23:31:02,443 | INFO     | cat /etc/os-release:
[2025-11-25 00:31:38] NAME="CentOS Linux"
[2025-11-25 00:31:38] VERSION="7 (Core)"
[2025-11-25 00:31:38] ID="centos"
[2025-11-25 00:31:38] ID_LIKE="rhel fedora"
[2025-11-25 00:31:38] VERSION_ID="7"
[2025-11-25 00:31:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 00:31:38] ANSI_COLOR="0;31"
[2025-11-25 00:31:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 00:31:38] HOME_URL="https://www.centos.org/"
[2025-11-25 00:31:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 00:31:38] 
[2025-11-25 00:31:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 00:31:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 00:31:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 00:31:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 00:31:38] 
[2025-11-25 00:31:38] 2025-11-24 23:31:02,444 | INFO     | ***************************************
[2025-11-25 00:31:38] 2025-11-24 23:31:02,947 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-11-25 00:31:38] 2025-11-24 23:31:03,247 | INFO     | sufficient remaining disk space (492808699904 B)
[2025-11-25 00:31:38] 2025-11-24 23:31:03,247 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 00:31:38] 2025-11-24 23:31:03,247 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 00:31:38] 2025-11-24 23:31:03,247 | INFO     | update_server=False
[2025-11-25 00:31:38] 2025-11-24 23:31:03,247 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 00:31:38] 2025-11-24 23:31:03,248 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 00:31:38] 2025-11-24 23:31:03,248 | INFO     | aborting loop
[2025-11-25 00:31:38] 2025-11-24 23:31:03,315 | INFO     | all payload control threads have been joined
[2025-11-25 00:31:38] 2025-11-24 23:31:03,344 | INFO     | all data control threads have been joined
[2025-11-25 00:31:38] 2025-11-24 23:31:03,604 | INFO     | all job control threads have been joined
[2025-11-25 00:31:38] 2025-11-24 23:31:04,126 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 00:31:38] 2025-11-24 23:31:04,253 | INFO     | [job] retrieve thread has finished
[2025-11-25 00:31:38] 2025-11-24 23:31:04,254 | INFO     | [job] job monitor thread has finished
[2025-11-25 00:31:38] 2025-11-24 23:31:04,321 | INFO     | [payload] control thread has finished
[2025-11-25 00:31:38] 2025-11-24 23:31:04,350 | INFO     | [data] control thread has finished
[2025-11-25 00:31:38] 2025-11-24 23:31:04,403 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 00:31:38] 2025-11-24 23:31:04,407 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 00:31:38] 2025-11-24 23:31:04,504 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 00:31:38] 2025-11-24 23:31:04,610 | INFO     | [job] control thread has finished
[2025-11-25 00:31:38] 2025-11-24 23:31:04,642 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 00:31:38] 2025-11-24 23:31:05,044 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 00:31:38] 2025-11-24 23:31:05,131 | INFO     | [data] copytool_in thread has finished
[2025-11-25 00:31:38] 2025-11-24 23:31:05,132 | INFO     | [job] queue monitor thread has finished
[2025-11-25 00:31:38] 2025-11-24 23:31:05,321 | INFO     | [job] validate thread has finished
[2025-11-25 00:31:38] 2025-11-24 23:31:05,761 | INFO     | [payload] failed_post thread has finished
[2025-11-25 00:31:38] 2025-11-24 23:31:05,842 | INFO     | [payload] validate_post thread has finished
[2025-11-25 00:31:38] 2025-11-24 23:31:06,396 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 00:31:38] 2025-11-24 23:31:06,410 | INFO     | [data] copytool_out thread has finished
[2025-11-25 00:31:38] 2025-11-24 23:31:10,405 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 00:31:38] 2025-11-24 23:31:25,363 | INFO     | [monitor] cgroup control has ended
[2025-11-25 00:31:38] 2025-11-24 23:31:26,871 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140620905961280)>', '<ExcThread(monitor, started 140620165273344)>']
[2025-11-25 00:31:38] 2025-11-24 23:31:31,897 | INFO     | all workflow threads have been joined
[2025-11-25 00:31:38] 2025-11-24 23:31:31,897 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 00:31:38] 2025-11-24 23:31:31,898 | INFO     | traces error code: 0
[2025-11-25 00:31:38] 2025-11-24 23:31:31,898 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 00:31:38] 2025-11-24 23:31:32,995 | INFO     | PID=32650 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 00:31:38] 2025-11-24 23:31:32,995 | INFO     | .. there are 2 such processes running
[2025-11-25 00:31:38] 2025-11-24 23:31:32,996 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 00:31:38] 2025-11-24 23:31:32,996 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 00:31:38] 2025-11-24 23:31:32,996 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 00:31:38] 2025-11-24 23:31:32,996 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 00:31:38] 2025-11-24 23:31:32,996 | INFO     | [monitor] control thread has ended
[2025-11-25 00:31:38] 2025-11-24 23:31:33,329 [wrapper] ==== pilot stdout END ====
[2025-11-25 00:31:38] 2025-11-24 23:31:33,387 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 00:31:38] 2025-11-24 23:31:33,453 [wrapper] pilotpid: 32650
[2025-11-25 00:31:38] 2025-11-24 23:31:33,562 [wrapper] Pilot exit status: 0
[2025-11-25 00:31:38] 2025-11-24 23:31:34,022 [wrapper] pandaids: 6893868194
[2025-11-25 00:31:38] 2025-11-24 23:31:35,088 [wrapper] cleanup supervisor_pilot 12389 32651
[2025-11-25 00:31:38] 2025-11-24 23:31:35,181 [wrapper] Test setup, not cleaning
[2025-11-25 00:31:38] 2025-11-24 23:31:35,283 [wrapper] apfmon messages muted
[2025-11-25 00:31:38] 2025-11-24 23:31:35,371 [wrapper] ==== wrapper stdout END ====
[2025-11-25 00:31:38] 2025-11-24 23:31:35,468 [wrapper] ==== wrapper stderr END ====
[2025-11-25 00:31:38]  *** Error codes and diagnostics ***
[2025-11-25 00:31:38]     "exeErrorCode": 0,
[2025-11-25 00:31:38]     "exeErrorDiag": "",
[2025-11-25 00:31:38]     "pilotErrorCode": 0,
[2025-11-25 00:31:38]     "pilotErrorDiag": "",
[2025-11-25 00:31:38]  *** Listing of results directory ***
[2025-11-25 00:31:38] total 1325848
[2025-11-25 00:31:38] -rw-r--r--. 1 boinc boinc    576529 Nov 20 15:06 pilot3.tar.gz
[2025-11-25 00:31:38] -rwx------. 1 boinc boinc     36292 Nov 20 15:40 runpilot2-wrapper.sh
[2025-11-25 00:31:38] -rw-r--r--. 1 boinc boinc      5112 Nov 20 15:40 queuedata.json
[2025-11-25 00:31:38] -rw-r--r--. 1 boinc boinc       100 Nov 24 00:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 00:31:38] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 00:34 run_atlas
[2025-11-25 00:31:38] -rw-r--r--. 1 boinc boinc       105 Nov 24 00:34 job.xml
[2025-11-25 00:31:38] -rw-r--r--. 2 boinc boinc 410223734 Nov 24 00:34 EVNT.47493127._000628.pool.root.1
[2025-11-25 00:31:38] -rw-r--r--. 1 boinc boinc      6392 Nov 24 00:34 init_data.xml
[2025-11-25 00:31:38] -rw-r--r--. 2 boinc boinc     15847 Nov 24 00:34 start_atlas.sh
[2025-11-25 00:31:38] drwxrwx--x. 2 boinc boinc        68 Nov 24 00:34 shared
[2025-11-25 00:31:38] -rw-r--r--. 2 boinc boinc    590098 Nov 24 00:34 input.tar.gz
[2025-11-25 00:31:38] -rw-r--r--. 1 boinc boinc         0 Nov 24 00:34 boinc_lockfile
[2025-11-25 00:31:38] -rw-r--r--. 1 boinc boinc      2785 Nov 24 00:34 pandaJob.out
[2025-11-25 00:31:38] -rw-------. 1 boinc boinc    989786 Nov 24 00:38 agis_schedconf.cvmfs.json
[2025-11-25 00:31:38] drwx------. 5 boinc boinc      4096 Nov 24 00:38 pilot3
[2025-11-25 00:31:38] -rw-r--r--. 1 boinc boinc       533 Nov 24 23:56 boinc_task_state.xml
[2025-11-25 00:31:38] -rw-------. 1 boinc boinc 915694553 Nov 25 00:27 HITS.47523449._006278.pool.root.1
[2025-11-25 00:31:38] -rw-------. 1 boinc boinc      1032 Nov 25 00:29 memory_monitor_summary.json
[2025-11-25 00:31:38] -rw-------. 1 boinc boinc   1516227 Nov 25 00:29 agis_ddmendpoints.agis.ALL.json
[2025-11-25 00:31:38] -rw-------. 1 boinc boinc   2494592 Nov 25 00:29 log.47523449._006278.job.log.tgz.1
[2025-11-25 00:31:38] -rw-------. 1 boinc boinc      7963 Nov 25 00:30 heartbeat.json
[2025-11-25 00:31:38] -rw-r--r--. 1 boinc boinc        29 Nov 25 00:31 wrapper_checkpoint.txt
[2025-11-25 00:31:38] -rw-r--r--. 1 boinc boinc      8192 Nov 25 00:31 boinc_mmap_file
[2025-11-25 00:31:38] -rw-------. 1 boinc boinc        95 Nov 25 00:31 pilot_heartbeat.json
[2025-11-25 00:31:38] -rw-------. 1 boinc boinc       820 Nov 25 00:31 pilotlog.txt
[2025-11-25 00:31:38] -rw-------. 1 boinc boinc  11429842 Nov 25 00:31 log.47523449._006278.job.log.1
[2025-11-25 00:31:38] -rw-------. 1 boinc boinc       353 Nov 25 00:31 output.list
[2025-11-25 00:31:38] -rw-r--r--. 1 boinc boinc       620 Nov 25 00:31 runtime_log
[2025-11-25 00:31:38] -rw-------. 1 boinc boinc  13946880 Nov 25 00:31 result.tar.gz
[2025-11-25 00:31:38] -rw-------. 1 boinc boinc       662 Nov 25 00:31 YUiNDmX0Kg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmmoGKDm0KiRJo.diag
[2025-11-25 00:31:38] -rw-r--r--. 1 boinc boinc      8817 Nov 25 00:31 runtime_log.err
[2025-11-25 00:31:38] -rw-r--r--. 1 boinc boinc     21491 Nov 25 00:31 stderr.txt
[2025-11-25 00:31:38] HITS file was successfully produced:
[2025-11-25 00:31:38] -rw-------. 1 boinc boinc 915694553 Nov 25 00:27 shared/HITS.pool.root.1
[2025-11-25 00:31:38]  *** Contents of shared directory: ***
[2025-11-25 00:31:38] total 1309064
[2025-11-25 00:31:38] -rw-r--r--. 2 boinc boinc 410223734 Nov 24 00:34 ATLAS.root_0
[2025-11-25 00:31:38] -rw-r--r--. 2 boinc boinc     15847 Nov 24 00:34 start_atlas.sh
[2025-11-25 00:31:38] -rw-r--r--. 2 boinc boinc    590098 Nov 24 00:34 input.tar.gz
[2025-11-25 00:31:38] -rw-------. 1 boinc boinc 915694553 Nov 25 00:27 HITS.pool.root.1
[2025-11-25 00:31:38] -rw-------. 1 boinc boinc  13946880 Nov 25 00:31 result.tar.gz
00:31:40 (28841): run_atlas exited; CPU time 340517.828290
00:31:40 (28841): called boinc_finish(0)

</stderr_txt>
]]>

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